INFO 2025-06-26 15:20:34,013 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:20:34,014 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Problem in mergeDVL with GPS reoutine where survey distance got shortened - ctdToUse = ctd1 INFO 2025-06-26 15:20:34,014 process.py process_mission():449 [1] Processing AUVCTD mission 2009.280.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:20:34,014 process.py download_process():165 [1] Download and processing steps for 2009.280.00 INFO 2025-06-26 15:20:34,014 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2009/2009280/2009.280.00 INFO 2025-06-26 15:20:34,014 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2009/2009280/2009.280.00 to /data/auv_data/dorado/missionlogs/2009.280.00 INFO 2025-06-26 15:20:42,382 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2009.280.00 INFO 2025-06-26 15:20:42,382 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.280.00/ctdDriver.log (23983686 bytes) INFO 2025-06-26 15:20:44,152 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.280.00/ctdDriver.log: [ 4577 7319 16120 18112 18859 23390 23677 25214 28925 39371 39451 41795 42979 43919 54097 56409 57039 63124 64524 76783 89236 95405 96350 110436 118875 121346 126371 126736 129029 133868 136976 141841 143863 149960 151316 156357 159827 163854 181757 182229 193841 203041 206371 213250 217266 232058 238820 242422] INFO 2025-06-26 15:20:44,228 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.280.00/ctdDriver2.log (23993375 bytes) INFO 2025-06-26 15:20:45,923 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.280.00/ctdDriver2.log: [ 10125 13959 14920 15557 21631 25326 26883 29235 29276 36801 41326 41895 43079 50864 51056 54197 63224 64624 68002 75112 76884 80669 89338 90644 95507 96452 110537 118976 121447 126472 133969 137077 141942 148960 150061 156458 159928 163955 181858 182330 193942 203142 206472 213351 217367 232159 238921 242523] INFO 2025-06-26 15:20:46,003 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.280.00/gps.log (327380 bytes) INFO 2025-06-26 15:20:46,047 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.280.00/hydroscatlog.log (20990446 bytes) INFO 2025-06-26 15:20:48,181 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.280.00/hydroscatlog.log: [ 4754 14032 21594 23002 25006 26949 29342 29714 37317 53828 55527 60940 63272 64672 73751 80502 82267 85068 89029 89115 90116 97423 103648 126489 135452 139135 156460 157036 166114 166460 170642 174368 179243 186429 193027 197252 210226 213064 213323 226580 236185 238663 238878 240609 244391] INFO 2025-06-26 15:20:48,249 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.280.00/navigation.log (73682630 bytes) INFO 2025-06-26 15:20:53,876 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.280.00/isuslog.log (1448949 bytes) INFO 2025-06-26 15:20:54,014 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.280.00/isuslog.log: [1 2 3 4 5 7 8] INFO 2025-06-26 15:20:54,019 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.280.00/parosci.log (25578662 bytes) INFO 2025-06-26 15:20:56,292 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.280.00/tailCone.log (14982859 bytes) INFO 2025-06-26 15:20:58,170 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.280.00/biolume.log (17006668 bytes) INFO 2025-06-26 15:20:59,858 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 15:21:00,752 logs2netcdfs.py download_process_logs():807 [1] Time to process: 18.37 seconds INFO 2025-06-26 15:21:00,752 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2009.280.00/lopc.bin (76641517 bytes) INFO 2025-06-26 15:21:00,753 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:21:00 2025 INFO 2025-06-26 15:21:00,753 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2009.280.00/parosci.nc INFO 2025-06-26 15:21:00,753 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:21:00,753 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2009.280.00/parosci.nc INFO 2025-06-26 15:21:00,756 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1254950013.0, sensor_off_time = 1255012519.5 INFO 2025-06-26 15:21:00,756 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 62506 seconds. Expecting to read 125012 L frames from the lopc.bin file. INFO 2025-06-26 15:21:00,756 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 125012 records from the lopc.bin file. INFO 2025-06-26 15:21:01,514 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2009-10-07 21:13:33 Z and endTime = 2009-10-08 14:35:19 Z with 125012 records expected to be read from lopc.bin INFO 2025-06-26 15:21:01,514 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2009.280.00/lopc.bin INFO 2025-06-26 15:21:01,514 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2009.280.00/lopc.nc INFO 2025-06-26 15:21:01,514 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2009.280.00/lopc.nc INFO 2025-06-26 15:21:01,515 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2009.280.00 INFO 2025-06-26 15:21:01,515 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 15:21:01,619 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 15:21:01,619 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 15:21:01,620 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-26 15:21:12,056 lopcToNetCDF.py unpackLOPCbin():1013 [1] 10000 10096 27960 0 0 0 0 96 10.5 seconds, last L Frame: 125012 INFO 2025-06-26 15:21:20,092 lopcToNetCDF.py unpackLOPCbin():1013 [1] 20000 20200 48236 0 0 0 0 200 8.0 seconds, last L Frame: 125012 INFO 2025-06-26 15:21:25,807 lopcToNetCDF.py unpackLOPCbin():1013 [1] 30000 30293 61637 0 0 0 0 293 5.7 seconds, last L Frame: 125012 INFO 2025-06-26 15:21:32,193 lopcToNetCDF.py unpackLOPCbin():1013 [1] 40000 40383 77283 0 0 0 0 383 6.4 seconds, last L Frame: 125012 INFO 2025-06-26 15:21:40,001 lopcToNetCDF.py unpackLOPCbin():1013 [1] 50000 50488 97203 1 0 0 0 487 7.8 seconds, last L Frame: 125012 INFO 2025-06-26 15:21:48,305 lopcToNetCDF.py unpackLOPCbin():1013 [1] 60000 60593 117540 1 0 0 0 592 8.3 seconds, last L Frame: 125012 INFO 2025-06-26 15:21:54,720 lopcToNetCDF.py unpackLOPCbin():1013 [1] 70000 5384 132111 1 0 0 0 919 6.4 seconds, last L Frame: 125012 ERROR 2025-06-26 15:22:05,690 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 15:22:05,694 process.py calibrate():227 [1] Calibration steps for 2009.280.00 INFO 2025-06-26 15:22:06,341 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:22:06,343 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:22:07,104 calibrate.py _nudge_pos():1806 [1] 100: 0.030 -0.0000326 -0.0003427 2105 7.01 -0.689 -9.054 2009-10-07T21:22:11.040055808 INFO 2025-06-26 15:22:07,796 calibrate.py _nudge_pos():1806 [1] 169: 0.050 0.0006125 -0.0000615 13212 44.06 2.061 -0.259 2009-10-07T22:07:23.034271488 INFO 2025-06-26 15:22:08,703 calibrate.py _nudge_pos():1806 [1] 257: 0.050 0.0002049 -0.0000260 5351 17.85 1.702 -0.270 2009-10-07T22:26:41.034942976 INFO 2025-06-26 15:22:09,157 calibrate.py _nudge_pos():1806 [1] 302: 0.060 0.0002930 -0.0000581 7096 23.66 1.835 -0.455 2009-10-07T22:51:05.034652160 INFO 2025-06-26 15:22:09,179 calibrate.py _nudge_pos():1806 [1] 304: 0.050 0.0000077 -0.0000286 105 0.35 3.281 -15.279 2009-10-07T22:51:27.043144448 INFO 2025-06-26 15:22:09,799 calibrate.py _nudge_pos():1806 [1] 365: 0.050 0.0000211 0.0000025 20 0.06 49.401 7.254 2009-10-07T22:52:31.038760448 INFO 2025-06-26 15:22:09,943 calibrate.py _nudge_pos():1806 [1] 379: 0.050 0.0000094 -0.0000292 2051 6.85 0.202 -0.790 2009-10-07T22:59:35.039714560 INFO 2025-06-26 15:22:10,734 calibrate.py _nudge_pos():1806 [1] 456: 0.060 -0.0005295 -0.0014341 12877 42.93 -1.827 -6.190 2009-10-07T23:43:47.038040064 INFO 2025-06-26 15:22:11,472 calibrate.py _nudge_pos():1806 [1] 523: 0.060 -0.0000003 0.0000009 15 0.05 -0.993 3.546 2009-10-07T23:44:56.043313152 INFO 2025-06-26 15:22:11,693 calibrate.py _nudge_pos():1806 [1] 544: 0.070 -0.0005356 -0.0014058 12927 43.11 -1.840 -6.042 2009-10-08T00:28:23.034721792 INFO 2025-06-26 15:22:12,549 calibrate.py _nudge_pos():1806 [1] 627: 0.070 -0.0001020 -0.0001850 2860 9.53 -1.585 -3.596 2009-10-08T00:39:17.039919360 INFO 2025-06-26 15:22:13,232 calibrate.py _nudge_pos():1806 [1] 692: 0.080 0.0034738 0.0019828 13951 46.53 11.063 7.896 2009-10-08T01:26:53.034270208 INFO 2025-06-26 15:22:14,107 calibrate.py _nudge_pos():1806 [1] 776: 0.080 0.0034476 0.0018021 14280 47.61 10.734 7.013 2009-10-08T02:15:53.042865920 INFO 2025-06-26 15:22:14,994 calibrate.py _nudge_pos():1806 [1] 861: 0.100 0.0035168 0.0015585 13940 46.50 11.216 6.211 2009-10-08T03:03:47.035984128 INFO 2025-06-26 15:22:15,825 calibrate.py _nudge_pos():1806 [1] 940: 0.110 0.0022635 0.0004579 5610 18.70 17.955 4.538 2009-10-08T03:23:47.033778432 INFO 2025-06-26 15:22:15,857 calibrate.py _nudge_pos():1806 [1] 943: 0.100 -0.0001863 -0.0000013 40 0.13 -212.223 -1.828 2009-10-08T03:23:57.043092736 INFO 2025-06-26 15:22:16,583 calibrate.py _nudge_pos():1806 [1] 1011: 0.110 0.0002364 0.0000066 10410 34.73 1.009 0.035 2009-10-08T03:59:48.035739648 INFO 2025-06-26 15:22:16,895 calibrate.py _nudge_pos():1806 [1] 1040: 0.110 0.0000511 -0.0000716 2494 8.31 0.912 -1.597 2009-10-08T04:08:35.039637504 INFO 2025-06-26 15:22:17,798 calibrate.py _nudge_pos():1806 [1] 1125: 0.120 0.0004424 -0.0000969 12774 42.60 1.539 -0.421 2009-10-08T04:52:35.038785280 INFO 2025-06-26 15:22:18,698 calibrate.py _nudge_pos():1806 [1] 1210: 0.120 0.0000250 -0.0000480 2426 8.10 0.457 -1.097 2009-10-08T05:02:05.039737344 INFO 2025-06-26 15:22:18,753 calibrate.py _nudge_pos():1806 [1] 1215: 0.120 0.0000331 -0.0000102 50 0.16 30.015 -11.549 2009-10-08T05:02:19.038778368 INFO 2025-06-26 15:22:19,413 calibrate.py _nudge_pos():1806 [1] 1278: 0.130 -0.0005333 -0.0014012 12727 42.43 -1.862 -6.119 2009-10-08T05:45:47.040118016 INFO 2025-06-26 15:22:20,362 calibrate.py _nudge_pos():1806 [1] 1367: 0.140 -0.0005881 -0.0014552 12996 43.33 -2.011 -6.223 2009-10-08T06:30:35.035977728 INFO 2025-06-26 15:22:21,223 calibrate.py _nudge_pos():1806 [1] 1447: 0.150 -0.0001604 -0.0002742 3413 11.38 -2.088 -4.465 2009-10-08T06:43:17.033777152 INFO 2025-06-26 15:22:21,278 calibrate.py _nudge_pos():1806 [1] 1452: 0.130 0.0000042 0.0000125 105 0.35 1.782 6.671 2009-10-08T06:43:42.042064128 INFO 2025-06-26 15:22:21,935 calibrate.py _nudge_pos():1806 [1] 1513: 0.150 0.0034110 0.0019836 13997 46.68 10.828 7.874 2009-10-08T07:31:23.036072448 INFO 2025-06-26 15:22:22,856 calibrate.py _nudge_pos():1806 [1] 1597: 0.160 0.0037727 0.0020237 14130 47.11 11.871 7.959 2009-10-08T08:19:53.036723968 INFO 2025-06-26 15:22:23,643 calibrate.py _nudge_pos():1806 [1] 1670: 0.170 0.0041389 0.0017976 13913 46.40 13.229 7.179 2009-10-08T09:07:29.041074176 INFO 2025-06-26 15:22:24,555 calibrate.py _nudge_pos():1806 [1] 1754: 0.170 0.0013634 -0.0001349 3034 10.11 19.995 -2.472 2009-10-08T09:18:59.033806592 INFO 2025-06-26 15:22:24,588 calibrate.py _nudge_pos():1806 [1] 1757: 0.170 0.0000181 0.0000096 85 0.28 9.600 6.376 2009-10-08T09:19:18.042504192 INFO 2025-06-26 15:22:25,322 calibrate.py _nudge_pos():1806 [1] 1825: 0.170 0.0002204 -0.0000395 11532 38.46 0.850 -0.190 2009-10-08T09:58:53.039805952 INFO 2025-06-26 15:22:28,498 calibrate.py _nudge_pos():1806 [1] 2116: 0.190 0.0003674 -0.0000157 12822 42.76 1.273 -0.068 2009-10-08T10:46:29.034156800 INFO 2025-06-26 15:22:29,433 calibrate.py _nudge_pos():1806 [1] 2201: 0.190 0.0002369 -0.0000965 10163 33.90 1.036 -0.527 2009-10-08T11:21:47.039063552 INFO 2025-06-26 15:22:30,181 calibrate.py _nudge_pos():1806 [1] 2268: 0.200 -0.0005039 -0.0014832 12925 43.09 -1.733 -6.378 2009-10-08T12:05:59.037389312 INFO 2025-06-26 15:22:31,090 calibrate.py _nudge_pos():1806 [1] 2351: 0.010 -0.0005574 -0.0015086 12991 43.33 -1.906 -6.451 2009-10-08T12:50:41.233646080 INFO 2025-06-26 15:22:31,896 calibrate.py _nudge_pos():1806 [1] 2424: 0.010 -0.0001633 -0.0003471 3749 12.50 -1.936 -5.147 2009-10-08T13:04:23.237335040 INFO 2025-06-26 15:22:31,931 calibrate.py _nudge_pos():1806 [1] 2427: 0.010 -0.0000052 -0.0000017 75 0.25 -3.116 -1.314 2009-10-08T13:04:40.236170496 INFO 2025-06-26 15:22:32,644 calibrate.py _nudge_pos():1806 [1] 2491: 0.010 0.0033708 0.0020136 13937 46.48 10.747 8.028 2009-10-08T13:52:12.240794880 INFO 2025-06-26 15:22:33,604 calibrate.py _nudge_pos():1806 [1] 2576: 0.010 0.0006897 0.0003836 2724 9.08 11.257 7.828 2009-10-08T14:02:41.237705728 INFO 2025-06-26 15:22:55,711 calibrate.py _nudge_pos():1862 [1] 4502: - - - 1 0.00 - - INFO 2025-06-26 15:22:55,712 calibrate.py _nudge_pos():1868 [1] Points in final series = 312074 WARNING 2025-06-26 15:22:56,126 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:23:27,616 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 53 of 249829 INFO 2025-06-26 15:23:29,573 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 6 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:23:47,569 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 50 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:23:49,458 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 50 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:23:49,462 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2009.280.00/ctd1.nc INFO 2025-06-26 15:23:49,464 calibrate.py _range_qc_combined_nc():898 [1] Setting 4 ctd1_salinity values to NaN INFO 2025-06-26 15:23:49,464 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:23:49,464 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:24:03,364 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:24:05,261 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:24:05,265 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2009.280.00/ctd2.nc INFO 2025-06-26 15:24:05,266 calibrate.py _range_qc_combined_nc():898 [1] Setting 268 ctd2_salinity values to NaN INFO 2025-06-26 15:24:05,267 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:24:05,267 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 15:24:07,431 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 15:24:10,243 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 ... 3728286 3728287 3728288] INFO 2025-06-26 15:24:10,838 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 15:24:10,845 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 15:24:10,845 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2009.280.00 ERROR 2025-06-26 15:24:10,845 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2009.280.00 INFO 2025-06-26 15:24:11,156 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2009.280.00/dorado_2009.280.00_cal.nc INFO 2025-06-26 15:24:38,322 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:24:38,331 process.py align():251 [1] Alignment steps for 2009.280.00 INFO 2025-06-26 15:24:38,372 align.py process_cal():139 [1] Processing dorado_2009.280.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2009.280.00 INFO 2025-06-26 15:24:38,456 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:24:38,465 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:24:38,662 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:24:38,672 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:24:38,866 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:24:38,879 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:24:38,994 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:24:38,994 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:24:39,069 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:24:39,079 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:24:39,273 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:39,283 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:39,448 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:39,457 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:39,638 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:39,652 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:39,823 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:39,832 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:40,008 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:40,018 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:40,184 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:40,193 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:40,365 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:40,374 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:40,540 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:40,550 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:40,717 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:40,727 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:40,892 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:40,903 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:41,074 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:41,083 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:41,249 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:41,258 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:41,429 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:41,438 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:41,603 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:41,612 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:41,783 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:41,792 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:41,957 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:41,967 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:42,135 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:42,146 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:42,312 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:42,321 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:42,490 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:42,500 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:42,669 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:42,678 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:42,848 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:42,857 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:43,025 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.280.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:24:43,033 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:24:43,239 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.72 INFO 2025-06-26 15:24:43,362 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.72 INFO 2025-06-26 15:24:43,489 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.72 INFO 2025-06-26 15:24:43,622 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 15:24:43,761 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 15:24:43,888 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2009.280.00/dorado_2009.280.00_align.nc INFO 2025-06-26 15:24:44,046 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:24:44,049 process.py resample():273 [1] Resampling steps for 2009.280.00 INFO 2025-06-26 15:24:44,049 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:24:44,083 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.280.00/dorado_2009.280.00_align.nc mission netCDF file INFO 2025-06-26 15:24:44,092 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.280.00/dorado_2009.280.00_align.nc mission netCDF file INFO 2025-06-26 15:24:44,094 resample.py get_mission_start_end():1145 [1] navigation: 2009-10-07T21:14:04.803365376 to 2009-10-08T14:35:19.433560064 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:24:44,096 resample.py get_mission_start_end():1145 [1] hs2 : 2009-10-07T21:13:39.035130624 to 2009-10-08T14:35:19.353565440 (0 days 00:00:00.079994624 before mission_end) INFO 2025-06-26 15:24:44,099 resample.py get_mission_start_end():1145 [1] ctd1 : 2009-10-07T21:14:23.422089728 to 2009-10-08T14:35:19.433560064 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:24:44,101 resample.py get_mission_start_end():1145 [1] ctd2 : 2009-10-07T21:13:58.743780352 to 2009-10-08T14:35:19.423560704 (0 days 00:00:00.009999360 before mission_end) INFO 2025-06-26 15:24:44,103 resample.py get_mission_start_end():1145 [1] isus : 2009-10-07T21:14:32.321480192 to 2009-10-08T14:35:19.233573632 (0 days 00:00:00.199986432 before mission_end) INFO 2025-06-26 15:24:44,105 resample.py get_mission_start_end():1145 [1] biolume : 2009-10-07T21:13:31.725597184 to 2009-10-08T14:35:18.043621120 (0 days 00:00:01.389938944 before mission_end) INFO 2025-06-26 15:24:44,107 resample.py get_mission_start_end():1145 [1] tailcone : 2009-10-07T21:13:33.445513472 to 2009-10-08T14:35:19.383563520 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 15:24:44,108 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.280.00/dorado_2009.280.00_align.nc mission netCDF file INFO 2025-06-26 15:24:44,108 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:44,751 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:44,854 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:44,954 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:45,054 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:45,142 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:45,223 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:45,303 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:45,383 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:45,460 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:45,544 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:45,623 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:45,703 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:45,781 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:45,860 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:45,938 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:46,016 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:46,095 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:46,174 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:46,257 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:46,344 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:46,425 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:46,507 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:46,589 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:46,673 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:46,706 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:46,734 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:46,759 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:46,790 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:46,884 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:24:47,345 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2009.280.00/dorado_2009.280.00_1S.nc INFO 2025-06-26 15:24:50,509 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 15:24:59,204 create_products.py gulper_odv():522 [1] Wrote 8 Gulper data lines to /data/auv_data/dorado/missionodvs/2009.280.00/dorado_2009.280.00_1S_Gulper.txt INFO 2025-06-26 15:24:59,204 process.py archive():337 [1] Archiving steps for 2009.280.00 INFO 2025-06-26 15:24:59,204 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2009.280.00/dorado_2009.280.00, BASE_PATH = /data/auv_data INFO 2025-06-26 15:24:59,206 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2009.280.00/dorado_2009.280.00 files to /Volumes/AUVCTD/surveys/2009/netcdf INFO 2025-06-26 15:24:59,207 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.280.00_1S.nc INFO 2025-06-26 15:24:59,254 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.280.00/dorado_2009.280.00_1S.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:24:59,255 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.280.00_cal.nc INFO 2025-06-26 15:24:59,489 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.280.00/dorado_2009.280.00_cal.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:24:59,490 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.280.00_align.nc INFO 2025-06-26 15:24:59,710 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.280.00/dorado_2009.280.00_align.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:24:59,774 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.280.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009280/2009.280.00 done. INFO 2025-06-26 15:24:59,839 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.280.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009280/2009.280.00 done. INFO 2025-06-26 15:24:59,845 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.280.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009280/2009.280.00 done. INFO 2025-06-26 15:24:59,903 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.280.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009280/2009.280.00 done. INFO 2025-06-26 15:25:00,088 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.280.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009280/2009.280.00 done. INFO 2025-06-26 15:25:00,097 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.280.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009280/2009.280.00 done. INFO 2025-06-26 15:25:00,165 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.280.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009280/2009.280.00 done. INFO 2025-06-26 15:25:00,219 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.280.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009280/2009.280.00 done. INFO 2025-06-26 15:25:00,384 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.280.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009280/2009.280.00 done. INFO 2025-06-26 15:25:00,505 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.280.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009280/2009.280.00 done. INFO 2025-06-26 15:25:00,505 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:25:00,507 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2009/odv/dorado_2009.280.00_1S_Gulper.txt INFO 2025-06-26 15:25:00,511 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2009.280.00/dorado_2009.280.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2009/odv done. INFO 2025-06-26 15:25:00,511 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.280.00/dorado_2009.280.00_processing.log /Volumes/AUVCTD/surveys/2009/netcdf