INFO 2025-06-26 14:55:00,519 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 14:55:00,519 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Ryan - around ESP - ctdToUse = ctd2 INFO 2025-06-26 14:55:00,519 process.py process_mission():449 [1] Processing AUVCTD mission 2009.153.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 14:55:00,519 process.py download_process():165 [1] Download and processing steps for 2009.153.01 INFO 2025-06-26 14:55:00,519 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2009/2009153/2009.153.01 INFO 2025-06-26 14:55:00,519 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2009/2009153/2009.153.01 to /data/auv_data/dorado/missionlogs/2009.153.01 INFO 2025-06-26 14:55:07,587 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2009.153.01 INFO 2025-06-26 14:55:07,588 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.153.01/ctdDriver.log (23484428 bytes) INFO 2025-06-26 14:55:09,340 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.153.01/ctdDriver.log: [ 15108 27201 35901 41956 48668 49520 68806 75283 79058 88944 97053 102369 115795 117659 120039 121197 125493 135274 144351 148455 150523 157271 164771 167112 189635 195596 195700 199422 209477 212815 216485 222820 224473 229752 231969 246221 262066] INFO 2025-06-26 14:55:09,408 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.153.01/ctdDriver2.log (23492957 bytes) INFO 2025-06-26 14:55:11,058 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.153.01/ctdDriver2.log: [ 22890 45386 52882 58158 77470 90209 95095 98322 112874 141033 141864 148211 149996 151559 156167 162880 164868 172085 186821 189823 194749 195797 209536 209574 216582 218574 224570 232066 232658 242409 245129 247065 261722 262163] INFO 2025-06-26 14:55:11,136 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.153.01/gps.log (290732 bytes) INFO 2025-06-26 14:55:11,179 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.153.01/hydroscatlog.log (22420882 bytes) INFO 2025-06-26 14:55:13,440 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.153.01/hydroscatlog.log: [ 47154 58214 69187 82847 83260 95130 97911 98357 112901 115494 129334 144458 148219 156473 161523 167206 170903 172081 182000 196918 217045 219675 223263 236684 241636 247021 253381 262113] INFO 2025-06-26 14:55:13,517 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.153.01/navigation.log (78727838 bytes) INFO 2025-06-26 14:55:19,183 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.153.01/isuslog.log (1548597 bytes) INFO 2025-06-26 14:55:19,330 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.153.01/isuslog.log: [1 2 3 4 5 6 7 8] INFO 2025-06-26 14:55:19,335 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.153.01/parosci.log (27338726 bytes) INFO 2025-06-26 14:55:21,660 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.153.01/tailCone.log (3259051 bytes) INFO 2025-06-26 14:55:22,075 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.153.01/biolume.log (18164844 bytes) INFO 2025-06-26 14:55:23,813 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 14:55:24,761 logs2netcdfs.py download_process_logs():807 [1] Time to process: 17.17 seconds INFO 2025-06-26 14:55:24,761 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2009.153.01/lopc.bin (112897038 bytes) INFO 2025-06-26 14:55:24,761 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 14:55:24 2025 INFO 2025-06-26 14:55:24,761 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2009.153.01/parosci.nc INFO 2025-06-26 14:55:24,762 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 14:55:24,762 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2009.153.01/parosci.nc INFO 2025-06-26 14:55:24,765 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1243979799.8, sensor_off_time = 1244046564.2 INFO 2025-06-26 14:55:24,765 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 66764 seconds. Expecting to read 133528 L frames from the lopc.bin file. INFO 2025-06-26 14:55:24,765 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 133528 records from the lopc.bin file. INFO 2025-06-26 14:55:25,562 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2009-06-02 21:56:39 Z and endTime = 2009-06-03 16:29:24 Z with 133528 records expected to be read from lopc.bin INFO 2025-06-26 14:55:25,562 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2009.153.01/lopc.bin INFO 2025-06-26 14:55:25,562 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2009.153.01/lopc.nc INFO 2025-06-26 14:55:25,562 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2009.153.01/lopc.nc INFO 2025-06-26 14:55:25,563 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2009.153.01 INFO 2025-06-26 14:55:25,563 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 14:55:25,598 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 14:55:25,598 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 14:55:25,598 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-26 14:55:35,064 lopcToNetCDF.py unpackLOPCbin():1013 [1] 10000 10093 24756 0 0 0 0 93 9.5 seconds, last L Frame: 133528 ERROR 2025-06-26 14:55:37,486 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 14:55:37,489 process.py calibrate():227 [1] Calibration steps for 2009.153.01 INFO 2025-06-26 14:55:38,091 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 14:55:38,093 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 14:55:39,036 calibrate.py _nudge_pos():1806 [1] 120: 0.120 -0.0000292 -0.0003964 3885 12.95 -0.334 -5.674 2009-06-02T22:11:35.034505472 INFO 2025-06-26 14:55:40,036 calibrate.py _nudge_pos():1806 [1] 216: 0.120 0.0000405 -0.0010100 8735 29.11 0.206 -6.428 2009-06-02T22:42:17.038319616 INFO 2025-06-26 14:55:40,695 calibrate.py _nudge_pos():1806 [1] 282: 0.120 0.0000814 -0.0000320 2885 9.61 1.256 -0.617 2009-06-02T22:52:59.034339840 INFO 2025-06-26 14:55:41,435 calibrate.py _nudge_pos():1806 [1] 356: 0.120 0.0000010 -0.0000182 15 0.05 3.032 -72.271 2009-06-02T22:54:15.039133184 INFO 2025-06-26 14:55:41,487 calibrate.py _nudge_pos():1806 [1] 361: 0.120 0.0000197 -0.0007838 7009 23.36 0.125 -6.216 2009-06-02T23:17:41.042815232 INFO 2025-06-26 14:55:42,256 calibrate.py _nudge_pos():1806 [1] 431: 0.130 0.0000369 -0.0000562 2835 9.45 0.580 -1.103 2009-06-02T23:28:17.039246592 INFO 2025-06-26 14:55:43,148 calibrate.py _nudge_pos():1806 [1] 514: 0.130 0.0001120 -0.0010506 8433 28.11 0.591 -6.925 2009-06-02T23:57:47.037993472 INFO 2025-06-26 14:55:43,918 calibrate.py _nudge_pos():1806 [1] 589: 0.140 0.0000541 -0.0000274 2810 9.36 0.857 -0.543 2009-06-03T00:08:23.034424576 INFO 2025-06-26 14:55:43,931 calibrate.py _nudge_pos():1806 [1] 590: 0.120 0.0000129 0.0000252 99 0.33 5.790 14.143 2009-06-03T00:08:43.043053824 INFO 2025-06-26 14:55:44,613 calibrate.py _nudge_pos():1806 [1] 658: 0.140 -0.0000411 -0.0007097 6914 23.05 -0.265 -5.706 2009-06-03T00:32:53.033722624 INFO 2025-06-26 14:55:45,454 calibrate.py _nudge_pos():1806 [1] 742: 0.140 0.0001309 -0.0000011 2495 8.31 2.336 -0.024 2009-06-03T00:42:35.033852928 INFO 2025-06-26 14:55:46,228 calibrate.py _nudge_pos():1806 [1] 818: 0.140 0.0000629 -0.0009896 8354 27.85 0.335 -6.585 2009-06-03T01:11:41.034243840 INFO 2025-06-26 14:55:46,896 calibrate.py _nudge_pos():1806 [1] 884: 0.140 0.0018154 0.0016231 10673 35.58 7.568 8.453 2009-06-03T01:48:21.043532800 INFO 2025-06-26 14:55:47,709 calibrate.py _nudge_pos():1806 [1] 965: 0.140 0.0002317 -0.0010916 8408 28.03 1.226 -7.216 2009-06-03T02:17:43.042827520 INFO 2025-06-26 14:55:48,337 calibrate.py _nudge_pos():1806 [1] 1027: 0.150 0.0000994 -0.0000534 3102 10.35 1.424 -0.957 2009-06-03T02:29:05.036107776 INFO 2025-06-26 14:55:49,010 calibrate.py _nudge_pos():1806 [1] 1093: 0.150 -0.0001453 -0.0009240 7774 25.91 -0.831 -6.607 2009-06-03T02:56:05.035130368 INFO 2025-06-26 14:55:49,720 calibrate.py _nudge_pos():1806 [1] 1163: 0.150 0.0001450 0.0000127 2925 9.75 2.206 0.241 2009-06-03T03:06:59.040327680 INFO 2025-06-26 14:55:49,731 calibrate.py _nudge_pos():1806 [1] 1164: 0.150 0.0000127 -0.0000014 125 0.41 4.573 -0.608 2009-06-03T03:07:24.038615552 INFO 2025-06-26 14:55:50,359 calibrate.py _nudge_pos():1806 [1] 1225: 0.160 0.0001681 -0.0009563 7731 25.78 0.967 -6.874 2009-06-03T03:34:11.038528512 INFO 2025-06-26 14:55:51,142 calibrate.py _nudge_pos():1806 [1] 1302: 0.160 0.0001325 -0.0000526 2500 8.33 2.359 -1.170 2009-06-03T03:43:47.039069696 INFO 2025-06-26 14:55:51,909 calibrate.py _nudge_pos():1806 [1] 1372: 0.160 -0.0000899 -0.0007143 8444 28.15 -0.473 -4.702 2009-06-03T04:13:05.038638336 INFO 2025-06-26 14:55:52,563 calibrate.py _nudge_pos():1806 [1] 1436: 0.160 0.0000095 0.0000161 25 0.08 17.633 37.228 2009-06-03T04:14:13.033980416 INFO 2025-06-26 14:55:52,584 calibrate.py _nudge_pos():1806 [1] 1438: 0.160 0.0001270 -0.0000232 2594 8.65 2.177 -0.496 2009-06-03T04:22:53.038357760 INFO 2025-06-26 14:55:52,626 calibrate.py _nudge_pos():1806 [1] 1442: 0.160 0.0000041 0.0000017 75 0.25 2.437 1.305 2009-06-03T04:23:11.037124608 INFO 2025-06-26 14:55:53,312 calibrate.py _nudge_pos():1806 [1] 1508: 0.170 0.0000997 -0.0009808 7623 25.41 0.582 -7.151 2009-06-03T04:49:41.038202112 INFO 2025-06-26 14:55:54,181 calibrate.py _nudge_pos():1806 [1] 1592: 0.160 0.0016844 0.0015673 11643 38.81 6.437 7.482 2009-06-03T05:29:53.042968576 INFO 2025-06-26 14:55:54,994 calibrate.py _nudge_pos():1806 [1] 1669: 0.170 0.0002054 -0.0011837 7748 25.83 1.180 -8.491 2009-06-03T05:56:59.041580032 INFO 2025-06-26 14:55:55,726 calibrate.py _nudge_pos():1806 [1] 1738: 0.170 0.0001150 -0.0000786 2540 8.46 2.015 -1.721 2009-06-03T06:06:35.042121216 INFO 2025-06-26 14:55:56,509 calibrate.py _nudge_pos():1806 [1] 1813: 0.180 -0.0000894 -0.0005357 8388 27.96 -0.474 -3.550 2009-06-03T06:35:47.042100992 INFO 2025-06-26 14:55:57,286 calibrate.py _nudge_pos():1806 [1] 1888: 0.180 0.0001721 -0.0000157 2360 7.86 3.246 -0.370 2009-06-03T06:44:53.034697984 INFO 2025-06-26 14:55:58,004 calibrate.py _nudge_pos():1806 [1] 1958: 0.190 0.0002094 -0.0011137 7664 25.55 1.216 -8.078 2009-06-03T07:11:35.034953472 INFO 2025-06-26 14:55:58,807 calibrate.py _nudge_pos():1806 [1] 2035: 0.190 0.0000913 -0.0000478 2438 8.13 1.665 -1.089 2009-06-03T07:20:59.036316672 INFO 2025-06-26 14:55:59,438 calibrate.py _nudge_pos():1806 [1] 2096: 0.180 -0.0001146 -0.0004814 8427 28.10 -0.605 -3.175 2009-06-03T07:50:05.036707328 INFO 2025-06-26 14:56:00,150 calibrate.py _nudge_pos():1806 [1] 2163: 0.190 0.0000932 -0.0000017 2399 8.00 1.728 -0.039 2009-06-03T07:59:11.039303680 INFO 2025-06-26 14:56:00,875 calibrate.py _nudge_pos():1806 [1] 2232: 0.190 0.0001785 -0.0010647 7759 25.86 1.023 -7.628 2009-06-03T08:26:11.038326272 INFO 2025-06-26 14:56:01,609 calibrate.py _nudge_pos():1806 [1] 2301: 0.200 0.0021133 0.0019951 11355 37.86 8.279 9.765 2009-06-03T09:05:11.038025216 INFO 2025-06-26 14:56:02,343 calibrate.py _nudge_pos():1806 [1] 2369: 0.200 0.0003786 -0.0014085 9741 32.48 1.729 -8.036 2009-06-03T09:38:47.039919616 INFO 2025-06-26 14:56:03,032 calibrate.py _nudge_pos():1806 [1] 2435: 0.010 0.0000025 -0.0000560 2315 7.71 0.047 -1.345 2009-06-03T09:47:35.233735680 INFO 2025-06-26 14:56:03,066 calibrate.py _nudge_pos():1806 [1] 2438: 0.200 0.0000042 0.0000077 74 0.24 2.573 5.853 2009-06-03T09:47:52.042584320 INFO 2025-06-26 14:56:03,747 calibrate.py _nudge_pos():1806 [1] 2503: 0.200 -0.0000693 -0.0004207 7122 23.74 -0.433 -3.283 2009-06-03T10:12:41.040580864 INFO 2025-06-26 14:56:03,789 calibrate.py _nudge_pos():1806 [1] 2507: 0.200 -0.0000213 0.0000208 104 0.34 -9.197 11.238 2009-06-03T10:13:05.038937088 INFO 2025-06-26 14:56:04,453 calibrate.py _nudge_pos():1806 [1] 2570: 0.010 0.0001160 -0.0000035 2390 7.96 2.161 -0.082 2009-06-03T10:22:05.241930496 INFO 2025-06-26 14:56:05,181 calibrate.py _nudge_pos():1806 [1] 2639: 0.010 0.0001741 -0.0010419 8478 28.26 0.914 -6.831 2009-06-03T10:51:29.241088512 INFO 2025-06-26 14:56:05,899 calibrate.py _nudge_pos():1806 [1] 2707: 0.200 0.0000547 -0.0000620 2423 8.08 1.005 -1.422 2009-06-03T11:00:41.043287296 INFO 2025-06-26 14:56:06,630 calibrate.py _nudge_pos():1806 [1] 2775: 0.010 0.0001459 -0.0003865 7164 23.88 0.906 -2.999 2009-06-03T11:25:41.240516608 INFO 2025-06-26 14:56:07,377 calibrate.py _nudge_pos():1806 [1] 2845: 0.010 0.0000944 -0.0000135 2443 8.15 1.718 -0.308 2009-06-03T11:34:59.242290944 INFO 2025-06-26 14:56:08,102 calibrate.py _nudge_pos():1806 [1] 2912: 0.010 0.0001489 -0.0010426 8338 27.80 0.795 -6.951 2009-06-03T12:03:53.243503872 INFO 2025-06-26 14:56:08,811 calibrate.py _nudge_pos():1806 [1] 2977: 0.020 0.0018888 0.0017622 10388 34.63 8.090 9.429 2009-06-03T12:39:35.236767232 INFO 2025-06-26 14:56:09,525 calibrate.py _nudge_pos():1806 [1] 3042: 0.030 0.0002549 -0.0012505 9189 30.63 1.234 -7.565 2009-06-03T13:11:17.236471296 INFO 2025-06-26 14:56:10,239 calibrate.py _nudge_pos():1806 [1] 3107: 0.020 0.0000842 -0.0000475 2860 9.53 1.310 -0.923 2009-06-03T13:21:53.242901760 INFO 2025-06-26 14:56:10,263 calibrate.py _nudge_pos():1806 [1] 3109: 0.030 0.0000006 0.0000014 140 0.46 0.193 0.542 2009-06-03T13:22:22.240915200 INFO 2025-06-26 14:56:10,970 calibrate.py _nudge_pos():1806 [1] 3173: 0.030 -0.0000208 -0.0007103 7667 25.56 -0.121 -5.149 2009-06-03T13:48:59.241513216 INFO 2025-06-26 14:56:11,689 calibrate.py _nudge_pos():1806 [1] 3238: 0.040 0.0001499 0.0000045 3160 10.53 2.112 0.079 2009-06-03T14:00:35.233834496 INFO 2025-06-26 14:56:12,420 calibrate.py _nudge_pos():1806 [1] 3303: 0.030 0.0000862 -0.0005279 4386 14.63 0.874 -6.687 2009-06-03T14:16:17.239302912 INFO 2025-06-26 14:56:12,454 calibrate.py _nudge_pos():1806 [1] 3306: 0.030 0.0000086 0.0000086 125 0.41 3.092 3.857 2009-06-03T14:16:44.237453312 INFO 2025-06-26 14:56:13,129 calibrate.py _nudge_pos():1806 [1] 3367: 0.040 0.0000062 -0.0004521 4215 14.05 0.065 -5.964 2009-06-03T14:31:47.235593728 INFO 2025-06-26 14:56:13,853 calibrate.py _nudge_pos():1806 [1] 3432: 0.030 0.0000496 -0.0000684 2319 7.73 0.952 -1.640 2009-06-03T14:40:35.239422976 INFO 2025-06-26 14:56:13,864 calibrate.py _nudge_pos():1806 [1] 3433: 0.040 0.0000025 0.0000064 120 0.40 0.947 2.986 2009-06-03T14:40:59.237778944 INFO 2025-06-26 14:56:14,578 calibrate.py _nudge_pos():1806 [1] 3498: 0.030 -0.0000853 -0.0008353 8048 26.83 -0.472 -5.769 2009-06-03T15:08:53.243101952 INFO 2025-06-26 14:56:15,291 calibrate.py _nudge_pos():1806 [1] 3563: 0.040 0.0001754 0.0000060 3040 10.13 2.567 0.109 2009-06-03T15:20:05.237067008 INFO 2025-06-26 14:56:16,017 calibrate.py _nudge_pos():1806 [1] 3628: 0.040 0.0001027 -0.0009590 7599 25.33 0.602 -7.016 2009-06-03T15:46:29.238555392 INFO 2025-06-26 14:56:16,030 calibrate.py _nudge_pos():1806 [1] 3629: 0.050 0.0000067 -0.0000001 130 0.43 2.310 -0.037 2009-06-03T15:46:55.236774400 INFO 2025-06-26 14:56:16,766 calibrate.py _nudge_pos():1806 [1] 3695: 0.050 0.0014071 0.0012942 10762 35.88 5.817 6.684 2009-06-03T16:23:53.234831104 INFO 2025-06-26 14:56:20,458 calibrate.py _nudge_pos():1862 [1] 3993: - - - 5 0.01 - - INFO 2025-06-26 14:56:20,459 calibrate.py _nudge_pos():1868 [1] Points in final series = 333353 WARNING 2025-06-26 14:56:20,899 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 14:56:54,251 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 2 of 266875 INFO 2025-06-26 14:56:56,267 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:57:15,254 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 50 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 14:57:17,236 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 50 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 14:57:17,240 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2009.153.01/ctd1.nc INFO 2025-06-26 14:57:17,241 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 14:57:17,242 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:57:17,242 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 14:57:31,921 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 14:57:33,919 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 14:57:33,923 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2009.153.01/ctd2.nc INFO 2025-06-26 14:57:33,924 calibrate.py _range_qc_combined_nc():898 [1] Setting 145 ctd2_salinity values to NaN INFO 2025-06-26 14:57:33,925 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:57:33,925 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 14:57:36,236 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 14:57:39,346 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 63 64 65 66 67 68 69 70 71 24000 28560 28561 28562 28563 38280 38281 38282 38283 38284 42120 42121 42122 42123 42124 62220 62340 62520 62760 63000 63360 75900 75901 75902 80280 80281 80282 80283 80284 80285 85680 85681 85682 85683 91920 91921 105240 105241 105242 105243 105244 105245 152340 152341 152342 152343 152344 176700 176820 177060 177180 179580 188880 188881 188882 220680 268260 268261 268262 268263 268264 268265 301800 301801 325620 325621 325622 325623 325624 325625 325626 345060 345061 345062 345063 345064 345065 345066 353220 407100 409200 411180 411181 411182 411183 411184 422760 422761 422762 422763 422764 422765 422766 474660 474661 474662 474663 474664 474665 474666 474667 474668 474669 474670 474671 475380 475381 475382 497700 497701 497702 497703 497704 497705 497706 497707 541680 541681 541682 541683 541684 541685 541686 541687 541688 541689 541690 541691 541692 541693 541694 552720 552721 552722 552723 632520 632521 632522 632523 632524 635280 635281 635282 635283 635284 635285 635286 635287 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3803413 3803414 3803415 3803416 3902100 3902101 3902102 3902103 3902104 3902105 3902106 3902107 3902108 3927840 3927841 3927842 3927843 3927844 3927845 3934440 3934441 3934442 3934443 3934444 3934445 3934446 3934447 3934448 3934449 3934450 3934451 3934452 3934453 3934454 3934455 3934456 3934457 3934458 3934459 3967500 3967501 3967502 3967503 3967504 3967505 3967506 3967507 3967508 3967509 3967510 3967511] INFO 2025-06-26 14:57:40,064 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 14:57:40,073 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 14:57:40,074 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2009.153.01 ERROR 2025-06-26 14:57:40,074 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2009.153.01 INFO 2025-06-26 14:57:40,146 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2009.153.01/dorado_2009.153.01_cal.nc INFO 2025-06-26 14:58:00,771 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 14:58:00,779 process.py align():251 [1] Alignment steps for 2009.153.01 INFO 2025-06-26 14:58:00,820 align.py process_cal():139 [1] Processing dorado_2009.153.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2009.153.01 INFO 2025-06-26 14:58:00,908 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:58:00,917 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:58:01,129 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:58:01,142 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:58:01,346 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:58:01,358 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:58:01,485 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 14:58:01,485 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 14:58:01,566 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:58:01,577 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:58:01,778 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:01,789 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:01,965 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:01,975 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:02,188 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:02,198 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:02,373 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:02,383 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:02,563 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:02,573 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:02,751 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:02,760 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:02,935 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:02,945 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:03,121 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:03,131 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:03,313 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:03,323 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:03,497 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:03,507 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:03,685 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:03,696 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:03,879 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:03,889 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:04,069 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:04,078 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:04,255 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:04,265 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:04,442 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:04,452 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:04,627 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:04,637 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:04,820 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:04,830 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:05,014 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:05,027 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:05,208 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:05,221 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:05,410 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.153.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:58:05,418 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:58:05,633 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:58:05,763 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:58:05,897 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:58:06,034 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 14:58:06,175 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.02 INFO 2025-06-26 14:58:06,214 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2009.153.01/dorado_2009.153.01_align.nc INFO 2025-06-26 14:58:06,370 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 14:58:06,373 process.py resample():273 [1] Resampling steps for 2009.153.01 INFO 2025-06-26 14:58:06,373 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 14:58:06,415 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.153.01/dorado_2009.153.01_align.nc mission netCDF file INFO 2025-06-26 14:58:06,429 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.153.01/dorado_2009.153.01_align.nc mission netCDF file INFO 2025-06-26 14:58:06,432 resample.py get_mission_start_end():1145 [1] navigation: 2009-06-02T21:57:12.743576576 to 2009-06-03T16:29:24.242155520 (0 days 00:00:00 before mission_end) INFO 2025-06-26 14:58:06,437 resample.py get_mission_start_end():1145 [1] hs2 : 2009-06-02T21:56:45.315455488 to 2009-06-03T16:29:24.052168704 (0 days 00:00:00.189986816 before mission_end) INFO 2025-06-26 14:58:06,440 resample.py get_mission_start_end():1145 [1] ctd1 : 2009-06-02T21:57:30.572355072 to 2009-06-03T16:29:24.192159232 (0 days 00:00:00.049996288 before mission_end) INFO 2025-06-26 14:58:06,444 resample.py get_mission_start_end():1145 [1] ctd2 : 2009-06-02T21:57:06.464006656 to 2009-06-03T16:29:24.232156160 (0 days 00:00:00.009999360 before mission_end) INFO 2025-06-26 14:58:06,446 resample.py get_mission_start_end():1145 [1] isus : 2009-06-02T21:57:40.191696128 to 2009-06-03T16:29:23.182228224 (0 days 00:00:01.059927296 before mission_end) INFO 2025-06-26 14:58:06,448 resample.py get_mission_start_end():1145 [1] biolume : 2009-06-02T21:56:39.035851264 to 2009-06-03T16:29:22.822218752 (0 days 00:00:01.419936768 before mission_end) INFO 2025-06-26 14:58:06,449 resample.py get_mission_start_end():1145 [1] tailcone : 2009-06-02T21:56:43.735563520 to 2009-06-03T16:29:23.842183168 (0 days 00:00:00.399972352 before mission_end) INFO 2025-06-26 14:58:06,450 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.153.01/dorado_2009.153.01_align.nc mission netCDF file INFO 2025-06-26 14:58:06,451 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:07,159 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:07,273 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:07,388 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:07,503 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:07,598 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:07,688 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:07,778 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:07,866 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:07,953 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:08,037 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:08,136 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:08,236 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:08,317 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:08,403 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:08,491 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:08,575 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:08,660 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:08,748 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:08,841 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:08,929 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:09,015 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:09,103 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:09,139 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:09,165 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:09,190 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:09,221 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:09,253 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 14:58:09,720 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2009.153.01/dorado_2009.153.01_1S.nc INFO 2025-06-26 14:58:12,359 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd2 INFO 2025-06-26 14:58:22,900 create_products.py gulper_odv():522 [1] Wrote 10 Gulper data lines to /data/auv_data/dorado/missionodvs/2009.153.01/dorado_2009.153.01_1S_Gulper.txt INFO 2025-06-26 14:58:22,901 process.py archive():337 [1] Archiving steps for 2009.153.01 INFO 2025-06-26 14:58:22,901 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2009.153.01/dorado_2009.153.01, BASE_PATH = /data/auv_data INFO 2025-06-26 14:58:22,902 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2009.153.01/dorado_2009.153.01 files to /Volumes/AUVCTD/surveys/2009/netcdf INFO 2025-06-26 14:58:22,903 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.153.01_1S.nc INFO 2025-06-26 14:58:22,946 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.153.01/dorado_2009.153.01_1S.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 14:58:22,947 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.153.01_cal.nc INFO 2025-06-26 14:58:23,182 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.153.01/dorado_2009.153.01_cal.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 14:58:23,183 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.153.01_align.nc INFO 2025-06-26 14:58:23,386 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.153.01/dorado_2009.153.01_align.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 14:58:23,450 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.153.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009153/2009.153.01 done. INFO 2025-06-26 14:58:23,516 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.153.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009153/2009.153.01 done. INFO 2025-06-26 14:58:23,522 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.153.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009153/2009.153.01 done. INFO 2025-06-26 14:58:23,588 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.153.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009153/2009.153.01 done. INFO 2025-06-26 14:58:23,806 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.153.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009153/2009.153.01 done. INFO 2025-06-26 14:58:23,816 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.153.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009153/2009.153.01 done. INFO 2025-06-26 14:58:23,894 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.153.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009153/2009.153.01 done. INFO 2025-06-26 14:58:23,911 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.153.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009153/2009.153.01 done. INFO 2025-06-26 14:58:24,105 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.153.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009153/2009.153.01 done. INFO 2025-06-26 14:58:24,129 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.153.01/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009153/2009.153.01 done. INFO 2025-06-26 14:58:24,129 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 14:58:24,131 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2009/odv/dorado_2009.153.01_1S_Gulper.txt INFO 2025-06-26 14:58:24,136 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2009.153.01/dorado_2009.153.01_1S_Gulper.txt /Volumes/AUVCTD/surveys/2009/odv done. INFO 2025-06-26 14:58:24,136 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.153.01/dorado_2009.153.01_processing.log /Volumes/AUVCTD/surveys/2009/netcdf