INFO 2025-06-26 15:30:28,066 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:30:28,066 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Kanna mission - ctdToUse = ctd1 INFO 2025-06-26 15:30:28,066 process.py process_mission():449 [1] Processing AUVCTD mission 2009.348.05 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:30:28,067 process.py download_process():165 [1] Download and processing steps for 2009.348.05 INFO 2025-06-26 15:30:28,067 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2009/2009348/2009.348.05 INFO 2025-06-26 15:30:28,067 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2009/2009348/2009.348.05 to /data/auv_data/dorado/missionlogs/2009.348.05 INFO 2025-06-26 15:30:31,397 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2009.348.05 INFO 2025-06-26 15:30:31,397 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.348.05/ctdDriver.log (3850134 bytes) INFO 2025-06-26 15:30:31,688 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.348.05/ctdDriver.log: [ 17 77 149 176 236 321 654 676 690 698 817 869 1030 1133 1455 1538 2067 2294 2966 2977 3153 3425 3429 7346 7661 9267 10168 10184 10872 11076 11470 12085 15261 15535 16622 16700 18057 18393 19253 19625 24282 29546 31121 31256 31421 31548 34001 34800 35152 35648 36432 38446 41876 41932] INFO 2025-06-26 15:30:31,700 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.348.05/ctdDriver2.log (3849685 bytes) INFO 2025-06-26 15:30:31,977 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.348.05/ctdDriver2.log: [ 7 67 139 228 313 668 690 861 1125 1447 2059 2286 2958 3145 3417 3421 3548 5596 7052 7659 10160 10176 10825 10864 11462 11964 12077 15253 15527 16614 16692 17567 18051 18387 19619 24277 26131 29541 31251 31416 33996 35643 35827 36007 36427 38441 41871 41927] INFO 2025-06-26 15:30:31,990 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.348.05/gps.log (67604 bytes) INFO 2025-06-26 15:30:32,005 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.348.05/hydroscatlog.log (3681238 bytes) INFO 2025-06-26 15:30:32,382 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.348.05/hydroscatlog.log: [ 1 185 310 523 676 1113 1368 1433 1538 2044 3235 3327 4573 7342 7427 7771 8206 9348 10247 10606 10951 11399 13857 15338 15612 17219 22685 25085 25779 27230 28858 31195 33371 34338 35905 38516 38615 41945 42275 42687 43215 43756] INFO 2025-06-26 15:30:32,393 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.348.05/navigation.log (12861182 bytes) INFO 2025-06-26 15:30:33,316 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.348.05/isuslog.log (257013 bytes) INFO 2025-06-26 15:30:33,344 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.348.05/isuslog.log: [ 1 2 3 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20] INFO 2025-06-26 15:30:33,345 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.348.05/parosci.log (4276550 bytes) INFO 2025-06-26 15:30:33,707 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.348.05/tailCone.log (2618203 bytes) INFO 2025-06-26 15:30:34,039 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.348.05/biolume.log (2986428 bytes) INFO 2025-06-26 15:30:34,325 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 15:30:34,483 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.09 seconds WARNING 2025-06-26 15:30:34,484 process.py download_process():196 [1] No lopc.bin file for 2009.348.05 INFO 2025-06-26 15:30:34,484 process.py calibrate():227 [1] Calibration steps for 2009.348.05 INFO 2025-06-26 15:30:34,613 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:30:34,615 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:30:35,178 calibrate.py _nudge_pos():1806 [1] 88: 0.190 0.0040288 -0.0013853 9274 31.16 19.189 -8.237 2009-12-14T19:33:58.872726784 INFO 2025-06-26 15:30:35,217 calibrate.py _nudge_pos():1806 [1] 92: 0.180 0.0000603 -0.0000558 135 0.45 20.055 -23.149 2009-12-14T19:34:28.870671872 INFO 2025-06-26 15:30:36,674 calibrate.py _nudge_pos():1806 [1] 247: 0.190 0.0010933 -0.0013477 10156 33.93 4.782 -7.360 2009-12-14T20:10:58.870646528 INFO 2025-06-26 15:30:38,249 calibrate.py _nudge_pos():1806 [1] 409: 0.200 0.0045508 -0.0016405 9916 33.11 20.399 -9.180 2009-12-14T20:46:46.873498112 INFO 2025-06-26 15:30:39,771 calibrate.py _nudge_pos():1806 [1] 565: 0.200 0.0013289 -0.0012280 10428 34.81 5.666 -6.537 2009-12-14T21:24:10.869773824 INFO 2025-06-26 15:30:41,351 calibrate.py _nudge_pos():1806 [1] 723: 0.010 0.0044611 -0.0009320 9640 32.18 20.577 -5.367 2009-12-14T21:58:59.066722560 INFO 2025-06-26 15:30:42,961 calibrate.py _nudge_pos():1806 [1] 884: 0.010 0.0000749 -0.0001661 549 1.83 6.077 -16.821 2009-12-14T22:03:29.068226048 INFO 2025-06-26 15:30:43,391 calibrate.py _nudge_pos():1862 [1] 892: - - - 1 0.00 - - INFO 2025-06-26 15:30:43,391 calibrate.py _nudge_pos():1868 [1] Points in final series = 54229 WARNING 2025-06-26 15:30:43,465 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:30:49,301 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:30:52,431 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 24 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:30:52,766 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 24 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:30:52,768 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2009.348.05/ctd1.nc INFO 2025-06-26 15:30:52,769 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:30:52,770 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:30:52,770 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:30:55,287 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:30:55,622 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:30:55,624 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2009.348.05/ctd2.nc INFO 2025-06-26 15:30:55,625 calibrate.py _range_qc_combined_nc():898 [1] Setting 73 ctd2_salinity values to NaN INFO 2025-06-26 15:30:55,625 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:30:55,625 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 15:30:56,022 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 15:30:56,495 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 ... 657317 657318 657319] INFO 2025-06-26 15:30:56,593 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -4 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 15:30:56,598 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 15:30:56,598 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2009.348.05 ERROR 2025-06-26 15:30:56,599 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2009.348.05 INFO 2025-06-26 15:30:56,644 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2009.348.05/dorado_2009.348.05_cal.nc INFO 2025-06-26 15:31:00,065 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:31:00,069 process.py align():251 [1] Alignment steps for 2009.348.05 INFO 2025-06-26 15:31:00,096 align.py process_cal():139 [1] Processing dorado_2009.348.05_cal.nc from /data/auv_data/dorado/missionnetcdfs/2009.348.05 INFO 2025-06-26 15:31:00,115 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:31:00,118 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 15:31:00,159 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:31:00,163 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 15:31:00,205 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:31:00,208 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 15:31:00,233 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:31:00,233 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:31:00,249 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:31:00,252 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 15:31:00,293 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:00,296 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:31:00,333 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:00,336 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:31:00,373 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:00,378 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:31:00,420 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:00,423 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:31:00,461 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:00,464 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:31:00,500 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:00,503 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:31:00,539 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:00,542 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:31:00,579 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:00,582 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:31:00,619 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:00,622 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:31:00,658 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:00,661 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:31:00,698 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:00,702 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:31:00,738 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:00,742 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:31:00,780 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:00,783 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:31:00,821 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:00,824 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:00,862 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:00,866 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:00,902 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:00,906 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:00,944 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:00,947 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:00,984 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:00,987 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:01,026 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:01,029 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:01,066 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.348.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:01,070 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:01,114 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 15:31:01,146 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 15:31:01,178 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 15:31:01,213 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 15:31:01,248 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.97 INFO 2025-06-26 15:31:01,278 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2009.348.05/dorado_2009.348.05_align.nc INFO 2025-06-26 15:31:01,341 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:31:01,343 process.py resample():273 [1] Resampling steps for 2009.348.05 INFO 2025-06-26 15:31:01,343 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:31:01,367 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.348.05/dorado_2009.348.05_align.nc mission netCDF file INFO 2025-06-26 15:31:01,372 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.348.05/dorado_2009.348.05_align.nc mission netCDF file INFO 2025-06-26 15:31:01,373 resample.py get_mission_start_end():1145 [1] navigation: 2009-12-14T19:01:57.154373376 to 2009-12-14T22:04:11.265335552 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:31:01,375 resample.py get_mission_start_end():1145 [1] hs2 : 2009-12-14T19:01:33.795973632 to 2009-12-14T22:04:11.205339648 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 15:31:01,376 resample.py get_mission_start_end():1145 [1] ctd1 : 2009-12-14T19:01:53.844600320 to 2009-12-14T22:04:11.215339008 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 15:31:01,378 resample.py get_mission_start_end():1145 [1] ctd2 : 2009-12-14T19:01:55.734470656 to 2009-12-14T22:04:11.235337472 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 15:31:01,379 resample.py get_mission_start_end():1145 [1] isus : 2009-12-14T19:02:32.821929984 to 2009-12-14T22:04:11.175341568 (0 days 00:00:00.089993984 before mission_end) INFO 2025-06-26 15:31:01,380 resample.py get_mission_start_end():1145 [1] biolume : 2009-12-14T19:01:24.556572160 to 2009-12-14T22:04:10.675341568 (0 days 00:00:00.589993984 before mission_end) INFO 2025-06-26 15:31:01,381 resample.py get_mission_start_end():1145 [1] tailcone : 2009-12-14T19:01:27.236422912 to 2009-12-14T22:04:11.235337472 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 15:31:01,382 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.348.05/dorado_2009.348.05_align.nc mission netCDF file INFO 2025-06-26 15:31:01,383 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,513 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,538 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,561 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,585 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,607 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,628 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,649 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,669 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,689 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,708 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,727 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,746 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,765 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,784 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,805 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,824 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,846 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,868 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,890 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,912 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,934 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,955 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,969 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,981 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:01,992 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:02,004 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:02,028 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:02,190 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2009.348.05/dorado_2009.348.05_1S.nc INFO 2025-06-26 15:31:03,261 create_products.py gulper_odv():401 [1] No gulper times found for 2009.348.05 INFO 2025-06-26 15:31:03,261 process.py archive():337 [1] Archiving steps for 2009.348.05 INFO 2025-06-26 15:31:03,261 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2009.348.05/dorado_2009.348.05, BASE_PATH = /data/auv_data INFO 2025-06-26 15:31:03,263 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2009.348.05/dorado_2009.348.05 files to /Volumes/AUVCTD/surveys/2009/netcdf INFO 2025-06-26 15:31:03,264 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.348.05_1S.nc INFO 2025-06-26 15:31:03,279 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.348.05/dorado_2009.348.05_1S.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:31:03,280 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.348.05_cal.nc INFO 2025-06-26 15:31:03,328 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.348.05/dorado_2009.348.05_cal.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:31:03,329 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.348.05_align.nc INFO 2025-06-26 15:31:03,375 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.348.05/dorado_2009.348.05_align.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:31:03,393 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.348.05/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009348/2009.348.05 done. INFO 2025-06-26 15:31:03,409 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.348.05/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009348/2009.348.05 done. INFO 2025-06-26 15:31:03,414 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.348.05/gps.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009348/2009.348.05 done. INFO 2025-06-26 15:31:03,428 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.348.05/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009348/2009.348.05 done. INFO 2025-06-26 15:31:03,465 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.348.05/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009348/2009.348.05 done. INFO 2025-06-26 15:31:03,471 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.348.05/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009348/2009.348.05 done. INFO 2025-06-26 15:31:03,487 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.348.05/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009348/2009.348.05 done. INFO 2025-06-26 15:31:03,500 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.348.05/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009348/2009.348.05 done. INFO 2025-06-26 15:31:03,530 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.348.05/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009348/2009.348.05 done. INFO 2025-06-26 15:31:03,531 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:31:03,531 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.348.05/dorado_2009.348.05_processing.log /Volumes/AUVCTD/surveys/2009/netcdf