INFO 2025-06-26 15:29:39,112 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:29:39,112 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Kanna mission - ctdToUse = ctd1 INFO 2025-06-26 15:29:39,112 process.py process_mission():449 [1] Processing AUVCTD mission 2009.342.04 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:29:39,112 process.py download_process():165 [1] Download and processing steps for 2009.342.04 INFO 2025-06-26 15:29:39,113 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2009/2009342/2009.342.04 INFO 2025-06-26 15:29:39,113 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2009/2009342/2009.342.04 to /data/auv_data/dorado/missionlogs/2009.342.04 INFO 2025-06-26 15:29:42,203 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2009.342.04 INFO 2025-06-26 15:29:42,203 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.342.04/ctdDriver.log (3299606 bytes) INFO 2025-06-26 15:29:42,433 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.342.04/ctdDriver.log: [ 22 141 148 449 520 546 664 708 1039 1969 2058 2268 2988 3568 3626 5552 5598 5743 6223 6778 7676 8209 8673 9446 9965 11853 15290 17577 19876 24206 24936 27274 33739 34673 34941 36157] INFO 2025-06-26 15:29:42,443 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.342.04/ctdDriver2.log (3298893 bytes) INFO 2025-06-26 15:29:42,683 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.342.04/ctdDriver2.log: [ 142 396 441 512 538 700 1031 1455 1961 2050 2260 2980 3560 3618 5544 5590 5735 6215 6770 7668 8201 8665 8998 9438 11845 11965 15282 17569 24198 27266 33731 34665 34933 36149] INFO 2025-06-26 15:29:42,695 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.342.04/gps.log (122036 bytes) INFO 2025-06-26 15:29:42,716 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.342.04/hydroscatlog.log (3154978 bytes) INFO 2025-06-26 15:29:43,043 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.342.04/hydroscatlog.log: [ 1 545 701 860 1090 1573 2214 2349 3428 3641 4574 4582 5313 6294 6469 7322 7654 7958 8278 8401 8665 9075 13566 14514 15494 16972 17722 18009 18680 22392 22888 23005 24268 24998 25529 26770 27479 30753 31094 34468] INFO 2025-06-26 15:29:43,054 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.342.04/navigation.log (11014482 bytes) INFO 2025-06-26 15:29:43,895 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.342.04/isuslog.log (220149 bytes) INFO 2025-06-26 15:29:43,920 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.342.04/isuslog.log: [ 1 2 3 4 6 7 8 9 10 11 12 13 14 15 16 17 18] INFO 2025-06-26 15:29:43,921 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.342.04/parosci.log (3661862 bytes) INFO 2025-06-26 15:29:44,230 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.342.04/tailCone.log (2243179 bytes) INFO 2025-06-26 15:29:44,515 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.31 seconds WARNING 2025-06-26 15:29:44,516 process.py download_process():196 [1] No lopc.bin file for 2009.342.04 INFO 2025-06-26 15:29:44,516 process.py calibrate():227 [1] Calibration steps for 2009.342.04 INFO 2025-06-26 15:29:44,618 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:29:44,620 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:29:45,354 calibrate.py _nudge_pos():1806 [1] 107: 0.080 0.0037569 -0.0003164 10001 33.60 16.596 -1.745 2009-12-08T19:30:29.086942464 INFO 2025-06-26 15:29:45,392 calibrate.py _nudge_pos():1806 [1] 111: 0.080 0.0000618 0.0000073 145 0.48 19.096 2.822 2009-12-08T19:31:01.084750336 INFO 2025-06-26 15:29:46,833 calibrate.py _nudge_pos():1806 [1] 265: 0.070 0.0024901 -0.0003456 9995 33.41 11.062 -1.917 2009-12-08T20:06:59.086917120 INFO 2025-06-26 15:29:48,292 calibrate.py _nudge_pos():1806 [1] 421: 0.080 0.0001855 -0.0006779 10420 34.81 0.791 -3.608 2009-12-08T20:44:23.083192832 INFO 2025-06-26 15:29:49,793 calibrate.py _nudge_pos():1806 [1] 581: 0.080 0.0022715 -0.0002998 7921 26.45 12.748 -2.101 2009-12-08T21:13:29.083583488 INFO 2025-06-26 15:30:00,202 calibrate.py _nudge_pos():1862 [1] 1647: - - - 5 0.01 - - INFO 2025-06-26 15:30:00,202 calibrate.py _nudge_pos():1868 [1] Points in final series = 46661 WARNING 2025-06-26 15:30:00,265 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:30:05,292 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 6 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:30:07,963 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 24 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:30:08,250 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 24 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:30:08,252 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2009.342.04/ctd1.nc INFO 2025-06-26 15:30:08,253 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:30:08,253 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:30:08,253 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:30:10,332 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:30:10,623 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:30:10,625 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2009.342.04/ctd2.nc INFO 2025-06-26 15:30:10,626 calibrate.py _range_qc_combined_nc():898 [1] Setting 75 ctd2_salinity values to NaN INFO 2025-06-26 15:30:10,626 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:30:10,626 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 15:30:10,963 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2009.342.04 ERROR 2025-06-26 15:30:10,963 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2009.342.04 ERROR 2025-06-26 15:30:10,963 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2009.342.04 INFO 2025-06-26 15:30:11,002 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2009.342.04/dorado_2009.342.04_cal.nc INFO 2025-06-26 15:30:13,959 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:30:13,963 process.py align():251 [1] Alignment steps for 2009.342.04 INFO 2025-06-26 15:30:13,988 align.py process_cal():139 [1] Processing dorado_2009.342.04_cal.nc from /data/auv_data/dorado/missionnetcdfs/2009.342.04 INFO 2025-06-26 15:30:14,005 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:30:14,008 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 15:30:14,046 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:30:14,049 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 15:30:14,088 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:30:14,092 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 15:30:14,113 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:30:14,113 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:30:14,127 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:30:14,130 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 15:30:14,167 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,170 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:30:14,203 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,206 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:30:14,240 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,243 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:30:14,275 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,278 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:30:14,311 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,314 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:30:14,346 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,350 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:30:14,382 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,385 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:30:14,417 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,420 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:30:14,454 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,458 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:30:14,490 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,493 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:30:14,526 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,529 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:30:14,562 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,565 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:30:14,597 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,600 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:30:14,633 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,636 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:30:14,670 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,673 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:30:14,706 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,709 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:30:14,743 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,746 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:30:14,778 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,781 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:30:14,816 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,819 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:30:14,852 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.342.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:30:14,855 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:30:14,894 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 15:30:14,924 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 15:30:14,953 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 15:30:14,985 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.97 INFO 2025-06-26 15:30:15,014 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2009.342.04/dorado_2009.342.04_align.nc INFO 2025-06-26 15:30:15,068 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:30:15,070 process.py resample():273 [1] Resampling steps for 2009.342.04 INFO 2025-06-26 15:30:15,070 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:30:15,091 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.342.04/dorado_2009.342.04_align.nc mission netCDF file INFO 2025-06-26 15:30:15,096 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.342.04/dorado_2009.342.04_align.nc mission netCDF file INFO 2025-06-26 15:30:15,097 resample.py get_mission_start_end():1145 [1] navigation: 2009-12-08T18:55:44.279761664 to 2009-12-08T21:31:51.088091136 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:30:15,098 resample.py get_mission_start_end():1145 [1] hs2 : 2009-12-08T18:55:20.791370496 to 2009-12-08T21:31:50.898104064 (0 days 00:00:00.189987072 before mission_end) INFO 2025-06-26 15:30:15,100 resample.py get_mission_start_end():1145 [1] ctd1 : 2009-12-08T18:55:38.710142976 to 2009-12-08T21:31:50.998097152 (0 days 00:00:00.089993984 before mission_end) INFO 2025-06-26 15:30:15,101 resample.py get_mission_start_end():1145 [1] ctd2 : 2009-12-08T18:55:40.230038784 to 2009-12-08T21:31:50.998097152 (0 days 00:00:00.089993984 before mission_end) INFO 2025-06-26 15:30:15,102 resample.py get_mission_start_end():1145 [1] isus : 2009-12-08T18:56:08.948071424 to 2009-12-08T21:31:50.668119808 (0 days 00:00:00.419971328 before mission_end) INFO 2025-06-26 15:30:15,104 resample.py get_mission_start_end():1145 [1] tailcone : 2009-12-08T18:55:08.762194688 to 2009-12-08T21:31:51.008096768 (0 days 00:00:00.079994368 before mission_end) INFO 2025-06-26 15:30:15,104 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.342.04/dorado_2009.342.04_align.nc mission netCDF file INFO 2025-06-26 15:30:15,105 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,222 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,243 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,265 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,286 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,306 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,326 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,345 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,364 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,382 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,399 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,416 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,433 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,451 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,468 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,486 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,504 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,523 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,543 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,564 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,583 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,603 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,621 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,634 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,645 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,655 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,676 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:30:15,822 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2009.342.04/dorado_2009.342.04_1S.nc INFO 2025-06-26 15:30:19,627 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 15:30:27,817 create_products.py gulper_odv():522 [1] Wrote 6 Gulper data lines to /data/auv_data/dorado/missionodvs/2009.342.04/dorado_2009.342.04_1S_Gulper.txt INFO 2025-06-26 15:30:27,818 process.py archive():337 [1] Archiving steps for 2009.342.04 INFO 2025-06-26 15:30:27,818 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2009.342.04/dorado_2009.342.04, BASE_PATH = /data/auv_data INFO 2025-06-26 15:30:27,818 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2009.342.04/dorado_2009.342.04 files to /Volumes/AUVCTD/surveys/2009/netcdf INFO 2025-06-26 15:30:27,820 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.342.04_1S.nc INFO 2025-06-26 15:30:27,833 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.342.04/dorado_2009.342.04_1S.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:30:27,834 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.342.04_cal.nc INFO 2025-06-26 15:30:27,875 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.342.04/dorado_2009.342.04_cal.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:30:27,876 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.342.04_align.nc INFO 2025-06-26 15:30:27,917 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.342.04/dorado_2009.342.04_align.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:30:27,934 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.342.04/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009342/2009.342.04 done. INFO 2025-06-26 15:30:27,949 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.342.04/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009342/2009.342.04 done. INFO 2025-06-26 15:30:27,955 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.342.04/gps.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009342/2009.342.04 done. INFO 2025-06-26 15:30:27,968 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.342.04/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009342/2009.342.04 done. INFO 2025-06-26 15:30:28,002 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.342.04/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009342/2009.342.04 done. INFO 2025-06-26 15:30:28,008 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.342.04/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009342/2009.342.04 done. INFO 2025-06-26 15:30:28,025 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.342.04/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009342/2009.342.04 done. INFO 2025-06-26 15:30:28,038 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.342.04/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009342/2009.342.04 done. INFO 2025-06-26 15:30:28,038 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:30:28,040 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2009/odv/dorado_2009.342.04_1S_Gulper.txt INFO 2025-06-26 15:30:28,045 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2009.342.04/dorado_2009.342.04_1S_Gulper.txt /Volumes/AUVCTD/surveys/2009/odv done. INFO 2025-06-26 15:30:28,045 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.342.04/dorado_2009.342.04_processing.log /Volumes/AUVCTD/surveys/2009/netcdf