INFO 2025-06-26 15:11:44,896 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:11:44,896 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Yanwu's detection - bottle tripping algorithm - ctdToUse = ctd1 INFO 2025-06-26 15:11:44,896 process.py process_mission():449 [1] Processing AUVCTD mission 2009.274.03 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:11:44,896 process.py download_process():165 [1] Download and processing steps for 2009.274.03 INFO 2025-06-26 15:11:44,896 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2009/2009274/2009.274.03 INFO 2025-06-26 15:11:44,896 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2009/2009274/2009.274.03 to /data/auv_data/dorado/missionlogs/2009.274.03 INFO 2025-06-26 15:11:48,994 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2009.274.03 INFO 2025-06-26 15:11:48,994 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.274.03/ctdDriver.log (8713062 bytes) INFO 2025-06-26 15:11:49,652 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.274.03/ctdDriver2.log (8712959 bytes) INFO 2025-06-26 15:11:50,347 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.274.03/gps.log (65516 bytes) INFO 2025-06-26 15:11:50,363 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.274.03/hydroscatlog.log (7627810 bytes) INFO 2025-06-26 15:11:51,251 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.274.03/navigation.log (26767482 bytes) INFO 2025-06-26 15:11:53,196 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.274.03/isuslog.log (531125 bytes) INFO 2025-06-26 15:11:53,250 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.274.03/isuslog.log: [1 2 3 4 6 7 8] INFO 2025-06-26 15:11:53,251 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.274.03/parosci.log (9304502 bytes) INFO 2025-06-26 15:11:54,055 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.274.03/tailCone.log (5451883 bytes) INFO 2025-06-26 15:11:54,728 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.274.03/biolume.log (6182156 bytes) INFO 2025-06-26 15:11:55,319 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 15:11:55,647 logs2netcdfs.py download_process_logs():807 [1] Time to process: 6.65 seconds INFO 2025-06-26 15:11:55,648 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2009.274.03/lopc.bin (29411913 bytes) INFO 2025-06-26 15:11:55,648 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:11:55 2025 INFO 2025-06-26 15:11:55,648 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2009.274.03/parosci.nc INFO 2025-06-26 15:11:55,648 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:11:55,648 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2009.274.03/parosci.nc INFO 2025-06-26 15:11:55,652 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1254415992.8, sensor_off_time = 1254438707.8 INFO 2025-06-26 15:11:55,652 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 22715 seconds. Expecting to read 45430 L frames from the lopc.bin file. INFO 2025-06-26 15:11:55,652 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 45430 records from the lopc.bin file. INFO 2025-06-26 15:11:55,921 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2009-10-01 16:53:12 Z and endTime = 2009-10-01 23:11:47 Z with 45430 records expected to be read from lopc.bin INFO 2025-06-26 15:11:55,922 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2009.274.03/lopc.bin INFO 2025-06-26 15:11:55,922 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2009.274.03/lopc.nc INFO 2025-06-26 15:11:55,922 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2009.274.03/lopc.nc INFO 2025-06-26 15:11:55,923 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2009.274.03 INFO 2025-06-26 15:11:55,923 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 15:11:56,017 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 15:11:56,017 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 15:11:56,017 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 15:11:58,328 lopcToNetCDF.py main():2340 [1] UnicodeDecodeError: 'utf-8' codec can't decode byte 0x9d in position 0: invalid start byte INFO 2025-06-26 15:11:58,329 lopcToNetCDF.py main():2341 [1] Failed to decode all of lopc.bin - resulting lopc.nc file likely incomplete INFO 2025-06-26 15:11:58,329 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2009.274.03/parosci.nc INFO 2025-06-26 15:11:58,329 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:11:58,329 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2009.274.03/parosci.nc INFO 2025-06-26 15:11:58,332 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1254415992.8, sensor_off_time = 1254438707.8 INFO 2025-06-26 15:11:58,333 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 22715 seconds. Expecting to read 45430 L frames from the lopc.bin file. INFO 2025-06-26 15:11:58,333 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 45430 records from the lopc.bin file. INFO 2025-06-26 15:11:58,333 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 93 and len(sampleCountList) = 2680 INFO 2025-06-26 15:11:58,333 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 15:11:58,333 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [ 93 94 95 ... 3112 3113 3114] INFO 2025-06-26 15:11:58,334 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 15:11:58,334 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 15:11:58,334 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [ 1 1 343 ... 1 1 1] INFO 2025-06-26 15:11:58,334 lopcToNetCDF.py deSpike():1590 [1] Found 1 spike indicators at indices: [3] INFO 2025-06-26 15:11:58,334 lopcToNetCDF.py deSpike():1595 [1] Identifying nature of spike value = 438 at index = 3 INFO 2025-06-26 15:11:58,334 lopcToNetCDF.py deSpike():1714 [1] This is the last element in spike_indx. No need to deSpike(). INFO 2025-06-26 15:11:58,334 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [ 93 94 95 ... 3112 3113 3114] INFO 2025-06-26 15:11:58,334 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [ 93 94 95 ... 3112 3113 3114] with len(correctedSampleCountList) = 2680 INFO 2025-06-26 15:11:58,335 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 93 from all values of correctedSampleCountList INFO 2025-06-26 15:11:58,335 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 15:11:58,335 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.0000e+00 5.0000e-01 1.0000e+00 ... 1.5095e+03 1.5100e+03 1.5105e+03] INFO 2025-06-26 15:11:58,335 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.25441599e+09 1.25441599e+09 1.25441599e+09 ... 1.25441750e+09 1.25441750e+09 1.25441750e+09] INFO 2025-06-26 15:11:58,335 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1254415992.8 1254415993.3, ..., timestampArray[-2:] = 1254417502.8 1254417503.3] INFO 2025-06-26 15:11:58,338 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1254415992.7685115), np.float64(1254415993.2685115)], ..., timestampList[-2:] = [np.float64(1254417502.7685115), np.float64(1254417503.2685115)]] INFO 2025-06-26 15:11:58,338 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 2680) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 15:11:58,338 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [2624, 2645] INFO 2025-06-26 15:11:58,338 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 126 INFO 2025-06-26 15:11:58,338 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 2680 INFO 2025-06-26 15:11:58,338 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1254415992.7685115), np.float64(1254415993.2685115)], ..., timestampList[-2:] = [np.float64(1254417502.7685115), np.float64(1254417503.2685115)]] INFO 2025-06-26 15:11:58,339 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 2680) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 15:11:58,339 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(2623), np.int32(2644)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 15:11:58,339 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 126 INFO 2025-06-26 15:11:58,339 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 ERROR 2025-06-26 15:11:58,339 lopcToNetCDF.py constructTimestampList():1501 [1] Cannot interpolate to cFrameEsecsListInterpolated: array of sample points is empty INFO 2025-06-26 15:11:58,342 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 126 INFO 2025-06-26 15:11:58,342 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1254416173.2685115)], ..., tsList[-2:] = [np.float64(1254417475.2685115), np.float64(1254417485.7685115)] INFO 2025-06-26 15:11:58,342 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2009-10-01 16:56:13 Z INFO 2025-06-26 15:11:58,342 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2009-10-01 17:18:05 Z INFO 2025-06-26 15:11:58,342 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 2651 INFO 2025-06-26 15:11:58,343 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [-9999], ..., cFrameEsecsList[-2:] = [-9999, -9999] INFO 2025-06-26 15:11:58,343 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 1969-12-31 21:13:21 Z INFO 2025-06-26 15:11:58,343 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 1969-12-31 21:13:21 Z INFO 2025-06-26 15:11:58,346 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2009.274.03/lopc.nc INFO 2025-06-26 15:11:58,346 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 15:11:58 2025 Elapsed processing time from start of processing = 2 seconds INFO 2025-06-26 15:11:58,347 process.py calibrate():227 [1] Calibration steps for 2009.274.03 INFO 2025-06-26 15:11:58,552 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:11:58,554 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:11:59,190 calibrate.py _nudge_pos():1806 [1] 93: 0.160 0.0001379 -0.0001427 1275 4.25 4.814 -6.227 2009-10-01T16:58:58.834804480 INFO 2025-06-26 15:11:59,846 calibrate.py _nudge_pos():1806 [1] 162: 0.180 0.0005200 0.0000444 10490 34.96 2.205 0.235 2009-10-01T17:35:04.826423808 INFO 2025-06-26 15:11:59,875 calibrate.py _nudge_pos():1806 [1] 165: 0.170 -0.0000044 -0.0000034 70 0.23 -2.846 -2.762 2009-10-01T17:35:20.835327232 INFO 2025-06-26 15:12:00,418 calibrate.py _nudge_pos():1806 [1] 221: 0.180 0.0005340 -0.0000506 10205 34.01 2.327 -0.276 2009-10-01T18:10:16.831741696 INFO 2025-06-26 15:12:01,065 calibrate.py _nudge_pos():1806 [1] 288: 0.180 0.0003253 -0.0000804 7050 23.50 2.051 -0.634 2009-10-01T18:34:52.830628608 INFO 2025-06-26 15:12:01,570 calibrate.py _nudge_pos():1806 [1] 341: 0.190 -0.0003714 -0.0012395 11440 38.13 -1.443 -6.024 2009-10-01T19:13:52.830327808 INFO 2025-06-26 15:12:02,089 calibrate.py _nudge_pos():1806 [1] 394: 0.200 -0.0004196 -0.0012065 11440 38.13 -1.630 -5.863 2009-10-01T19:52:52.830026752 INFO 2025-06-26 15:12:02,803 calibrate.py _nudge_pos():1806 [1] 465: 0.200 -0.0001307 -0.0006835 7510 25.03 -0.774 -5.060 2009-10-01T20:19:04.832337408 INFO 2025-06-26 15:12:03,495 calibrate.py _nudge_pos():1806 [1] 537: 0.200 0.0026675 0.0015059 12514 41.71 9.476 6.690 2009-10-01T21:01:58.836005888 INFO 2025-06-26 15:12:04,206 calibrate.py _nudge_pos():1806 [1] 607: 0.010 0.0026026 0.0014335 12345 41.15 9.375 6.455 2009-10-01T21:44:17.032127744 INFO 2025-06-26 15:12:04,857 calibrate.py _nudge_pos():1806 [1] 673: 0.010 0.0018345 0.0008703 9665 32.21 8.442 5.006 2009-10-01T22:17:35.035255040 INFO 2025-06-26 15:12:05,558 calibrate.py _nudge_pos():1806 [1] 745: 0.020 0.0006105 0.0000997 2285 7.61 11.887 2.425 2009-10-01T22:26:23.029084928 INFO 2025-06-26 15:12:06,014 calibrate.py _nudge_pos():1806 [1] 791: 0.020 -0.0000208 -0.0000006 25 0.08 -38.564 -1.478 2009-10-01T22:27:13.035659264 INFO 2025-06-26 15:12:06,242 calibrate.py _nudge_pos():1806 [1] 813: 0.030 0.0033786 0.0015664 12845 42.81 11.703 6.780 2009-10-01T23:10:23.028232448 INFO 2025-06-26 15:12:07,081 calibrate.py _nudge_pos():1862 [1] 865: - - - 3 0.01 - - INFO 2025-06-26 15:12:07,081 calibrate.py _nudge_pos():1868 [1] Points in final series = 113234 WARNING 2025-06-26 15:12:07,233 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:12:07,387 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 34 of 90795 INFO 2025-06-26 15:12:08,081 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:12:08,941 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:12:09,620 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:12:09,623 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2009.274.03/ctd1.nc INFO 2025-06-26 15:12:09,624 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-26 15:12:09,624 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:12:09,624 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:12:10,426 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:12:11,107 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:12:11,110 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2009.274.03/ctd2.nc INFO 2025-06-26 15:12:11,111 calibrate.py _range_qc_combined_nc():898 [1] Setting 347 ctd2_salinity values to NaN INFO 2025-06-26 15:12:11,111 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:12:11,111 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 15:12:11,920 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 15:12:12,981 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 63 64 65 66 84120 84121 84122 84123 172140 172141 172142 186720 186721 186722 421980 543420 543421 543422 806220 992100 992101 992102 1092780 1193460 1339320 1339321 1339322] INFO 2025-06-26 15:12:13,198 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 15:12:13,203 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 15:12:13,213 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2009.274.03 INFO 2025-06-26 15:12:13,302 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2009.274.03/dorado_2009.274.03_cal.nc INFO 2025-06-26 15:12:13,411 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:12:13,417 process.py align():251 [1] Alignment steps for 2009.274.03 INFO 2025-06-26 15:12:13,449 align.py process_cal():139 [1] Processing dorado_2009.274.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2009.274.03 INFO 2025-06-26 15:12:13,481 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:12:13,485 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:12:13,560 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:12:13,565 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:12:13,640 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:12:13,646 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:12:13,691 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:12:13,692 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:12:13,721 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:12:13,726 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:12:13,800 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:13,805 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:13,870 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:13,874 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:13,941 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:13,946 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:14,011 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:14,016 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:14,085 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:14,090 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:14,154 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:14,159 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:14,233 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:14,238 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:14,302 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:14,307 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:14,374 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:14,379 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:14,443 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:14,449 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:14,515 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:14,520 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:14,586 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:14,591 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:14,658 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:14,663 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:14,726 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:14,731 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:14,800 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:14,806 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:14,874 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:14,879 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:14,947 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:14,952 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:15,019 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:15,024 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:15,097 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:15,102 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:15,168 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:15,173 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:15,241 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:15,246 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:15,314 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.274.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:12:15,319 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:12:15,399 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 15:12:15,452 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 15:12:15,506 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 15:12:15,565 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 15:12:15,621 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:12:15,668 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:12:15,715 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:12:15,762 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:12:15,808 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:12:15,857 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:12:15,914 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2009.274.03/dorado_2009.274.03_align.nc INFO 2025-06-26 15:12:16,009 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:12:16,011 process.py resample():273 [1] Resampling steps for 2009.274.03 INFO 2025-06-26 15:12:16,012 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:12:16,041 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.274.03/dorado_2009.274.03_align.nc mission netCDF file INFO 2025-06-26 15:12:16,047 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.274.03/dorado_2009.274.03_align.nc mission netCDF file INFO 2025-06-26 15:12:16,049 resample.py get_mission_start_end():1145 [1] navigation: 2009-10-01T16:53:45.296283136 to 2009-10-01T23:11:47.632436736 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 15:12:16,051 resample.py get_mission_start_end():1145 [1] hs2 : 2009-10-01T16:53:18.038150656 to 2009-10-01T23:11:47.742429184 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:12:16,053 resample.py get_mission_start_end():1145 [1] ctd1 : 2009-10-01T16:53:39.946649856 to 2009-10-01T23:11:47.742429184 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:12:16,056 resample.py get_mission_start_end():1145 [1] ctd2 : 2009-10-01T16:53:39.896653056 to 2009-10-01T23:11:47.642436352 (0 days 00:00:00.099992832 before mission_end) INFO 2025-06-26 15:12:16,058 resample.py get_mission_start_end():1145 [1] isus : 2009-10-01T16:54:13.434355712 to 2009-10-01T23:11:44.672639488 (0 days 00:00:03.069789696 before mission_end) INFO 2025-06-26 15:12:16,059 resample.py get_mission_start_end():1145 [1] biolume : 2009-10-01T16:53:12.008529408 to 2009-10-01T23:11:46.502480128 (0 days 00:00:01.239949056 before mission_end) INFO 2025-06-26 15:12:16,061 resample.py get_mission_start_end():1145 [1] lopc : 2009-10-01T16:56:13.268511488 to 2009-10-01T17:18:05.768511488 (0 days 05:53:41.973917696 before mission_end) WARNING 2025-06-26 15:12:16,062 resample.py get_mission_start_end():1156 [1] Instrument lopc has a gap > 5 minutes at the end of the mission: 0 days 05:53:41.973917696 INFO 2025-06-26 15:12:16,064 resample.py get_mission_start_end():1145 [1] tailcone : 2009-10-01T16:53:13.578456064 to 2009-10-01T23:11:47.572440832 (0 days 00:00:00.169988352 before mission_end) INFO 2025-06-26 15:12:16,065 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.274.03/dorado_2009.274.03_align.nc mission netCDF file INFO 2025-06-26 15:12:16,065 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,332 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,375 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,416 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,458 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,494 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,531 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,567 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,601 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,634 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,667 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,699 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,732 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,766 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,800 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,832 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,865 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,898 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,933 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:16,969 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:17,007 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:17,041 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:17,076 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:17,111 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:17,146 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:17,162 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:17,177 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:17,191 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:17,207 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:17,219 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:17,219 resample.py resample_variable():1038 [1] Padding lopc_countListSum with 0 days 05:53:41.973917696 of NaNs to the end of mission INFO 2025-06-26 15:12:17,229 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:17,229 resample.py resample_variable():1038 [1] Padding lopc_transCount with 0 days 05:53:41.973917696 of NaNs to the end of mission INFO 2025-06-26 15:12:17,238 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:17,239 resample.py resample_variable():1038 [1] Padding lopc_nonTransCount with 0 days 05:53:41.973917696 of NaNs to the end of mission INFO 2025-06-26 15:12:17,248 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:17,248 resample.py resample_variable():1038 [1] Padding lopc_LCcount with 0 days 05:53:41.973917696 of NaNs to the end of mission INFO 2025-06-26 15:12:17,258 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:17,258 resample.py resample_variable():1038 [1] Padding lopc_flowSpeed with 0 days 05:53:41.973917696 of NaNs to the end of mission INFO 2025-06-26 15:12:17,297 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:12:17,537 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2009.274.03/dorado_2009.274.03_1S.nc INFO 2025-06-26 15:12:19,431 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 15:12:22,889 create_products.py gulper_odv():522 [1] Wrote 3 Gulper data lines to /data/auv_data/dorado/missionodvs/2009.274.03/dorado_2009.274.03_1S_Gulper.txt INFO 2025-06-26 15:12:22,889 process.py archive():337 [1] Archiving steps for 2009.274.03 INFO 2025-06-26 15:12:22,890 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2009.274.03/dorado_2009.274.03, BASE_PATH = /data/auv_data INFO 2025-06-26 15:12:22,890 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2009.274.03/dorado_2009.274.03 files to /Volumes/AUVCTD/surveys/2009/netcdf INFO 2025-06-26 15:12:22,891 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.274.03_1S.nc INFO 2025-06-26 15:12:22,915 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.274.03/dorado_2009.274.03_1S.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:12:22,916 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.274.03_cal.nc INFO 2025-06-26 15:12:23,010 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.274.03/dorado_2009.274.03_cal.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:12:23,011 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.274.03_align.nc INFO 2025-06-26 15:12:23,103 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.274.03/dorado_2009.274.03_align.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:12:23,130 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.274.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009274/2009.274.03 done. INFO 2025-06-26 15:12:23,156 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.274.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009274/2009.274.03 done. INFO 2025-06-26 15:12:23,161 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.274.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009274/2009.274.03 done. INFO 2025-06-26 15:12:23,184 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.274.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009274/2009.274.03 done. INFO 2025-06-26 15:12:23,259 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.274.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009274/2009.274.03 done. INFO 2025-06-26 15:12:23,267 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.274.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009274/2009.274.03 done. INFO 2025-06-26 15:12:23,292 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.274.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009274/2009.274.03 done. INFO 2025-06-26 15:12:23,313 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.274.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009274/2009.274.03 done. INFO 2025-06-26 15:12:23,374 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.274.03/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009274/2009.274.03 done. INFO 2025-06-26 15:12:23,384 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.274.03/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009274/2009.274.03 done. INFO 2025-06-26 15:12:23,384 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:12:23,385 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2009/odv/dorado_2009.274.03_1S_Gulper.txt INFO 2025-06-26 15:12:23,390 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2009.274.03/dorado_2009.274.03_1S_Gulper.txt /Volumes/AUVCTD/surveys/2009/odv done. INFO 2025-06-26 15:12:23,390 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.274.03/dorado_2009.274.03_processing.log /Volumes/AUVCTD/surveys/2009/netcdf