INFO 2025-06-26 15:27:51,700 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:27:51,700 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Kanna mission - Even though the thursdays runs (3 of them) are very short (~30mn each) the first one at leas had the gulper fired so it is of relevance for further science analysis. - ctdToUse = ctd1 INFO 2025-06-26 15:27:51,700 process.py process_mission():449 [1] Processing AUVCTD mission 2009.309.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:27:51,700 process.py download_process():165 [1] Download and processing steps for 2009.309.02 INFO 2025-06-26 15:27:51,700 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2009/2009309/2009.309.02 INFO 2025-06-26 15:27:51,700 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2009/2009309/2009.309.02 to /data/auv_data/dorado/missionlogs/2009.309.02 INFO 2025-06-26 15:27:52,812 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2009.309.02 INFO 2025-06-26 15:27:52,813 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.02/ctdDriver.log (527606 bytes) INFO 2025-06-26 15:27:52,859 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.02/ctdDriver2.log (527949 bytes) INFO 2025-06-26 15:27:52,902 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.02/gps.log (33188 bytes) INFO 2025-06-26 15:27:52,912 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.02/hydroscatlog.log (511330 bytes) INFO 2025-06-26 15:27:52,978 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.02/navigation.log (1764698 bytes) INFO 2025-06-26 15:27:53,122 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.02/isuslog.log (34293 bytes) INFO 2025-06-26 15:27:53,129 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.02/parosci.log (625238 bytes) INFO 2025-06-26 15:27:53,185 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.02/tailCone.log (78955 bytes) INFO 2025-06-26 15:27:53,202 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.02/biolume.log (418204 bytes) INFO 2025-06-26 15:27:53,245 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 15:27:53,269 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.46 seconds INFO 2025-06-26 15:27:53,269 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.02/lopc.bin (1293745 bytes) INFO 2025-06-26 15:27:53,269 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:27:53 2025 INFO 2025-06-26 15:27:53,269 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2009.309.02/parosci.nc INFO 2025-06-26 15:27:53,269 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:27:53,269 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2009.309.02/parosci.nc INFO 2025-06-26 15:27:53,271 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1257446094.7, sensor_off_time = 1257447620.3 INFO 2025-06-26 15:27:53,271 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 1525 seconds. Expecting to read 3050 L frames from the lopc.bin file. INFO 2025-06-26 15:27:53,271 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 3050 records from the lopc.bin file. INFO 2025-06-26 15:27:53,290 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2009-11-05 18:34:54 Z and endTime = 2009-11-05 19:00:20 Z with 3050 records expected to be read from lopc.bin INFO 2025-06-26 15:27:53,290 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2009.309.02/lopc.bin INFO 2025-06-26 15:27:53,290 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2009.309.02/lopc.nc INFO 2025-06-26 15:27:53,290 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2009.309.02/lopc.nc INFO 2025-06-26 15:27:53,290 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2009.309.02 INFO 2025-06-26 15:27:53,291 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 15:27:53,320 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 15:27:53,320 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 15:27:53,320 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-26 15:27:54,900 lopcToNetCDF.py main():2345 [1] >>> Done reading file. INFO 2025-06-26 15:27:54,900 lopcToNetCDF.py main():2346 [1] lFrameCount = 3029, mFrameCount = 3401 INFO 2025-06-26 15:27:54,900 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2009.309.02/parosci.nc INFO 2025-06-26 15:27:54,901 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:27:54,901 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2009.309.02/parosci.nc INFO 2025-06-26 15:27:54,902 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1257446094.7, sensor_off_time = 1257447620.3 INFO 2025-06-26 15:27:54,903 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 1525 seconds. Expecting to read 3050 L frames from the lopc.bin file. INFO 2025-06-26 15:27:54,903 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 3050 records from the lopc.bin file. INFO 2025-06-26 15:27:54,903 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 15408 and len(sampleCountList) = 3058 INFO 2025-06-26 15:27:54,903 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 15:27:54,903 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [15408 15409 15410 ... 20744 20745 20746] INFO 2025-06-26 15:27:54,903 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 15:27:54,904 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 15:27:54,904 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 ... 1 1 1] INFO 2025-06-26 15:27:54,904 lopcToNetCDF.py deSpike():1590 [1] Found 1 spike indicators at indices: [6] INFO 2025-06-26 15:27:54,904 lopcToNetCDF.py deSpike():1595 [1] Identifying nature of spike value = 17695 at index = 6 INFO 2025-06-26 15:27:54,904 lopcToNetCDF.py deSpike():1714 [1] This is the last element in spike_indx. No need to deSpike(). INFO 2025-06-26 15:27:54,904 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [15408 15409 15410 ... 20744 20745 20746] INFO 2025-06-26 15:27:54,904 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [15408 15409 15410 ... 20744 20745 20746] with len(correctedSampleCountList) = 3058 INFO 2025-06-26 15:27:54,904 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 15408 from all values of correctedSampleCountList INFO 2025-06-26 15:27:54,904 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 15:27:54,904 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.0000e+00 5.0000e-01 1.0000e+00 ... 2.6680e+03 2.6685e+03 2.6690e+03] INFO 2025-06-26 15:27:54,905 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.25744609e+09 1.25744610e+09 1.25744610e+09 ... 1.25744876e+09 1.25744876e+09 1.25744876e+09] INFO 2025-06-26 15:27:54,905 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1257446094.7 1257446095.2, ..., timestampArray[-2:] = 1257448763.2 1257448763.7] INFO 2025-06-26 15:27:54,909 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1257446094.744686), np.float64(1257446095.244686)], ..., timestampList[-2:] = [np.float64(1257448763.244686), np.float64(1257448763.744686)]] INFO 2025-06-26 15:27:54,909 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 3058) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 15:27:54,909 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [3002, 3023] INFO 2025-06-26 15:27:54,909 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 144 INFO 2025-06-26 15:27:54,909 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 3058 INFO 2025-06-26 15:27:54,909 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1257446094.744686), np.float64(1257446095.244686)], ..., timestampList[-2:] = [np.float64(1257448763.244686), np.float64(1257448763.744686)]] INFO 2025-06-26 15:27:54,909 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 3058) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 15:27:54,909 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(3001), np.int32(3022)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 15:27:54,909 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 144 INFO 2025-06-26 15:27:54,909 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 ERROR 2025-06-26 15:27:54,910 lopcToNetCDF.py constructTimestampList():1501 [1] Cannot interpolate to cFrameEsecsListInterpolated: array of sample points is empty INFO 2025-06-26 15:27:54,913 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 144 INFO 2025-06-26 15:27:54,913 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1257447244.744686)], ..., tsList[-2:] = [np.float64(1257448735.744686), np.float64(1257448746.244686)] INFO 2025-06-26 15:27:54,913 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2009-11-05 18:54:04 Z INFO 2025-06-26 15:27:54,913 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2009-11-05 19:19:06 Z INFO 2025-06-26 15:27:54,913 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 3029 INFO 2025-06-26 15:27:54,913 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [-9999], ..., cFrameEsecsList[-2:] = [-9999, -9999] INFO 2025-06-26 15:27:54,913 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 1969-12-31 21:13:21 Z INFO 2025-06-26 15:27:54,913 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 1969-12-31 21:13:21 Z INFO 2025-06-26 15:27:54,917 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2009.309.02/lopc.nc INFO 2025-06-26 15:27:54,917 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 15:27:54 2025 Elapsed processing time from start of processing = 1 seconds INFO 2025-06-26 15:27:54,917 process.py calibrate():227 [1] Calibration steps for 2009.309.02 INFO 2025-06-26 15:27:54,989 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:27:54,990 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:27:55,685 calibrate.py _nudge_pos():1806 [1] 103: 0.140 0.0012874 0.0000830 5400 18.00 10.616 0.854 2009-11-05T18:54:34.463869696 INFO 2025-06-26 15:27:58,844 calibrate.py _nudge_pos():1862 [1] 415: - - - 4 0.01 - - INFO 2025-06-26 15:27:58,845 calibrate.py _nudge_pos():1868 [1] Points in final series = 7469 WARNING 2025-06-26 15:27:58,858 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:27:58,931 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:27:59,007 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:27:59,054 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:27:59,055 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2009.309.02/ctd1.nc INFO 2025-06-26 15:27:59,056 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:27:59,057 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:27:59,057 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:27:59,122 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:27:59,169 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:27:59,171 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2009.309.02/ctd2.nc INFO 2025-06-26 15:27:59,172 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 15:27:59,172 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:27:59,172 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 15:27:59,181 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 15:27:59,246 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 63 64 65 66 67 68 9840 35580 62040] INFO 2025-06-26 15:27:59,261 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 15:27:59,266 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 15:27:59,275 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2009.309.02 INFO 2025-06-26 15:27:59,280 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2009.309.02/dorado_2009.309.02_cal.nc INFO 2025-06-26 15:27:59,327 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:27:59,331 process.py align():251 [1] Alignment steps for 2009.309.02 INFO 2025-06-26 15:27:59,355 align.py process_cal():139 [1] Processing dorado_2009.309.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2009.309.02 INFO 2025-06-26 15:27:59,361 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:27:59,363 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:27:59,376 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:27:59,378 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:27:59,390 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:27:59,392 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:27:59,399 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:27:59,399 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:27:59,404 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:27:59,406 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:27:59,418 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,419 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,431 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,433 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,445 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,447 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,459 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,460 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,472 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,474 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,486 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,488 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,500 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,502 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,514 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,516 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,527 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,529 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,541 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,543 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,555 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,557 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,569 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,571 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,583 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,585 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,597 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,599 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,612 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,614 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,626 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,628 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,641 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,643 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,655 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,657 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,670 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,672 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,684 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.309.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:59,686 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:59,702 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 15:27:59,716 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 15:27:59,730 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 15:27:59,746 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 15:27:59,761 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:27:59,775 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:27:59,790 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:27:59,805 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:27:59,820 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:27:59,835 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.07 INFO 2025-06-26 15:27:59,845 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2009.309.02/dorado_2009.309.02_align.nc INFO 2025-06-26 15:27:59,895 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:27:59,897 process.py resample():273 [1] Resampling steps for 2009.309.02 INFO 2025-06-26 15:27:59,898 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:27:59,920 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.309.02/dorado_2009.309.02_align.nc mission netCDF file INFO 2025-06-26 15:27:59,926 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.309.02/dorado_2009.309.02_align.nc mission netCDF file INFO 2025-06-26 15:27:59,927 resample.py get_mission_start_end():1145 [1] navigation: 2009-11-05T18:35:26.722495232 to 2009-11-05T19:00:20.270180352 (0 days 00:18:45.974505472 before mission_end) WARNING 2025-06-26 15:27:59,928 resample.py get_mission_start_end():1156 [1] Instrument navigation has a gap > 5 minutes at the end of the mission: 0 days 00:18:45.974505472 INFO 2025-06-26 15:27:59,929 resample.py get_mission_start_end():1145 [1] hs2 : 2009-11-05T18:35:00.644281600 to 2009-11-05T19:00:20.180186624 (0 days 00:18:46.064499200 before mission_end) WARNING 2025-06-26 15:27:59,929 resample.py get_mission_start_end():1156 [1] Instrument hs2 has a gap > 5 minutes at the end of the mission: 0 days 00:18:46.064499200 INFO 2025-06-26 15:27:59,930 resample.py get_mission_start_end():1145 [1] ctd1 : 2009-11-05T18:35:22.612776704 to 2009-11-05T19:00:20.320176896 (0 days 00:18:45.924508928 before mission_end) WARNING 2025-06-26 15:27:59,931 resample.py get_mission_start_end():1156 [1] Instrument ctd1 has a gap > 5 minutes at the end of the mission: 0 days 00:18:45.924508928 INFO 2025-06-26 15:27:59,932 resample.py get_mission_start_end():1145 [1] ctd2 : 2009-11-05T18:35:22.452787712 to 2009-11-05T19:00:20.160187648 (0 days 00:18:46.084498176 before mission_end) WARNING 2025-06-26 15:27:59,933 resample.py get_mission_start_end():1156 [1] Instrument ctd2 has a gap > 5 minutes at the end of the mission: 0 days 00:18:46.084498176 INFO 2025-06-26 15:27:59,934 resample.py get_mission_start_end():1145 [1] isus : 2009-11-05T18:36:13.099318272 to 2009-11-05T19:00:20.330176000 (0 days 00:18:45.914509824 before mission_end) WARNING 2025-06-26 15:27:59,935 resample.py get_mission_start_end():1156 [1] Instrument isus has a gap > 5 minutes at the end of the mission: 0 days 00:18:45.914509824 INFO 2025-06-26 15:27:59,935 resample.py get_mission_start_end():1145 [1] biolume : 2009-11-05T18:34:53.844713216 to 2009-11-05T19:00:19.540195840 (0 days 00:18:46.704489984 before mission_end) WARNING 2025-06-26 15:27:59,936 resample.py get_mission_start_end():1156 [1] Instrument biolume has a gap > 5 minutes at the end of the mission: 0 days 00:18:46.704489984 INFO 2025-06-26 15:27:59,937 resample.py get_mission_start_end():1145 [1] lopc : 2009-11-05T18:54:04.744685824 to 2009-11-05T19:19:06.244685824 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:27:59,938 resample.py get_mission_start_end():1145 [1] tailcone : 2009-11-05T18:34:59.194381056 to 2009-11-05T19:00:19.700219392 (0 days 00:18:46.544466432 before mission_end) WARNING 2025-06-26 15:27:59,939 resample.py get_mission_start_end():1156 [1] Instrument tailcone has a gap > 5 minutes at the end of the mission: 0 days 00:18:46.544466432 INFO 2025-06-26 15:27:59,939 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.309.02/dorado_2009.309.02_align.nc mission netCDF file INFO 2025-06-26 15:27:59,940 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:59,982 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:59,982 resample.py resample_variable():1038 [1] Padding navigation_roll with 0 days 00:18:45.974505472 of NaNs to the end of mission INFO 2025-06-26 15:27:59,993 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:59,993 resample.py resample_variable():1038 [1] Padding navigation_pitch with 0 days 00:18:45.974505472 of NaNs to the end of mission INFO 2025-06-26 15:28:00,006 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,006 resample.py resample_variable():1038 [1] Padding navigation_yaw with 0 days 00:18:45.974505472 of NaNs to the end of mission INFO 2025-06-26 15:28:00,019 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,019 resample.py resample_variable():1038 [1] Padding navigation_mWaterSpeed with 0 days 00:18:45.974505472 of NaNs to the end of mission INFO 2025-06-26 15:28:00,032 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,032 resample.py resample_variable():1038 [1] Padding hs2_bbp420 with 0 days 00:18:46.064499200 of NaNs to the end of mission INFO 2025-06-26 15:28:00,043 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,043 resample.py resample_variable():1038 [1] Padding hs2_bbp700 with 0 days 00:18:46.064499200 of NaNs to the end of mission INFO 2025-06-26 15:28:00,053 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,053 resample.py resample_variable():1038 [1] Padding hs2_fl700 with 0 days 00:18:46.064499200 of NaNs to the end of mission INFO 2025-06-26 15:28:00,065 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,065 resample.py resample_variable():1038 [1] Padding ctd1_temperature with 0 days 00:18:45.924508928 of NaNs to the end of mission INFO 2025-06-26 15:28:00,075 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,075 resample.py resample_variable():1038 [1] Padding ctd1_conductivity with 0 days 00:18:45.924508928 of NaNs to the end of mission INFO 2025-06-26 15:28:00,084 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,084 resample.py resample_variable():1038 [1] Padding ctd1_salinity with 0 days 00:18:45.924508928 of NaNs to the end of mission INFO 2025-06-26 15:28:00,097 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,097 resample.py resample_variable():1038 [1] Padding ctd1_temperature_onboard with 0 days 00:18:45.924508928 of NaNs to the end of mission INFO 2025-06-26 15:28:00,108 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,108 resample.py resample_variable():1038 [1] Padding ctd1_conductivity_onboard with 0 days 00:18:45.924508928 of NaNs to the end of mission INFO 2025-06-26 15:28:00,117 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,117 resample.py resample_variable():1038 [1] Padding ctd1_dissolvedO2 with 0 days 00:18:45.924508928 of NaNs to the end of mission INFO 2025-06-26 15:28:00,127 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,127 resample.py resample_variable():1038 [1] Padding ctd1_oxygen_mll with 0 days 00:18:45.924508928 of NaNs to the end of mission INFO 2025-06-26 15:28:00,136 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,136 resample.py resample_variable():1038 [1] Padding ctd1_oxygen_umolkg with 0 days 00:18:45.924508928 of NaNs to the end of mission INFO 2025-06-26 15:28:00,145 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,146 resample.py resample_variable():1038 [1] Padding ctd1_flow1 with 0 days 00:18:45.924508928 of NaNs to the end of mission INFO 2025-06-26 15:28:00,156 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,156 resample.py resample_variable():1038 [1] Padding ctd2_temperature with 0 days 00:18:46.084498176 of NaNs to the end of mission INFO 2025-06-26 15:28:00,166 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,167 resample.py resample_variable():1038 [1] Padding ctd2_conductivity with 0 days 00:18:46.084498176 of NaNs to the end of mission INFO 2025-06-26 15:28:00,177 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,177 resample.py resample_variable():1038 [1] Padding ctd2_salinity with 0 days 00:18:46.084498176 of NaNs to the end of mission INFO 2025-06-26 15:28:00,187 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,187 resample.py resample_variable():1038 [1] Padding ctd2_temperature_onboard with 0 days 00:18:46.084498176 of NaNs to the end of mission INFO 2025-06-26 15:28:00,197 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,197 resample.py resample_variable():1038 [1] Padding ctd2_conductivity_onboard with 0 days 00:18:46.084498176 of NaNs to the end of mission INFO 2025-06-26 15:28:00,208 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,208 resample.py resample_variable():1038 [1] Padding ctd2_flow2 with 0 days 00:18:46.084498176 of NaNs to the end of mission INFO 2025-06-26 15:28:00,217 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,218 resample.py resample_variable():1038 [1] Padding isus_nitrate with 0 days 00:18:45.914509824 of NaNs to the end of mission INFO 2025-06-26 15:28:00,226 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,226 resample.py resample_variable():1038 [1] Padding isus_temp with 0 days 00:18:45.914509824 of NaNs to the end of mission INFO 2025-06-26 15:28:00,235 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,235 resample.py resample_variable():1038 [1] Padding isus_quality with 0 days 00:18:45.914509824 of NaNs to the end of mission INFO 2025-06-26 15:28:00,245 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,245 resample.py resample_variable():1038 [1] Padding biolume_flow with 0 days 00:18:46.704489984 of NaNs to the end of mission INFO 2025-06-26 15:28:00,254 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,262 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,270 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,278 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,287 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,296 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:28:00,296 resample.py resample_variable():1038 [1] Padding tailcone_propRpm with 0 days 00:18:46.544466432 of NaNs to the end of mission INFO 2025-06-26 15:28:00,411 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2009.309.02/dorado_2009.309.02_1S.nc INFO 2025-06-26 15:28:01,716 create_products.py gulper_odv():401 [1] No gulper times found for 2009.309.02 INFO 2025-06-26 15:28:01,717 process.py archive():337 [1] Archiving steps for 2009.309.02 INFO 2025-06-26 15:28:01,717 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2009.309.02/dorado_2009.309.02, BASE_PATH = /data/auv_data INFO 2025-06-26 15:28:01,717 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2009.309.02/dorado_2009.309.02 files to /Volumes/AUVCTD/surveys/2009/netcdf INFO 2025-06-26 15:28:01,718 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.309.02_1S.nc INFO 2025-06-26 15:28:01,728 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.02/dorado_2009.309.02_1S.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:28:01,729 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.309.02_cal.nc INFO 2025-06-26 15:28:01,743 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.02/dorado_2009.309.02_cal.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:28:01,744 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.309.02_align.nc INFO 2025-06-26 15:28:01,757 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.02/dorado_2009.309.02_align.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:28:01,765 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.02 done. INFO 2025-06-26 15:28:01,773 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.02 done. INFO 2025-06-26 15:28:01,777 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.02 done. INFO 2025-06-26 15:28:01,785 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.02 done. INFO 2025-06-26 15:28:01,794 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.02 done. INFO 2025-06-26 15:28:01,798 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.02 done. INFO 2025-06-26 15:28:01,805 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.02 done. INFO 2025-06-26 15:28:01,809 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.02 done. INFO 2025-06-26 15:28:01,818 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.02 done. INFO 2025-06-26 15:28:01,828 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.02/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.02 done. INFO 2025-06-26 15:28:01,828 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:28:01,829 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.02/dorado_2009.309.02_processing.log /Volumes/AUVCTD/surveys/2009/netcdf