INFO 2025-06-26 15:04:24,717 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:04:24,717 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Yanwu's detection - bottle tripping algorithm - ctdToUse = ctd2 INFO 2025-06-26 15:04:24,717 process.py process_mission():449 [1] Processing AUVCTD mission 2009.272.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:04:24,717 process.py download_process():165 [1] Download and processing steps for 2009.272.00 INFO 2025-06-26 15:04:24,718 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2009/2009272/2009.272.00 INFO 2025-06-26 15:04:24,718 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2009/2009272/2009.272.00 to /data/auv_data/dorado/missionlogs/2009.272.00 INFO 2025-06-26 15:04:31,009 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2009.272.00 INFO 2025-06-26 15:04:31,010 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.272.00/ctdDriver.log (20728518 bytes) INFO 2025-06-26 15:04:32,560 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.272.00/ctdDriver2.log (20735135 bytes) INFO 2025-06-26 15:04:34,088 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.272.00/gps.log (2618420 bytes) INFO 2025-06-26 15:04:34,370 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.272.00/hydroscatlog.log (18141922 bytes) INFO 2025-06-26 15:04:36,243 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.272.00/navigation.log (63708798 bytes) INFO 2025-06-26 15:04:40,835 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.272.00/isuslog.log (1257909 bytes) INFO 2025-06-26 15:04:40,963 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.272.00/parosci.log (22121510 bytes) INFO 2025-06-26 15:04:42,882 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.272.00/tailCone.log (3033787 bytes) INFO 2025-06-26 15:04:43,267 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.272.00/biolume.log (14698204 bytes) INFO 2025-06-26 15:04:44,753 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 15:04:45,519 logs2netcdfs.py download_process_logs():807 [1] Time to process: 14.51 seconds INFO 2025-06-26 15:04:45,519 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2009.272.00/lopc.bin (49980863 bytes) INFO 2025-06-26 15:04:45,520 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:04:45 2025 INFO 2025-06-26 15:04:45,520 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2009.272.00/parosci.nc INFO 2025-06-26 15:04:45,520 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:04:45,520 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2009.272.00/parosci.nc INFO 2025-06-26 15:04:45,523 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1254252481.5, sensor_off_time = 1254306502.0 INFO 2025-06-26 15:04:45,523 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 54020 seconds. Expecting to read 108040 L frames from the lopc.bin file. INFO 2025-06-26 15:04:45,523 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 108040 records from the lopc.bin file. INFO 2025-06-26 15:04:46,176 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2009-09-29 19:28:01 Z and endTime = 2009-09-30 10:28:21 Z with 108040 records expected to be read from lopc.bin INFO 2025-06-26 15:04:46,176 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2009.272.00/lopc.bin INFO 2025-06-26 15:04:46,176 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2009.272.00/lopc.nc INFO 2025-06-26 15:04:46,177 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2009.272.00/lopc.nc INFO 2025-06-26 15:04:46,177 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2009.272.00 INFO 2025-06-26 15:04:46,178 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 15:04:46,254 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 15:04:46,254 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 15:04:46,254 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 15:04:49,008 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 15:04:49,010 process.py calibrate():227 [1] Calibration steps for 2009.272.00 INFO 2025-06-26 15:04:49,488 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:04:49,490 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:04:49,888 calibrate.py _nudge_pos():1806 [1] 63: 0.050 -0.0001956 -0.0000452 70 0.23 -126.111 -36.382 2009-09-29T19:29:16.940993024 INFO 2025-06-26 15:04:49,919 calibrate.py _nudge_pos():1806 [1] 66: 0.050 -0.0001983 -0.0001080 1250 4.16 -7.065 -4.809 2009-09-29T19:33:28.943729664 INFO 2025-06-26 15:04:50,636 calibrate.py _nudge_pos():1806 [1] 137: 0.070 0.0006280 -0.0000465 11320 37.73 2.468 -0.229 2009-09-29T20:12:22.943839488 INFO 2025-06-26 15:04:51,109 calibrate.py _nudge_pos():1806 [1] 184: 0.070 -0.0000356 -0.0001094 50 0.16 -32.315 -124.117 2009-09-29T20:13:18.940003584 INFO 2025-06-26 15:04:51,160 calibrate.py _nudge_pos():1806 [1] 189: 0.070 -0.0000025 -0.0000126 15 0.05 -7.945 -49.946 2009-09-29T20:13:25.939524096 INFO 2025-06-26 15:04:51,270 calibrate.py _nudge_pos():1806 [1] 200: 0.070 0.0000258 -0.0000068 30 0.10 39.603 -13.116 2009-09-29T20:13:41.938428160 INFO 2025-06-26 15:04:51,300 calibrate.py _nudge_pos():1806 [1] 203: 0.080 0.0004434 -0.0001014 11025 36.75 1.788 -0.511 2009-09-29T20:50:28.937238528 INFO 2025-06-26 15:04:51,805 calibrate.py _nudge_pos():1806 [1] 253: 0.070 0.0000044 0.0000069 15 0.05 13.841 27.468 2009-09-29T20:51:20.943675648 INFO 2025-06-26 15:04:51,956 calibrate.py _nudge_pos():1806 [1] 268: 0.080 0.0002425 -0.0000469 4780 15.93 2.255 -0.546 2009-09-29T21:07:30.937226496 INFO 2025-06-26 15:04:52,599 calibrate.py _nudge_pos():1806 [1] 332: 0.080 -0.0004613 -0.0013184 12365 41.21 -1.659 -5.928 2009-09-29T21:49:46.943498496 INFO 2025-06-26 15:04:53,118 calibrate.py _nudge_pos():1806 [1] 383: 0.080 0.0000214 -0.0000582 30 0.10 32.757 -111.603 2009-09-29T21:50:42.939662336 INFO 2025-06-26 15:04:53,313 calibrate.py _nudge_pos():1806 [1] 402: 0.090 -0.0004825 -0.0012175 12380 41.26 -1.732 -5.467 2009-09-29T22:32:16.938811648 INFO 2025-06-26 15:04:53,986 calibrate.py _nudge_pos():1806 [1] 467: 0.090 -0.0002074 -0.0003585 5290 17.63 -1.742 -3.768 2009-09-29T22:50:58.941949184 INFO 2025-06-26 15:04:54,467 calibrate.py _nudge_pos():1806 [1] 514: 0.100 0.0000182 -0.0000372 25 0.08 33.650 -86.136 2009-09-29T22:51:49.938455552 INFO 2025-06-26 15:04:54,592 calibrate.py _nudge_pos():1806 [1] 526: 0.100 0.0028846 0.0016316 13010 43.36 9.857 6.972 2009-09-29T23:35:22.939452928 INFO 2025-06-26 15:04:55,033 calibrate.py _nudge_pos():1806 [1] 568: 0.110 -0.0000248 -0.0000968 85 0.28 -13.138 -64.058 2009-09-29T23:36:20.935479808 INFO 2025-06-26 15:04:55,136 calibrate.py _nudge_pos():1806 [1] 578: 0.110 0.0029547 0.0016000 12955 43.18 10.143 6.866 2009-09-30T00:19:40.937367552 INFO 2025-06-26 15:04:55,191 calibrate.py _nudge_pos():1806 [1] 583: 0.110 -0.0000096 -0.0000300 15 0.05 -30.572 -119.197 2009-09-30T00:19:47.936888064 INFO 2025-06-26 15:04:55,753 calibrate.py _nudge_pos():1806 [1] 637: 0.110 0.0005443 0.0002450 2640 8.80 9.171 5.162 2009-09-30T00:29:28.937086720 INFO 2025-06-26 15:05:10,203 calibrate.py _nudge_pos():1806 [1] 2035: 0.120 0.0000079 0.0000015 40 0.13 9.057 2.132 2009-09-30T00:52:53.940837376 INFO 2025-06-26 15:05:13,357 calibrate.py _nudge_pos():1806 [1] 2342: 0.120 -0.0000167 -0.0000229 20 0.06 -39.097 -67.082 2009-09-30T00:58:03.939600896 INFO 2025-06-26 15:05:13,841 calibrate.py _nudge_pos():1806 [1] 2389: 0.120 0.0000204 -0.0000128 15 0.05 64.912 -50.810 2009-09-30T00:58:52.936244480 INFO 2025-06-26 15:05:19,619 calibrate.py _nudge_pos():1806 [1] 2954: 0.120 0.0000135 -0.0000199 85 0.28 7.150 -13.167 2009-09-30T01:08:35.936306176 INFO 2025-06-26 15:05:27,090 calibrate.py _nudge_pos():1806 [1] 3680: 0.120 -0.0000317 0.0000565 20 0.06 -74.217 165.195 2009-09-30T01:20:44.936366336 INFO 2025-06-26 15:05:32,608 calibrate.py _nudge_pos():1806 [1] 4215: 0.120 0.0000076 -0.0000013 15 0.05 24.102 -5.255 2009-09-30T01:29:41.939579136 INFO 2025-06-26 15:05:33,737 calibrate.py _nudge_pos():1806 [1] 4325: 0.120 0.0000157 -0.0000344 15 0.05 49.997 -136.477 2009-09-30T01:31:33.941906432 INFO 2025-06-26 15:05:41,144 calibrate.py _nudge_pos():1806 [1] 5040: 0.120 0.0000291 -0.0000228 25 0.08 54.010 -52.786 2009-09-30T01:43:32.942651392 INFO 2025-06-26 15:05:51,283 calibrate.py _nudge_pos():1806 [1] 6009: 0.130 -0.0000115 -0.0000007 20 0.06 -26.807 -2.090 2009-09-30T01:59:44.936065536 INFO 2025-06-26 15:06:00,756 calibrate.py _nudge_pos():1806 [1] 6915: 0.130 -0.0000363 0.0000035 45 0.15 -36.680 4.403 2009-09-30T02:14:59.943383296 INFO 2025-06-26 15:06:06,816 calibrate.py _nudge_pos():1806 [1] 7492: 0.120 0.0000165 -0.0000077 15 0.05 52.284 -30.446 2009-09-30T02:24:38.943718912 INFO 2025-06-26 15:06:15,257 calibrate.py _nudge_pos():1806 [1] 8302: 0.140 -0.0000102 0.0000139 35 0.11 -13.305 22.762 2009-09-30T02:38:14.937819392 INFO 2025-06-26 15:06:31,302 calibrate.py _nudge_pos():1806 [1] 9836: 0.140 0.0000224 -0.0000066 15 0.05 71.148 -26.144 2009-09-30T03:03:51.942527232 INFO 2025-06-26 15:06:39,486 calibrate.py _nudge_pos():1806 [1] 10622: 0.150 -0.0000059 0.0000100 15 0.05 -18.738 39.905 2009-09-30T03:16:59.938545920 INFO 2025-06-26 15:06:52,205 calibrate.py _nudge_pos():1806 [1] 11843: 0.150 -0.0000011 -0.0000000 25 0.08 -1.959 -0.083 2009-09-30T03:37:24.934628096 INFO 2025-06-26 15:07:09,836 calibrate.py _nudge_pos():1806 [1] 13512: 0.150 0.0000496 -0.0000057 35 0.11 64.917 -9.376 2009-09-30T04:05:20.939813888 INFO 2025-06-26 15:07:43,407 calibrate.py _nudge_pos():1806 [1] 16657: 0.170 -0.0000649 0.0000166 15 0.05 -206.404 65.883 2009-09-30T04:57:47.934229760 INFO 2025-06-26 15:07:47,525 calibrate.py _nudge_pos():1806 [1] 17043: 0.170 0.0000058 -0.0000127 15 0.05 18.313 -50.512 2009-09-30T05:04:15.937649664 INFO 2025-06-26 15:07:54,599 calibrate.py _nudge_pos():1806 [1] 17703: 0.160 -0.0000070 0.0000049 15 0.05 -22.130 19.557 2009-09-30T05:15:17.942299392 INFO 2025-06-26 15:07:56,293 calibrate.py _nudge_pos():1806 [1] 17858: 0.160 0.0000054 -0.0000086 70 0.23 3.472 -6.914 2009-09-30T05:18:05.940790528 INFO 2025-06-26 15:08:06,484 calibrate.py _nudge_pos():1806 [1] 18814: 0.180 0.0000126 0.0000144 45 0.15 12.786 18.174 2009-09-30T05:34:09.934752768 INFO 2025-06-26 15:08:06,723 calibrate.py _nudge_pos():1806 [1] 18837: 0.160 0.0000158 0.0000128 40 0.13 18.016 18.231 2009-09-30T05:34:39.942696704 INFO 2025-06-26 15:08:07,712 calibrate.py _nudge_pos():1806 [1] 18930: 0.170 -0.0000397 -0.0000165 60 0.20 -29.935 -15.554 2009-09-30T05:36:23.935572736 INFO 2025-06-26 15:08:33,173 calibrate.py _nudge_pos():1806 [1] 21309: 0.170 -0.0000057 -0.0000195 15 0.05 -18.063 -77.537 2009-09-30T06:16:04.942462720 INFO 2025-06-26 15:08:36,245 calibrate.py _nudge_pos():1806 [1] 21596: 0.170 0.0000025 0.0000005 15 0.05 8.043 2.100 2009-09-30T06:20:54.942596352 INFO 2025-06-26 15:08:41,821 calibrate.py _nudge_pos():1806 [1] 22113: 0.180 0.0000112 -0.0000002 90 0.30 5.589 -0.118 2009-09-30T06:29:48.936015360 INFO 2025-06-26 15:09:07,632 calibrate.py _nudge_pos():1806 [1] 24502: 0.180 0.0000369 -0.0000117 70 0.23 23.797 -9.431 2009-09-30T07:09:52.941329664 INFO 2025-06-26 15:09:09,013 calibrate.py _nudge_pos():1806 [1] 24626: 0.180 0.0000107 -0.0000165 15 0.05 34.063 -65.705 2009-09-30T07:11:58.942697984 INFO 2025-06-26 15:09:21,902 calibrate.py _nudge_pos():1806 [1] 25811: 0.190 -0.0000386 0.0000685 30 0.10 -59.185 131.327 2009-09-30T07:31:49.941108992 INFO 2025-06-26 15:09:37,132 calibrate.py _nudge_pos():1806 [1] 27222: 0.200 0.0000084 -0.0000088 14 0.04 28.748 -37.613 2009-09-30T07:55:23.934243840 INFO 2025-06-26 15:09:37,810 calibrate.py _nudge_pos():1806 [1] 27285: 0.190 -0.0000136 0.0000254 20 0.06 -31.817 74.286 2009-09-30T07:56:29.939722240 INFO 2025-06-26 15:09:37,981 calibrate.py _nudge_pos():1806 [1] 27301: 0.190 -0.0000102 0.0000093 29 0.09 -16.158 18.548 2009-09-30T07:56:50.938283776 INFO 2025-06-26 15:09:48,724 calibrate.py _nudge_pos():1806 [1] 28300: 0.200 -0.0000280 -0.0000061 40 0.13 -31.910 -8.730 2009-09-30T08:13:36.939367936 INFO 2025-06-26 15:09:48,956 calibrate.py _nudge_pos():1806 [1] 28322: 0.200 -0.0000070 0.0000025 14 0.04 -23.914 10.894 2009-09-30T08:14:00.937723904 INFO 2025-06-26 15:09:49,866 calibrate.py _nudge_pos():1806 [1] 28408: 0.190 -0.0000455 0.0001121 30 0.10 -69.849 214.812 2009-09-30T08:15:31.941489664 INFO 2025-06-26 15:10:01,127 calibrate.py _nudge_pos():1806 [1] 29463: 0.200 -0.0000116 -0.0000064 19 0.06 -28.650 -19.819 2009-09-30T08:33:09.939011840 INFO 2025-06-26 15:10:18,008 calibrate.py _nudge_pos():1806 [1] 31026: 0.200 -0.0000318 0.0000298 19 0.06 -78.514 91.980 2009-09-30T08:59:16.941665024 INFO 2025-06-26 15:10:33,951 calibrate.py _nudge_pos():1806 [1] 32513: 0.200 -0.0000051 0.0000155 14 0.04 -17.293 66.184 2009-09-30T09:24:05.939661568 INFO 2025-06-26 15:10:43,578 calibrate.py _nudge_pos():1806 [1] 33397: 0.200 -0.0000046 -0.0000004 24 0.08 -8.910 -0.910 2009-09-30T09:38:53.938829312 INFO 2025-06-26 15:10:44,097 calibrate.py _nudge_pos():1806 [1] 33441: 0.010 -0.0000236 0.0000179 15 0.05 -75.038 71.036 2009-09-30T09:39:40.135664640 INFO 2025-06-26 15:10:52,927 calibrate.py _nudge_pos():1806 [1] 34257: 0.010 0.0000406 -0.0000056 40 0.13 46.326 -7.968 2009-09-30T09:53:24.139216640 INFO 2025-06-26 15:11:15,498 calibrate.py _nudge_pos():1862 [1] 36323: - - - 4 0.01 - - INFO 2025-06-26 15:11:15,498 calibrate.py _nudge_pos():1868 [1] Points in final series = 266163 INFO 2025-06-26 15:11:15,836 calibrate.py _depth_process():2162 [1] Removing depths outside of valid_depth_range=Range(min=-1, max=40) for self.args.mission=2009.272.00 INFO 2025-06-26 15:11:15,843 calibrate.py _depth_process():2175 [1] Setting 375 depths values to NaN WARNING 2025-06-26 15:11:15,850 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:11:16,298 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 5 of 215963 INFO 2025-06-26 15:11:17,918 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:11:19,931 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 43 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:11:21,533 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 43 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:11:21,537 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2009.272.00/ctd1.nc INFO 2025-06-26 15:11:21,538 calibrate.py _range_qc_combined_nc():898 [1] Setting 3 ctd1_salinity values to NaN INFO 2025-06-26 15:11:21,539 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:11:21,539 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:11:23,409 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:11:25,022 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:11:25,026 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2009.272.00/ctd2.nc INFO 2025-06-26 15:11:25,027 calibrate.py _range_qc_combined_nc():898 [1] Setting 14 ctd2_salinity values to NaN INFO 2025-06-26 15:11:25,028 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:11:25,028 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 15:11:25,105 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 15:11:27,561 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 63 64 65 66 6300 6301 6302 8040 8041 75720 75721 75722 368160 473940 473941 473942 506760 578400 578401 578402 580080 580081 811020 908580 908581 908582 908583 908584 908585 908586 908587 908588 908589 908590 908591 908592 908593 908594 908595 908596 908597 908598 908599 908600 908601 908602 908603 908604 908605 908606 908607 908608 908609 975180 1473600 2095260 2095261 2095262 2095263 2270160 2272500 2395740 2395741 2395742 2609040 2609041 2822760 2822761] INFO 2025-06-26 15:11:28,050 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 15:11:28,058 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 15:11:28,058 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2009.272.00 ERROR 2025-06-26 15:11:28,059 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2009.272.00 INFO 2025-06-26 15:11:28,172 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2009.272.00/dorado_2009.272.00_cal.nc INFO 2025-06-26 15:11:28,344 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:11:28,353 process.py align():251 [1] Alignment steps for 2009.272.00 INFO 2025-06-26 15:11:28,392 align.py process_cal():139 [1] Processing dorado_2009.272.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2009.272.00 INFO 2025-06-26 15:11:28,462 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:11:28,469 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:11:28,642 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:11:28,653 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:11:28,833 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:11:28,846 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:11:28,960 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:11:28,960 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:11:29,028 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:11:29,038 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:11:29,198 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:29,207 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:29,355 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:29,363 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:29,508 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:29,517 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:29,660 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:29,668 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:29,814 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:29,822 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:29,967 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:29,976 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:30,122 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:30,131 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:30,274 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:30,283 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:30,427 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:30,435 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:30,579 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:30,589 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:30,735 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:30,743 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:30,886 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:30,895 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:31,044 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:31,053 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:31,206 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:31,214 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:31,361 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:31,370 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:31,514 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:31,523 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:31,668 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:31,678 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:31,820 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:31,829 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:31,973 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:31,982 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:32,128 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:32,137 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:32,290 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:32,299 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:32,443 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.272.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:11:32,451 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:11:32,627 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 15:11:32,735 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 15:11:32,846 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 15:11:32,963 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 15:11:33,084 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.17 INFO 2025-06-26 15:11:33,120 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2009.272.00/dorado_2009.272.00_align.nc INFO 2025-06-26 15:11:33,251 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:11:33,254 process.py resample():273 [1] Resampling steps for 2009.272.00 INFO 2025-06-26 15:11:33,254 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:11:33,286 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.272.00/dorado_2009.272.00_align.nc mission netCDF file INFO 2025-06-26 15:11:33,294 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.272.00/dorado_2009.272.00_align.nc mission netCDF file INFO 2025-06-26 15:11:33,296 resample.py get_mission_start_end():1145 [1] navigation: 2009-09-29T19:28:33.393976320 to 2009-09-30T10:28:21.935507712 (0 days 00:00:00.049996800 before mission_end) INFO 2025-06-26 15:11:33,298 resample.py get_mission_start_end():1145 [1] hs2 : 2009-09-29T19:28:06.845794816 to 2009-09-30T10:28:21.985504512 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:11:33,301 resample.py get_mission_start_end():1145 [1] ctd1 : 2009-09-29T19:28:44.483216640 to 2009-09-30T10:28:21.905509632 (0 days 00:00:00.079994880 before mission_end) INFO 2025-06-26 15:11:33,303 resample.py get_mission_start_end():1145 [1] ctd2 : 2009-09-29T19:28:27.284394752 to 2009-09-30T10:28:21.885511168 (0 days 00:00:00.099993344 before mission_end) INFO 2025-06-26 15:11:33,305 resample.py get_mission_start_end():1145 [1] isus : 2009-09-29T19:29:17.810933248 to 2009-09-30T10:28:21.135562496 (0 days 00:00:00.849942016 before mission_end) INFO 2025-06-26 15:11:33,307 resample.py get_mission_start_end():1145 [1] biolume : 2009-09-29T19:28:00.716180480 to 2009-09-30T10:28:20.965539840 (0 days 00:00:01.019964672 before mission_end) INFO 2025-06-26 15:11:33,308 resample.py get_mission_start_end():1145 [1] tailcone : 2009-09-29T19:28:05.435891456 to 2009-09-30T10:28:21.545534464 (0 days 00:00:00.439970048 before mission_end) INFO 2025-06-26 15:11:33,309 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.272.00/dorado_2009.272.00_align.nc mission netCDF file INFO 2025-06-26 15:11:33,309 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:33,883 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:33,973 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:34,062 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:34,150 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:34,225 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:34,299 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:34,373 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:34,447 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:34,515 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:34,583 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:34,651 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:34,718 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:34,788 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:34,855 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:34,923 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:34,991 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:35,061 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:35,132 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:35,206 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:35,283 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:35,356 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:35,427 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:35,498 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:35,573 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:35,602 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:35,626 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:35,648 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:35,675 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:35,704 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:11:36,106 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2009.272.00/dorado_2009.272.00_1S.nc INFO 2025-06-26 15:11:39,268 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd2 INFO 2025-06-26 15:11:43,838 create_products.py gulper_odv():522 [1] Wrote 4 Gulper data lines to /data/auv_data/dorado/missionodvs/2009.272.00/dorado_2009.272.00_1S_Gulper.txt INFO 2025-06-26 15:11:43,838 process.py archive():337 [1] Archiving steps for 2009.272.00 INFO 2025-06-26 15:11:43,838 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2009.272.00/dorado_2009.272.00, BASE_PATH = /data/auv_data INFO 2025-06-26 15:11:43,840 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2009.272.00/dorado_2009.272.00 files to /Volumes/AUVCTD/surveys/2009/netcdf INFO 2025-06-26 15:11:43,841 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.272.00_1S.nc INFO 2025-06-26 15:11:43,880 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.272.00/dorado_2009.272.00_1S.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:11:43,881 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.272.00_cal.nc INFO 2025-06-26 15:11:44,078 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.272.00/dorado_2009.272.00_cal.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:11:44,079 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.272.00_align.nc INFO 2025-06-26 15:11:44,254 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.272.00/dorado_2009.272.00_align.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 15:11:44,315 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.272.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009272/2009.272.00 done. INFO 2025-06-26 15:11:44,373 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.272.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009272/2009.272.00 done. INFO 2025-06-26 15:11:44,385 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.272.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009272/2009.272.00 done. INFO 2025-06-26 15:11:44,431 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.272.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009272/2009.272.00 done. INFO 2025-06-26 15:11:44,582 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.272.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009272/2009.272.00 done. INFO 2025-06-26 15:11:44,591 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.272.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009272/2009.272.00 done. INFO 2025-06-26 15:11:44,646 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.272.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009272/2009.272.00 done. INFO 2025-06-26 15:11:44,661 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.272.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009272/2009.272.00 done. INFO 2025-06-26 15:11:44,793 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.272.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009272/2009.272.00 done. INFO 2025-06-26 15:11:44,806 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.272.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009272/2009.272.00 done. INFO 2025-06-26 15:11:44,806 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:11:44,807 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2009/odv/dorado_2009.272.00_1S_Gulper.txt INFO 2025-06-26 15:11:44,812 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2009.272.00/dorado_2009.272.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2009/odv done. INFO 2025-06-26 15:11:44,812 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.272.00/dorado_2009.272.00_processing.log /Volumes/AUVCTD/surveys/2009/netcdf