INFO 2025-06-26 14:51:55,981 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 14:51:55,981 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Ryan - around ESP - ctdToUse = ctd2 INFO 2025-06-26 14:51:55,981 process.py process_mission():449 [1] Processing AUVCTD mission 2009.152.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 14:51:55,981 process.py download_process():165 [1] Download and processing steps for 2009.152.00 INFO 2025-06-26 14:51:55,981 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2009/2009152/2009.152.00 INFO 2025-06-26 14:51:55,982 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2009/2009152/2009.152.00 to /data/auv_data/dorado/missionlogs/2009.152.00 INFO 2025-06-26 14:52:03,813 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2009.152.00 INFO 2025-06-26 14:52:03,813 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.152.00/ctdDriver.log (24478652 bytes) INFO 2025-06-26 14:52:05,621 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.152.00/ctdDriver.log: [152234 160611 169127 201448 204832 208508 208713 224380 227869 243347 246461 253173 257020 269617] INFO 2025-06-26 14:52:05,697 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.152.00/ctdDriver2.log (24487005 bytes) INFO 2025-06-26 14:52:07,510 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.152.00/ctdDriver2.log: [176717 181835 201973 210404 215763 216518 231855 251315 262214 266692 273405] INFO 2025-06-26 14:52:07,596 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.152.00/gps.log (175964 bytes) INFO 2025-06-26 14:52:07,624 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.152.00/hydroscatlog.log (23370082 bytes) INFO 2025-06-26 14:52:09,996 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.152.00/hydroscatlog.log: [151780 201958 215744 217209 226394 266775 269675] INFO 2025-06-26 14:52:10,079 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.152.00/navigation.log (82070542 bytes) INFO 2025-06-26 14:52:16,078 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.152.00/isuslog.log (1618069 bytes) INFO 2025-06-26 14:52:16,237 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.152.00/parosci.log (28488806 bytes) INFO 2025-06-26 14:52:18,733 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.152.00/tailCone.log (3376363 bytes) INFO 2025-06-26 14:52:19,168 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.152.00/biolume.log (18933516 bytes) INFO 2025-06-26 14:52:21,056 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 14:52:22,048 logs2netcdfs.py download_process_logs():807 [1] Time to process: 18.24 seconds INFO 2025-06-26 14:52:22,049 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2009.152.00/lopc.bin (239078957 bytes) INFO 2025-06-26 14:52:22,049 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 14:52:22 2025 INFO 2025-06-26 14:52:22,049 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2009.152.00/parosci.nc INFO 2025-06-26 14:52:22,049 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 14:52:22,049 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2009.152.00/parosci.nc INFO 2025-06-26 14:52:22,053 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1243890492.6, sensor_off_time = 1243960081.6 INFO 2025-06-26 14:52:22,053 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 69588 seconds. Expecting to read 139176 L frames from the lopc.bin file. INFO 2025-06-26 14:52:22,053 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 139176 records from the lopc.bin file. INFO 2025-06-26 14:52:22,896 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2009-06-01 21:08:12 Z and endTime = 2009-06-02 16:28:01 Z with 139176 records expected to be read from lopc.bin INFO 2025-06-26 14:52:22,896 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2009.152.00/lopc.bin INFO 2025-06-26 14:52:22,896 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2009.152.00/lopc.nc INFO 2025-06-26 14:52:22,896 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2009.152.00/lopc.nc INFO 2025-06-26 14:52:22,897 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2009.152.00 INFO 2025-06-26 14:52:22,897 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 14:52:22,932 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 14:52:22,932 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 14:52:22,932 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 14:52:25,179 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 14:52:25,181 process.py calibrate():227 [1] Calibration steps for 2009.152.00 INFO 2025-06-26 14:52:25,787 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 14:52:25,789 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 14:52:26,697 calibrate.py _nudge_pos():1806 [1] 115: 0.080 0.0000372 -0.0002096 2785 9.28 0.595 -4.186 2009-06-01T21:19:22.926880000 INFO 2025-06-26 14:52:27,348 calibrate.py _nudge_pos():1806 [1] 180: 0.090 0.0000889 -0.0008557 9340 31.13 0.424 -5.094 2009-06-01T21:51:34.924529408 INFO 2025-06-26 14:52:28,033 calibrate.py _nudge_pos():1806 [1] 248: 0.090 0.0000452 -0.0000460 2695 8.98 0.746 -0.948 2009-06-01T22:01:40.923015680 INFO 2025-06-26 14:52:28,499 calibrate.py _nudge_pos():1806 [1] 294: 0.100 -0.0000127 -0.0009228 10635 35.45 -0.053 -4.824 2009-06-01T22:37:52.924223232 INFO 2025-06-26 14:52:29,250 calibrate.py _nudge_pos():1806 [1] 367: 0.090 0.0000001 -0.0001487 3000 10.00 0.001 -2.756 2009-06-01T22:49:04.928187904 INFO 2025-06-26 14:52:29,282 calibrate.py _nudge_pos():1806 [1] 370: 0.090 0.0000379 0.0000170 110 0.36 15.471 8.657 2009-06-01T22:49:28.926543616 INFO 2025-06-26 14:52:29,702 calibrate.py _nudge_pos():1806 [1] 410: 0.110 -0.0000596 -0.0009074 10365 34.55 -0.256 -4.867 2009-06-01T23:24:40.921862144 INFO 2025-06-26 14:52:29,793 calibrate.py _nudge_pos():1806 [1] 419: 0.100 0.0000301 0.0000216 20 0.06 70.591 63.181 2009-06-01T23:24:52.921040384 INFO 2025-06-26 14:52:29,975 calibrate.py _nudge_pos():1806 [1] 437: 0.110 0.0000327 -0.0000806 2795 9.31 0.521 -1.604 2009-06-01T23:34:28.921581568 INFO 2025-06-26 14:52:30,430 calibrate.py _nudge_pos():1806 [1] 481: 0.100 0.0000135 -0.0006260 7975 26.58 0.075 -4.364 2009-06-02T00:01:46.929370112 INFO 2025-06-26 14:52:30,777 calibrate.py _nudge_pos():1806 [1] 515: 0.100 0.0000430 0.0000021 2715 9.05 0.705 0.044 2009-06-02T00:11:22.929911552 INFO 2025-06-26 14:52:31,132 calibrate.py _nudge_pos():1806 [1] 550: 0.110 0.0001045 -0.0009242 8830 29.43 0.527 -5.819 2009-06-02T00:41:22.926603264 INFO 2025-06-26 14:52:31,749 calibrate.py _nudge_pos():1806 [1] 609: 0.120 0.0019467 0.0015485 11560 38.53 7.494 7.447 2009-06-02T01:20:52.924247296 INFO 2025-06-26 14:52:32,242 calibrate.py _nudge_pos():1806 [1] 656: 0.120 0.0001524 -0.0011016 8770 29.23 0.773 -6.984 2009-06-02T01:50:52.920939264 INFO 2025-06-26 14:52:32,940 calibrate.py _nudge_pos():1806 [1] 723: 0.120 0.0001266 -0.0000186 3060 10.20 1.841 -0.338 2009-06-02T02:02:10.924492544 INFO 2025-06-26 14:52:33,373 calibrate.py _nudge_pos():1806 [1] 765: 0.130 -0.0000286 -0.0009419 10715 35.71 -0.119 -4.887 2009-06-02T02:38:34.924878336 INFO 2025-06-26 14:52:33,924 calibrate.py _nudge_pos():1806 [1] 817: 0.130 -0.0000384 -0.0000098 30 0.10 -58.918 -18.876 2009-06-02T02:39:31.920974080 INFO 2025-06-26 14:52:34,019 calibrate.py _nudge_pos():1806 [1] 826: 0.130 -0.0000566 -0.0001036 3155 10.51 -0.799 -1.826 2009-06-02T02:50:10.927199232 INFO 2025-06-26 14:52:34,394 calibrate.py _nudge_pos():1806 [1] 862: 0.130 0.0001257 -0.0009369 8135 27.11 0.687 -6.403 2009-06-02T03:17:52.923344384 INFO 2025-06-26 14:52:34,934 calibrate.py _nudge_pos():1806 [1] 914: 0.140 0.0000945 -0.0000346 2745 9.15 1.533 -0.701 2009-06-02T03:27:52.922241792 INFO 2025-06-26 14:52:35,539 calibrate.py _nudge_pos():1806 [1] 972: 0.130 0.0000210 -0.0000448 25 0.08 38.983 -103.778 2009-06-02T03:28:54.927994112 INFO 2025-06-26 14:52:35,550 calibrate.py _nudge_pos():1806 [1] 973: 0.140 0.0000291 -0.0005775 8780 29.26 0.148 -3.657 2009-06-02T03:58:10.927699712 INFO 2025-06-26 14:52:35,843 calibrate.py _nudge_pos():1806 [1] 1001: 0.140 0.0001464 -0.0000269 2685 8.95 2.427 -0.558 2009-06-02T04:07:34.929063168 INFO 2025-06-26 14:52:36,214 calibrate.py _nudge_pos():1806 [1] 1036: 0.140 0.0000795 -0.0008907 8020 26.73 0.441 -6.174 2009-06-02T04:34:52.926852352 INFO 2025-06-26 14:52:36,633 calibrate.py _nudge_pos():1806 [1] 1075: 0.150 0.0020211 0.0018148 12348 41.16 7.283 8.170 2009-06-02T05:16:40.925042944 INFO 2025-06-26 14:52:37,032 calibrate.py _nudge_pos():1806 [1] 1112: 0.150 0.0002155 -0.0011512 9089 30.30 1.055 -7.041 2009-06-02T05:47:34.928035072 INFO 2025-06-26 14:52:37,579 calibrate.py _nudge_pos():1806 [1] 1163: 0.150 0.0000401 -0.0000580 2750 9.16 0.650 -1.172 2009-06-02T05:57:34.926932224 INFO 2025-06-26 14:52:37,953 calibrate.py _nudge_pos():1806 [1] 1198: 0.160 -0.0000038 -0.0004931 10719 35.73 -0.016 -2.557 2009-06-02T06:33:52.927728896 INFO 2025-06-26 14:52:38,643 calibrate.py _nudge_pos():1806 [1] 1262: 0.160 -0.0000256 -0.0001485 3104 10.35 -0.367 -2.660 2009-06-02T06:45:16.920872192 INFO 2025-06-26 14:52:39,273 calibrate.py _nudge_pos():1806 [1] 1319: 0.170 0.0001003 -0.0010013 8779 29.26 0.508 -6.340 2009-06-02T07:15:28.926741248 INFO 2025-06-26 14:52:39,650 calibrate.py _nudge_pos():1806 [1] 1353: 0.170 0.0000828 -0.0000617 2685 8.95 1.372 -1.277 2009-06-02T07:24:58.927693568 INFO 2025-06-26 14:52:40,167 calibrate.py _nudge_pos():1806 [1] 1399: 0.170 -0.0000041 -0.0003003 8324 27.75 -0.022 -2.005 2009-06-02T07:53:28.930550272 INFO 2025-06-26 14:52:40,601 calibrate.py _nudge_pos():1806 [1] 1437: 0.180 0.0000928 -0.0000072 2515 8.38 1.643 -0.160 2009-06-02T08:02:28.923558144 INFO 2025-06-26 14:52:41,022 calibrate.py _nudge_pos():1806 [1] 1475: 0.180 0.0001509 -0.0009436 8693 28.98 0.772 -6.033 2009-06-02T08:32:04.921894144 INFO 2025-06-26 14:52:41,446 calibrate.py _nudge_pos():1806 [1] 1513: 0.180 0.0022761 0.0020406 11663 38.88 8.683 9.726 2009-06-02T09:11:34.929537536 INFO 2025-06-26 14:52:41,901 calibrate.py _nudge_pos():1806 [1] 1550: 0.190 0.0003093 -0.0011129 10109 33.70 1.361 -6.120 2009-06-02T09:45:52.928554752 INFO 2025-06-26 14:52:42,492 calibrate.py _nudge_pos():1806 [1] 1602: 0.190 0.0000611 -0.0000428 2655 8.85 1.025 -0.897 2009-06-02T09:55:34.928685312 INFO 2025-06-26 14:52:42,927 calibrate.py _nudge_pos():1806 [1] 1641: 0.190 -0.0000850 -0.0007495 10698 35.66 -0.354 -3.894 2009-06-02T10:31:52.929481728 INFO 2025-06-26 14:52:43,744 calibrate.py _nudge_pos():1806 [1] 1712: 0.200 0.0000160 -0.0001139 3188 10.63 0.223 -1.987 2009-06-02T10:43:40.920981248 INFO 2025-06-26 14:52:44,384 calibrate.py _nudge_pos():1806 [1] 1766: 0.200 0.0000911 -0.0008594 10052 33.51 0.403 -4.752 2009-06-02T11:18:04.929586944 INFO 2025-06-26 14:52:44,810 calibrate.py _nudge_pos():1806 [1] 1805: 0.200 0.0000183 -0.0000594 2719 9.06 0.299 -1.214 2009-06-02T11:27:46.929716992 INFO 2025-06-26 14:52:45,246 calibrate.py _nudge_pos():1806 [1] 1845: 0.200 -0.0000502 -0.0005086 7902 26.34 -0.283 -3.578 2009-06-02T11:54:46.928739584 INFO 2025-06-26 14:52:45,629 calibrate.py _nudge_pos():1806 [1] 1880: 0.010 0.0001062 -0.0000277 2680 8.93 1.764 -0.574 2009-06-02T12:04:17.129678080 INFO 2025-06-26 14:52:46,043 calibrate.py _nudge_pos():1806 [1] 1918: 0.010 0.0001759 -0.0009028 8633 28.78 0.907 -5.813 2009-06-02T12:33:41.128835840 INFO 2025-06-26 14:52:46,473 calibrate.py _nudge_pos():1806 [1] 1957: 0.020 0.0017831 0.0016938 11117 37.06 7.136 8.468 2009-06-02T13:11:23.123878656 INFO 2025-06-26 14:52:46,897 calibrate.py _nudge_pos():1806 [1] 1992: 0.030 0.0001948 -0.0010107 8709 29.03 0.995 -6.451 2009-06-02T13:40:59.122214400 INFO 2025-06-26 14:52:47,547 calibrate.py _nudge_pos():1806 [1] 2051: 0.030 0.0001316 -0.0000537 3010 10.03 1.946 -0.993 2009-06-02T13:51:59.127001088 INFO 2025-06-26 14:52:47,965 calibrate.py _nudge_pos():1806 [1] 2089: 0.030 -0.0001448 -0.0008142 10703 35.68 -0.602 -4.229 2009-06-02T14:28:17.127797504 INFO 2025-06-26 14:52:48,793 calibrate.py _nudge_pos():1806 [1] 2164: 0.030 -0.0000384 -0.0000668 3229 10.76 -0.530 -1.151 2009-06-02T14:40:17.128474112 INFO 2025-06-26 14:52:49,412 calibrate.py _nudge_pos():1806 [1] 2220: 0.040 0.0000752 -0.0003716 4315 14.38 0.775 -4.788 2009-06-02T14:55:35.125587200 INFO 2025-06-26 14:52:49,834 calibrate.py _nudge_pos():1806 [1] 2258: 0.040 0.0000477 -0.0003687 4224 14.08 0.503 -4.852 2009-06-02T15:10:17.125166080 INFO 2025-06-26 14:52:50,274 calibrate.py _nudge_pos():1806 [1] 2297: 0.040 0.0001605 -0.0000579 2810 9.36 2.542 -1.146 2009-06-02T15:20:17.124063232 INFO 2025-06-26 14:52:50,672 calibrate.py _nudge_pos():1806 [1] 2332: 0.040 -0.0000753 -0.0004900 9069 30.23 -0.369 -3.003 2009-06-02T15:51:05.127466496 INFO 2025-06-26 14:52:51,113 calibrate.py _nudge_pos():1806 [1] 2371: 0.050 0.0001914 -0.0000403 2778 9.26 3.063 -0.807 2009-06-02T16:00:59.126774784 INFO 2025-06-26 14:52:51,627 calibrate.py _nudge_pos():1806 [1] 2417: 0.050 0.0001473 -0.0008328 7813 26.05 0.839 -5.924 2009-06-02T16:27:47.126619136 INFO 2025-06-26 14:52:51,797 calibrate.py _nudge_pos():1862 [1] 2399: - - - 2 0.00 - - INFO 2025-06-26 14:52:51,797 calibrate.py _nudge_pos():1868 [1] Points in final series = 347626 WARNING 2025-06-26 14:52:52,330 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 14:53:29,055 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 14:53:48,762 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 50 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:53:50,809 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 50 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:53:50,813 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2009.152.00/ctd1.nc INFO 2025-06-26 14:53:50,814 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 14:53:50,815 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:53:50,815 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 14:54:06,094 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 14:54:08,290 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 14:54:08,294 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2009.152.00/ctd2.nc INFO 2025-06-26 14:54:08,295 calibrate.py _range_qc_combined_nc():898 [1] Setting 152 ctd2_salinity values to NaN INFO 2025-06-26 14:54:08,296 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:54:08,296 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 14:54:08,392 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 14:54:11,578 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 120 279480 279481 295740 295741 295742 295743 299700 299701 299702 396420 396421 446700 446701 446702 471000 497100 542880 542881 542882 542883 542884 551880 636420 636421 636422 691380 698220 698221 698222 740220 740221 740222 740223 740224 740225 740226 822120 822121 822122 822123 822124 822125 822126 873480 873481 873482 873483 873484 873485 873486 880920 982320 982321 982322 982323 982324 982325 1066140 1066141 1066142 1066143 1066144 1066145 1116420 1146780 1146781 1146782 1146783 1146784 1146785 1146786 1219260 1219261 1219262 1219263 1219264 1219265 1240680 1240681 1240682 1319940 1319941 1319942 1319943 1319944 1445220 1445221 1445222 1445223 1445224 1445225 1445226 1445227 1445228 1461480 1461481 1461482 1461483 1461484 1461485 1549920 1549921 1549922 1549923 1549924 1549925 1611360 1611361 1611362 1611363 1611364 1611365 1611366 1611367 1611368 1611369 1617840 1617841 1617842 1617843 1617844 1617845 1628040 1628041 1628042 1628043 1958520 1958521 1958522 1958523 2024700 2024701 2024702 2024703 2024704 2024705 2024706 2024707 2024708 2024709 2024710 2034540 2034541 2034542 2034543 2034544 2034545 2034546 2034547 2034548 2034549 2034550 2034551 2034552 2077800 2077801 2077802 2077803 2077804 2077805 2077806 2125380 2125381 2125382 2125383 2125384 2125385 2125386 2125387 2125388 2161560 2161561 2161562 2178480 2211840 2211841 2211842 2211843 2211844 2211845 2211846 2211847 2211848 2216460 2251260 2251261 2251262 2278500 2278501 2278502 2355780 2355781 2355782 2355783 2355784 2355785 2355786 2355787 2355788 2355789 2366520 2366521 2366522 2366523 2366524 2366525 2366526 2366527 2376780 2376781 2376782 2376783 2376784 2376785 2376786 2376787 2376788 2376789 2402700 2402701 2402702 2402703 2402704 2402705 2402706 2402707 2402708 2402709 2402710 2402711 2439360 2439361 2439362 2439363 2439364 2439365 2439366 2439367 2439368 2510880 2510881 2510882 2519220 2562600 2562601 2562602 2562603 2562604 2562605 2562606 2562607 2562608 2562609 2598480 2598481 2598482 2598483 2598484 2598485 2598486 2598487 2598488 2598489 2598490 2598491 2615460 2615461 2615462 2615463 2615464 2615465 2615466 2615467 2667060 2729520 2729521 2826540 2826541 2826542 2830200 2830201 2830202 2830203 2830204 2830205 2830206 2830207 2830208 2830209 2830210 2830211 2830212 2830213 2830214 2918460 2918461 2918462 2918463 2918464 2918465 2918466 2918467 2918468 2918469 2918470 2918471 2990100 2990101 2990102 2990103 2990104 2990105 2990106 2990107 2998680 2998681 2998682 2998683 2998684 2998685 2998686 2998687 2998688 2998689 3067140 3067141 3067142 3067143 3067144 3067145 3067146 3067147 3067148 3067149 3067150 3067151 3067152 3131820 3131821 3131822 3131823 3131824 3131825 3131826 3131827 3131828 3131829 3132300 3132301 3132302 3132303 3132304 3132305 3132306 3132307 3132308 3148020 3148021 3148022 3148023 3148024 3148025 3148026 3360720 3360721 3360722 3360723 3360724 3360725 3360726 3360727 3360728 3360729 3360730 3360731 3398340 3398341 3398342 3421500 3421501 3421502 3421503 3421504 3421505 3421506 3421507 3421508 3421509 3479880 3479881 3479882 3479883 3558480 3558481 3558482 3558483 3558484 3558485 3558486 3653700 3681300 3681301 3681302 3681303 3681304 3688020 3688021 3688022 3688023 3688024 3688025 3688026 3688027 3688028 3775620 3775621 3775622 3775623 3775624 3775625 3775626 3822840 3822841 3822842 3822843 3822844 3822845 3878460 3878461 3878462 3878463 3878464 3878465 3878466 3878467 3878468 3878469 3878470 3878471 3878472 3878473 3878474 3878475 3878476 3894180 3894181 3894182 3894183 3894184 3894185 3925380 3925381 3925382 3925383 3925384 3925385 3925386 3925387 3925388 3925389 3925390 3925391 3925392 3925393 3954120 3954121 3954122 3954123 3954124 3954125 3954126 3954127 3954128 3954129 3954130 3954131 3954132 3954133 3954134 3954135 4002480 4002481 4002482 4002483 4002484 4002485 4045500 4045501 4045502 4045503 4045504 4045505 4045506 4045507 4045508 4047780 4047781 4047782 4047783 4047784 4047785] INFO 2025-06-26 14:54:12,230 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -2 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 14:54:12,237 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 14:54:12,238 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2009.152.00 ERROR 2025-06-26 14:54:12,238 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2009.152.00 INFO 2025-06-26 14:54:12,293 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2009.152.00/dorado_2009.152.00_cal.nc INFO 2025-06-26 14:54:33,839 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 14:54:33,851 process.py align():251 [1] Alignment steps for 2009.152.00 INFO 2025-06-26 14:54:33,893 align.py process_cal():139 [1] Processing dorado_2009.152.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2009.152.00 INFO 2025-06-26 14:54:33,984 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:54:33,994 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:54:34,215 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:54:34,227 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:54:34,442 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:54:34,454 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:54:34,585 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 14:54:34,585 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 14:54:34,670 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:54:34,682 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:54:34,890 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:34,901 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:35,086 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:35,096 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:35,281 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:35,291 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:35,474 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:35,484 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:35,670 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:35,681 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:35,867 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:35,877 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:36,065 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:36,075 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:36,259 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:36,269 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:36,453 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:36,463 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:36,647 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:36,728 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:36,916 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:36,926 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:37,112 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:37,123 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:37,307 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:37,316 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:37,498 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:37,508 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:37,694 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:37,706 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:37,894 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:37,904 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:38,095 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:38,105 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:38,289 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:38,299 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:38,487 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:38,498 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:38,685 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.152.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:54:38,695 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:54:38,916 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:54:39,053 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:54:39,193 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:54:39,336 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 14:54:39,484 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.01 INFO 2025-06-26 14:54:39,525 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2009.152.00/dorado_2009.152.00_align.nc INFO 2025-06-26 14:54:39,681 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 14:54:39,683 process.py resample():273 [1] Resampling steps for 2009.152.00 INFO 2025-06-26 14:54:39,684 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 14:54:39,725 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.152.00/dorado_2009.152.00_align.nc mission netCDF file INFO 2025-06-26 14:54:39,735 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.152.00/dorado_2009.152.00_align.nc mission netCDF file INFO 2025-06-26 14:54:39,737 resample.py get_mission_start_end():1145 [1] navigation: 2009-06-01T21:08:45.140571648 to 2009-06-02T16:28:01.525632768 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 14:54:39,740 resample.py get_mission_start_end():1145 [1] hs2 : 2009-06-01T21:08:17.922436096 to 2009-06-02T16:28:01.575629312 (0 days 00:00:00 before mission_end) INFO 2025-06-26 14:54:39,743 resample.py get_mission_start_end():1145 [1] ctd1 : 2009-06-01T21:09:03.419319296 to 2009-06-02T16:28:01.515633408 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 14:54:39,745 resample.py get_mission_start_end():1145 [1] ctd2 : 2009-06-01T21:08:39.070987264 to 2009-06-02T16:28:01.565629952 (0 days 00:00:00.009999360 before mission_end) INFO 2025-06-26 14:54:39,747 resample.py get_mission_start_end():1145 [1] isus : 2009-06-01T21:09:28.357611008 to 2009-06-02T16:28:01.345645312 (0 days 00:00:00.229984 before mission_end) INFO 2025-06-26 14:54:39,749 resample.py get_mission_start_end():1145 [1] biolume : 2009-06-01T21:08:10.722895104 to 2009-06-02T16:28:00.515667712 (0 days 00:00:01.059961600 before mission_end) INFO 2025-06-26 14:54:39,751 resample.py get_mission_start_end():1145 [1] tailcone : 2009-06-01T21:08:16.582528000 to 2009-06-02T16:28:01.405640960 (0 days 00:00:00.169988352 before mission_end) INFO 2025-06-26 14:54:39,752 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.152.00/dorado_2009.152.00_align.nc mission netCDF file INFO 2025-06-26 14:54:39,752 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:40,460 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:40,574 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:40,685 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:40,796 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:40,889 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:40,982 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:41,076 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:41,168 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:41,254 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:41,341 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:41,426 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:41,513 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:41,601 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:41,686 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:41,772 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:41,857 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:41,946 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:42,041 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:42,139 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:42,230 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:42,321 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:42,411 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:42,446 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:42,475 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:42,501 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:42,533 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:42,567 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 14:54:43,061 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2009.152.00/dorado_2009.152.00_1S.nc INFO 2025-06-26 14:54:46,309 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd2 INFO 2025-06-26 14:54:54,828 create_products.py gulper_odv():522 [1] Wrote 8 Gulper data lines to /data/auv_data/dorado/missionodvs/2009.152.00/dorado_2009.152.00_1S_Gulper.txt INFO 2025-06-26 14:54:54,829 process.py archive():337 [1] Archiving steps for 2009.152.00 INFO 2025-06-26 14:54:54,829 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2009.152.00/dorado_2009.152.00, BASE_PATH = /data/auv_data INFO 2025-06-26 14:54:54,830 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2009.152.00/dorado_2009.152.00 files to /Volumes/AUVCTD/surveys/2009/netcdf INFO 2025-06-26 14:54:54,831 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.152.00_1S.nc INFO 2025-06-26 14:54:54,880 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.152.00/dorado_2009.152.00_1S.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 14:54:54,881 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.152.00_cal.nc INFO 2025-06-26 14:54:55,134 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.152.00/dorado_2009.152.00_cal.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 14:54:55,136 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.152.00_align.nc INFO 2025-06-26 14:54:55,368 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.152.00/dorado_2009.152.00_align.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 14:54:55,439 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.152.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009152/2009.152.00 done. INFO 2025-06-26 14:54:55,501 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.152.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009152/2009.152.00 done. INFO 2025-06-26 14:54:55,506 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.152.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009152/2009.152.00 done. INFO 2025-06-26 14:54:55,571 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.152.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009152/2009.152.00 done. INFO 2025-06-26 14:54:55,774 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.152.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009152/2009.152.00 done. INFO 2025-06-26 14:54:55,784 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.152.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009152/2009.152.00 done. INFO 2025-06-26 14:54:55,860 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.152.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009152/2009.152.00 done. INFO 2025-06-26 14:54:55,875 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.152.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009152/2009.152.00 done. INFO 2025-06-26 14:54:56,048 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.152.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009152/2009.152.00 done. INFO 2025-06-26 14:54:56,058 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.152.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009152/2009.152.00 done. INFO 2025-06-26 14:54:56,058 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 14:54:56,059 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2009/odv/dorado_2009.152.00_1S_Gulper.txt INFO 2025-06-26 14:54:56,064 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2009.152.00/dorado_2009.152.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2009/odv done. INFO 2025-06-26 14:54:56,064 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.152.00/dorado_2009.152.00_processing.log /Volumes/AUVCTD/surveys/2009/netcdf