INFO 2025-06-26 15:27:35,049 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:27:35,049 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Kanna mission - Even though the thursdays runs (3 of them) are very short (~30mn each) the first one at leas had the gulper fired so it is of relevance for further science analysis. - ctdToUse = ctd1 INFO 2025-06-26 15:27:35,049 process.py process_mission():449 [1] Processing AUVCTD mission 2009.309.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:27:35,050 process.py download_process():165 [1] Download and processing steps for 2009.309.01 INFO 2025-06-26 15:27:35,050 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2009/2009309/2009.309.01 INFO 2025-06-26 15:27:35,050 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2009/2009309/2009.309.01 to /data/auv_data/dorado/missionlogs/2009.309.01 INFO 2025-06-26 15:27:36,491 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2009.309.01 INFO 2025-06-26 15:27:36,491 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.01/ctdDriver.log (997526 bytes) INFO 2025-06-26 15:27:36,573 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.01/ctdDriver2.log (999013 bytes) INFO 2025-06-26 15:27:36,653 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.01/gps.log (56516 bytes) INFO 2025-06-26 15:27:36,669 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.01/hydroscatlog.log (961150 bytes) INFO 2025-06-26 15:27:36,794 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.01/navigation.log (3344482 bytes) INFO 2025-06-26 15:27:37,049 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.01/isuslog.log (65781 bytes) INFO 2025-06-26 15:27:37,059 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.01/parosci.log (1174022 bytes) INFO 2025-06-26 15:27:37,160 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.01/tailCone.log (147211 bytes) INFO 2025-06-26 15:27:37,184 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.01/biolume.log (782412 bytes) INFO 2025-06-26 15:27:37,263 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 15:27:37,308 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.82 seconds INFO 2025-06-26 15:27:37,308 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2009.309.01/lopc.bin (1780752 bytes) INFO 2025-06-26 15:27:37,308 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:27:37 2025 INFO 2025-06-26 15:27:37,308 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2009.309.01/parosci.nc INFO 2025-06-26 15:27:37,308 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:27:37,308 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2009.309.01/parosci.nc INFO 2025-06-26 15:27:37,310 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1257442086.5, sensor_off_time = 1257444950.7 INFO 2025-06-26 15:27:37,310 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 2864 seconds. Expecting to read 5728 L frames from the lopc.bin file. INFO 2025-06-26 15:27:37,311 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 5728 records from the lopc.bin file. INFO 2025-06-26 15:27:37,346 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2009-11-05 17:28:06 Z and endTime = 2009-11-05 18:15:50 Z with 5728 records expected to be read from lopc.bin INFO 2025-06-26 15:27:37,346 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2009.309.01/lopc.bin INFO 2025-06-26 15:27:37,346 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2009.309.01/lopc.nc INFO 2025-06-26 15:27:37,346 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2009.309.01/lopc.nc INFO 2025-06-26 15:27:37,346 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2009.309.01 INFO 2025-06-26 15:27:37,347 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 15:27:37,383 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 15:27:37,383 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 15:27:37,383 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-26 15:27:39,249 lopcToNetCDF.py main():2345 [1] >>> Done reading file. INFO 2025-06-26 15:27:39,249 lopcToNetCDF.py main():2346 [1] lFrameCount = 5697, mFrameCount = 3551 INFO 2025-06-26 15:27:39,249 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2009.309.01/parosci.nc INFO 2025-06-26 15:27:39,249 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:27:39,249 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2009.309.01/parosci.nc INFO 2025-06-26 15:27:39,252 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1257442086.5, sensor_off_time = 1257444950.7 INFO 2025-06-26 15:27:39,252 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 2864 seconds. Expecting to read 5728 L frames from the lopc.bin file. INFO 2025-06-26 15:27:39,252 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 5728 records from the lopc.bin file. INFO 2025-06-26 15:27:39,252 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 5580 and len(sampleCountList) = 5736 INFO 2025-06-26 15:27:39,252 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 15:27:39,253 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [ 5580 5581 5582 ... 15405 15406 15407] INFO 2025-06-26 15:27:39,253 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 15:27:39,253 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 15:27:39,253 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 ... 1 1 1] INFO 2025-06-26 15:27:39,253 lopcToNetCDF.py deSpike():1590 [1] Found 1 spike indicators at indices: [7] INFO 2025-06-26 15:27:39,253 lopcToNetCDF.py deSpike():1595 [1] Identifying nature of spike value = 9679 at index = 7 INFO 2025-06-26 15:27:39,253 lopcToNetCDF.py deSpike():1714 [1] This is the last element in spike_indx. No need to deSpike(). INFO 2025-06-26 15:27:39,253 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [ 5580 5581 5582 ... 15405 15406 15407] INFO 2025-06-26 15:27:39,254 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [ 5580 5581 5582 ... 15405 15406 15407] with len(correctedSampleCountList) = 5736 INFO 2025-06-26 15:27:39,254 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 5580 from all values of correctedSampleCountList INFO 2025-06-26 15:27:39,254 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 15:27:39,254 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.0000e+00 5.0000e-01 1.0000e+00 ... 4.9125e+03 4.9130e+03 4.9135e+03] INFO 2025-06-26 15:27:39,254 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.25744209e+09 1.25744209e+09 1.25744209e+09 ... 1.25744700e+09 1.25744700e+09 1.25744700e+09] INFO 2025-06-26 15:27:39,254 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1257442086.5 1257442087.0, ..., timestampArray[-2:] = 1257446999.5 1257447000.0] INFO 2025-06-26 15:27:39,261 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1257442086.479271), np.float64(1257442086.979271)], ..., timestampList[-2:] = [np.float64(1257446999.479271), np.float64(1257446999.979271)]] INFO 2025-06-26 15:27:39,261 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 5736) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 15:27:39,261 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [5669, 5690] INFO 2025-06-26 15:27:39,261 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 271 INFO 2025-06-26 15:27:39,261 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 5736 INFO 2025-06-26 15:27:39,261 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1257442086.479271), np.float64(1257442086.979271)], ..., timestampList[-2:] = [np.float64(1257446999.479271), np.float64(1257446999.979271)]] INFO 2025-06-26 15:27:39,261 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 5736) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 15:27:39,261 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(5668), np.int32(5689)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 15:27:39,262 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 271 INFO 2025-06-26 15:27:39,262 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 ERROR 2025-06-26 15:27:39,262 lopcToNetCDF.py constructTimestampList():1501 [1] Cannot interpolate to cFrameEsecsListInterpolated: array of sample points is empty INFO 2025-06-26 15:27:39,267 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 271 INFO 2025-06-26 15:27:39,267 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1257444141.979271)], ..., tsList[-2:] = [np.float64(1257446966.479271), np.float64(1257446976.979271)] INFO 2025-06-26 15:27:39,267 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2009-11-05 18:02:21 Z INFO 2025-06-26 15:27:39,267 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2009-11-05 18:49:36 Z INFO 2025-06-26 15:27:39,268 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 5697 INFO 2025-06-26 15:27:39,268 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [-9999], ..., cFrameEsecsList[-2:] = [-9999, -9999] INFO 2025-06-26 15:27:39,268 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 1969-12-31 21:13:21 Z INFO 2025-06-26 15:27:39,268 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 1969-12-31 21:13:21 Z INFO 2025-06-26 15:27:39,271 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2009.309.01/lopc.nc INFO 2025-06-26 15:27:39,272 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 15:27:39 2025 Elapsed processing time from start of processing = 1 seconds INFO 2025-06-26 15:27:39,272 process.py calibrate():227 [1] Calibration steps for 2009.309.01 INFO 2025-06-26 15:27:39,355 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:27:39,357 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:27:40,056 calibrate.py _nudge_pos():1806 [1] 99: 0.140 0.0023074 -0.0001384 10250 34.16 10.025 -0.751 2009-11-05T18:03:52.462260992 INFO 2025-06-26 15:27:40,086 calibrate.py _nudge_pos():1806 [1] 102: 0.140 0.0001089 0.0000077 230 0.76 21.171 1.864 2009-11-05T18:04:40.458972928 INFO 2025-06-26 15:27:46,371 calibrate.py _nudge_pos():1862 [1] 740: - - - 1 0.00 - - INFO 2025-06-26 15:27:46,371 calibrate.py _nudge_pos():1868 [1] Points in final series = 14163 WARNING 2025-06-26 15:27:46,394 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:27:46,513 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:27:46,641 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 32 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:27:46,729 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 32 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:27:46,731 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2009.309.01/ctd1.nc INFO 2025-06-26 15:27:46,732 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:27:46,732 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:27:46,732 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:27:46,846 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:27:46,934 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:27:46,936 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2009.309.01/ctd2.nc INFO 2025-06-26 15:27:46,937 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 15:27:46,937 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:27:46,937 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 15:27:46,948 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 15:27:47,074 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 63 64 65 66 67 68 69 70 71 120 121 122 240 2220 13320 13321 28560 37740 37741 64320 64321 64322 104460 104461 104462 104463 111900 111901 111902 111903 111904 114720 114721 126780] INFO 2025-06-26 15:27:47,101 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -2 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 15:27:47,106 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 15:27:47,115 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2009.309.01 INFO 2025-06-26 15:27:47,121 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2009.309.01/dorado_2009.309.01_cal.nc INFO 2025-06-26 15:27:47,172 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:27:47,177 process.py align():251 [1] Alignment steps for 2009.309.01 INFO 2025-06-26 15:27:47,201 align.py process_cal():139 [1] Processing dorado_2009.309.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2009.309.01 INFO 2025-06-26 15:27:47,209 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:27:47,211 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:27:47,229 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:27:47,231 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:27:47,247 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:27:47,249 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:27:47,260 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:27:47,260 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:27:47,267 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:27:47,269 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:27:47,287 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,289 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,305 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,307 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,323 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,325 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,340 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,343 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,359 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,361 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,376 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,378 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,394 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,396 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,412 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,414 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,430 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,432 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,448 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,450 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,466 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,468 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,484 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,486 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,502 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,503 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,520 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,522 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,538 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,541 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,558 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,560 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,577 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,579 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,596 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,598 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,614 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,617 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,633 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.309.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:27:47,635 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:27:47,655 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 15:27:47,672 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 15:27:47,690 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 15:27:47,709 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 15:27:47,728 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:27:47,747 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:27:47,764 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:27:47,781 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:27:47,798 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:27:47,816 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.07 INFO 2025-06-26 15:27:47,828 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2009.309.01/dorado_2009.309.01_align.nc INFO 2025-06-26 15:27:47,880 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:27:47,883 process.py resample():273 [1] Resampling steps for 2009.309.01 INFO 2025-06-26 15:27:47,884 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:27:47,908 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.309.01/dorado_2009.309.01_align.nc mission netCDF file INFO 2025-06-26 15:27:47,913 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.309.01/dorado_2009.309.01_align.nc mission netCDF file INFO 2025-06-26 15:27:47,914 resample.py get_mission_start_end():1145 [1] navigation: 2009-11-05T17:28:38.317089792 to 2009-11-05T18:15:50.663060992 (0 days 00:33:46.316209920 before mission_end) WARNING 2025-06-26 15:27:47,915 resample.py get_mission_start_end():1156 [1] Instrument navigation has a gap > 5 minutes at the end of the mission: 0 days 00:33:46.316209920 INFO 2025-06-26 15:27:47,916 resample.py get_mission_start_end():1145 [1] hs2 : 2009-11-05T17:28:12.318870784 to 2009-11-05T18:15:50.823049728 (0 days 00:33:46.156221184 before mission_end) WARNING 2025-06-26 15:27:47,917 resample.py get_mission_start_end():1156 [1] Instrument hs2 has a gap > 5 minutes at the end of the mission: 0 days 00:33:46.156221184 INFO 2025-06-26 15:27:47,918 resample.py get_mission_start_end():1145 [1] ctd1 : 2009-11-05T17:28:39.127034368 to 2009-11-05T18:15:50.813050624 (0 days 00:33:46.166220288 before mission_end) WARNING 2025-06-26 15:27:47,919 resample.py get_mission_start_end():1156 [1] Instrument ctd1 has a gap > 5 minutes at the end of the mission: 0 days 00:33:46.166220288 INFO 2025-06-26 15:27:47,920 resample.py get_mission_start_end():1145 [1] ctd2 : 2009-11-05T17:28:34.187372800 to 2009-11-05T18:15:50.603065088 (0 days 00:33:46.376205824 before mission_end) WARNING 2025-06-26 15:27:47,921 resample.py get_mission_start_end():1156 [1] Instrument ctd2 has a gap > 5 minutes at the end of the mission: 0 days 00:33:46.376205824 INFO 2025-06-26 15:27:47,922 resample.py get_mission_start_end():1145 [1] isus : 2009-11-05T17:29:24.363935488 to 2009-11-05T18:15:50.003106048 (0 days 00:33:46.976164864 before mission_end) WARNING 2025-06-26 15:27:47,922 resample.py get_mission_start_end():1156 [1] Instrument isus has a gap > 5 minutes at the end of the mission: 0 days 00:33:46.976164864 INFO 2025-06-26 15:27:47,923 resample.py get_mission_start_end():1145 [1] biolume : 2009-11-05T17:28:04.899344896 to 2009-11-05T18:15:49.353116160 (0 days 00:33:47.626154752 before mission_end) WARNING 2025-06-26 15:27:47,924 resample.py get_mission_start_end():1156 [1] Instrument biolume has a gap > 5 minutes at the end of the mission: 0 days 00:33:47.626154752 INFO 2025-06-26 15:27:47,925 resample.py get_mission_start_end():1145 [1] lopc : 2009-11-05T18:02:21.979270912 to 2009-11-05T18:49:36.979270912 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:27:47,927 resample.py get_mission_start_end():1145 [1] tailcone : 2009-11-05T17:28:09.919035136 to 2009-11-05T18:15:50.223090944 (0 days 00:33:46.756179968 before mission_end) WARNING 2025-06-26 15:27:47,928 resample.py get_mission_start_end():1156 [1] Instrument tailcone has a gap > 5 minutes at the end of the mission: 0 days 00:33:46.756179968 INFO 2025-06-26 15:27:47,928 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.309.01/dorado_2009.309.01_align.nc mission netCDF file INFO 2025-06-26 15:27:47,929 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:47,984 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:47,984 resample.py resample_variable():1038 [1] Padding navigation_roll with 0 days 00:33:46.316209920 of NaNs to the end of mission INFO 2025-06-26 15:27:47,997 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:47,997 resample.py resample_variable():1038 [1] Padding navigation_pitch with 0 days 00:33:46.316209920 of NaNs to the end of mission INFO 2025-06-26 15:27:48,010 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,010 resample.py resample_variable():1038 [1] Padding navigation_yaw with 0 days 00:33:46.316209920 of NaNs to the end of mission INFO 2025-06-26 15:27:48,023 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,023 resample.py resample_variable():1038 [1] Padding navigation_mWaterSpeed with 0 days 00:33:46.316209920 of NaNs to the end of mission INFO 2025-06-26 15:27:48,037 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,037 resample.py resample_variable():1038 [1] Padding hs2_bbp420 with 0 days 00:33:46.156221184 of NaNs to the end of mission INFO 2025-06-26 15:27:48,051 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,051 resample.py resample_variable():1038 [1] Padding hs2_bbp700 with 0 days 00:33:46.156221184 of NaNs to the end of mission INFO 2025-06-26 15:27:48,065 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,065 resample.py resample_variable():1038 [1] Padding hs2_fl700 with 0 days 00:33:46.156221184 of NaNs to the end of mission INFO 2025-06-26 15:27:48,078 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,078 resample.py resample_variable():1038 [1] Padding ctd1_temperature with 0 days 00:33:46.166220288 of NaNs to the end of mission INFO 2025-06-26 15:27:48,090 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,090 resample.py resample_variable():1038 [1] Padding ctd1_conductivity with 0 days 00:33:46.166220288 of NaNs to the end of mission INFO 2025-06-26 15:27:48,101 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,102 resample.py resample_variable():1038 [1] Padding ctd1_salinity with 0 days 00:33:46.166220288 of NaNs to the end of mission INFO 2025-06-26 15:27:48,112 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,112 resample.py resample_variable():1038 [1] Padding ctd1_temperature_onboard with 0 days 00:33:46.166220288 of NaNs to the end of mission INFO 2025-06-26 15:27:48,123 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,123 resample.py resample_variable():1038 [1] Padding ctd1_conductivity_onboard with 0 days 00:33:46.166220288 of NaNs to the end of mission INFO 2025-06-26 15:27:48,134 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,134 resample.py resample_variable():1038 [1] Padding ctd1_dissolvedO2 with 0 days 00:33:46.166220288 of NaNs to the end of mission INFO 2025-06-26 15:27:48,145 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,145 resample.py resample_variable():1038 [1] Padding ctd1_oxygen_mll with 0 days 00:33:46.166220288 of NaNs to the end of mission INFO 2025-06-26 15:27:48,156 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,156 resample.py resample_variable():1038 [1] Padding ctd1_oxygen_umolkg with 0 days 00:33:46.166220288 of NaNs to the end of mission INFO 2025-06-26 15:27:48,167 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,167 resample.py resample_variable():1038 [1] Padding ctd1_flow1 with 0 days 00:33:46.166220288 of NaNs to the end of mission INFO 2025-06-26 15:27:48,180 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,180 resample.py resample_variable():1038 [1] Padding ctd2_temperature with 0 days 00:33:46.376205824 of NaNs to the end of mission INFO 2025-06-26 15:27:48,191 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,191 resample.py resample_variable():1038 [1] Padding ctd2_conductivity with 0 days 00:33:46.376205824 of NaNs to the end of mission INFO 2025-06-26 15:27:48,203 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,203 resample.py resample_variable():1038 [1] Padding ctd2_salinity with 0 days 00:33:46.376205824 of NaNs to the end of mission INFO 2025-06-26 15:27:48,215 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,215 resample.py resample_variable():1038 [1] Padding ctd2_temperature_onboard with 0 days 00:33:46.376205824 of NaNs to the end of mission INFO 2025-06-26 15:27:48,226 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,226 resample.py resample_variable():1038 [1] Padding ctd2_conductivity_onboard with 0 days 00:33:46.376205824 of NaNs to the end of mission INFO 2025-06-26 15:27:48,238 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,238 resample.py resample_variable():1038 [1] Padding ctd2_flow2 with 0 days 00:33:46.376205824 of NaNs to the end of mission INFO 2025-06-26 15:27:48,248 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,248 resample.py resample_variable():1038 [1] Padding isus_nitrate with 0 days 00:33:46.976164864 of NaNs to the end of mission INFO 2025-06-26 15:27:48,258 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,258 resample.py resample_variable():1038 [1] Padding isus_temp with 0 days 00:33:46.976164864 of NaNs to the end of mission INFO 2025-06-26 15:27:48,267 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,267 resample.py resample_variable():1038 [1] Padding isus_quality with 0 days 00:33:46.976164864 of NaNs to the end of mission INFO 2025-06-26 15:27:48,278 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,278 resample.py resample_variable():1038 [1] Padding biolume_flow with 0 days 00:33:47.626154752 of NaNs to the end of mission INFO 2025-06-26 15:27:48,287 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,295 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,303 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,311 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,320 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,329 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:27:48,329 resample.py resample_variable():1038 [1] Padding tailcone_propRpm with 0 days 00:33:46.756179968 of NaNs to the end of mission INFO 2025-06-26 15:27:48,452 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2009.309.01/dorado_2009.309.01_1S.nc INFO 2025-06-26 15:27:51,218 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 15:27:51,552 create_products.py gulper_odv():522 [1] Wrote 2 Gulper data lines to /data/auv_data/dorado/missionodvs/2009.309.01/dorado_2009.309.01_1S_Gulper.txt INFO 2025-06-26 15:27:51,552 process.py archive():337 [1] Archiving steps for 2009.309.01 INFO 2025-06-26 15:27:51,552 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2009.309.01/dorado_2009.309.01, BASE_PATH = /data/auv_data INFO 2025-06-26 15:27:51,552 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2009.309.01/dorado_2009.309.01 files to /Volumes/AUVCTD/surveys/2009/netcdf INFO 2025-06-26 15:27:51,554 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.309.01_1S.nc INFO 2025-06-26 15:27:51,563 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.01/dorado_2009.309.01_1S.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:27:51,563 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.309.01_cal.nc INFO 2025-06-26 15:27:51,580 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.01/dorado_2009.309.01_cal.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:27:51,581 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.309.01_align.nc INFO 2025-06-26 15:27:51,597 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.01/dorado_2009.309.01_align.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:27:51,607 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.01 done. INFO 2025-06-26 15:27:51,615 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.01 done. INFO 2025-06-26 15:27:51,619 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.01 done. INFO 2025-06-26 15:27:51,627 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.01 done. INFO 2025-06-26 15:27:51,641 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.01 done. INFO 2025-06-26 15:27:51,645 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.01 done. INFO 2025-06-26 15:27:51,653 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.01 done. INFO 2025-06-26 15:27:51,658 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.01 done. INFO 2025-06-26 15:27:51,669 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.01 done. INFO 2025-06-26 15:27:51,683 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.01/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009309/2009.309.01 done. INFO 2025-06-26 15:27:51,683 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:27:51,685 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2009/odv/dorado_2009.309.01_1S_Gulper.txt INFO 2025-06-26 15:27:51,689 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2009.309.01/dorado_2009.309.01_1S_Gulper.txt /Volumes/AUVCTD/surveys/2009/odv done. INFO 2025-06-26 15:27:51,689 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.309.01/dorado_2009.309.01_processing.log /Volumes/AUVCTD/surveys/2009/netcdf