INFO 2025-06-26 14:51:47,944 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 14:51:47,945 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Single dive to trip bottles at M1 - ctdToUse = ctd2 INFO 2025-06-26 14:51:47,945 process.py process_mission():449 [1] Processing AUVCTD mission 2009.126.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 14:51:47,945 process.py download_process():165 [1] Download and processing steps for 2009.126.00 INFO 2025-06-26 14:51:47,945 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2009/2009126/2009.126.00 INFO 2025-06-26 14:51:47,945 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2009/2009126/2009.126.00 to /data/auv_data/dorado/missionlogs/2009.126.00 INFO 2025-06-26 14:51:48,849 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2009.126.00 INFO 2025-06-26 14:51:48,849 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.126.00/ctdDriver.log (298364 bytes) INFO 2025-06-26 14:51:48,878 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.126.00/ctdDriver.log: [ 24 211 237 681 684 867 1021 1524 1955 2891 2979 3216] INFO 2025-06-26 14:51:48,880 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.126.00/ctdDriver2.log (298445 bytes) INFO 2025-06-26 14:51:48,908 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.126.00/ctdDriver2.log: [ 7 235 579 686 723 823 1217 1505 1526 1787 2315 2751] INFO 2025-06-26 14:51:48,909 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.126.00/gps.log (9860 bytes) INFO 2025-06-26 14:51:48,918 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.126.00/hydroscatlog.log (289990 bytes) INFO 2025-06-26 14:51:48,954 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.126.00/hydroscatlog.log: [ 3 65 297 744 757 927 1582 1603 1843 1977 2172 2333 2365 2807 3355 3395] INFO 2025-06-26 14:51:48,955 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.126.00/navigation.log (990146 bytes) INFO 2025-06-26 14:51:49,037 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.126.00/isuslog.log (19669 bytes) INFO 2025-06-26 14:51:49,043 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.126.00/isuslog.log: [1 2 3 4 5 7 8] INFO 2025-06-26 14:51:49,043 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.126.00/parosci.log (351830 bytes) INFO 2025-06-26 14:51:49,076 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.126.00/tailCone.log (43531 bytes) INFO 2025-06-26 14:51:49,088 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.126.00/biolume.log (240860 bytes) INFO 2025-06-26 14:51:49,113 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 14:51:49,128 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.28 seconds INFO 2025-06-26 14:51:49,128 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2009.126.00/lopc.bin (508760 bytes) INFO 2025-06-26 14:51:49,128 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 14:51:49 2025 INFO 2025-06-26 14:51:49,129 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2009.126.00/parosci.nc INFO 2025-06-26 14:51:49,129 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 14:51:49,129 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2009.126.00/parosci.nc INFO 2025-06-26 14:51:49,130 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1241642518.1, sensor_off_time = 1241643388.4 INFO 2025-06-26 14:51:49,130 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 870 seconds. Expecting to read 1740 L frames from the lopc.bin file. INFO 2025-06-26 14:51:49,130 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 1740 records from the lopc.bin file. INFO 2025-06-26 14:51:49,141 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2009-05-06 20:41:58 Z and endTime = 2009-05-06 20:56:28 Z with 1740 records expected to be read from lopc.bin INFO 2025-06-26 14:51:49,141 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2009.126.00/lopc.bin INFO 2025-06-26 14:51:49,141 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2009.126.00/lopc.nc INFO 2025-06-26 14:51:49,142 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2009.126.00/lopc.nc INFO 2025-06-26 14:51:49,142 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2009.126.00 INFO 2025-06-26 14:51:49,142 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 14:51:49,171 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 14:51:49,171 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 14:51:49,171 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-26 14:51:49,654 lopcToNetCDF.py main():2345 [1] >>> Done reading file. INFO 2025-06-26 14:51:49,654 lopcToNetCDF.py main():2346 [1] lFrameCount = 1737, mFrameCount = 634 INFO 2025-06-26 14:51:49,654 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2009.126.00/parosci.nc INFO 2025-06-26 14:51:49,654 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 14:51:49,654 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2009.126.00/parosci.nc INFO 2025-06-26 14:51:49,656 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1241642518.1, sensor_off_time = 1241643388.4 INFO 2025-06-26 14:51:49,656 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 870 seconds. Expecting to read 1740 L frames from the lopc.bin file. INFO 2025-06-26 14:51:49,656 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 1740 records from the lopc.bin file. INFO 2025-06-26 14:51:49,656 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 10393 and len(sampleCountList) = 1748 INFO 2025-06-26 14:51:49,657 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 14:51:49,657 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [10393 10394 10395 ... 30416 30417 30418] INFO 2025-06-26 14:51:49,657 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 14:51:49,657 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 14:51:49,657 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 ... 1 1 1] INFO 2025-06-26 14:51:49,657 lopcToNetCDF.py deSpike():1590 [1] Found 1 spike indicators at indices: [7] INFO 2025-06-26 14:51:49,657 lopcToNetCDF.py deSpike():1595 [1] Identifying nature of spike value = 28678 at index = 7 INFO 2025-06-26 14:51:49,658 lopcToNetCDF.py deSpike():1714 [1] This is the last element in spike_indx. No need to deSpike(). INFO 2025-06-26 14:51:49,658 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [10393 10394 10395 ... 30416 30417 30418] INFO 2025-06-26 14:51:49,658 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [10393 10394 10395 ... 30416 30417 30418] with len(correctedSampleCountList) = 1748 INFO 2025-06-26 14:51:49,658 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 10393 from all values of correctedSampleCountList INFO 2025-06-26 14:51:49,658 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 14:51:49,658 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.00000e+00 5.00000e-01 1.00000e+00 ... 1.00115e+04 1.00120e+04 1.00125e+04] INFO 2025-06-26 14:51:49,658 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.24164252e+09 1.24164252e+09 1.24164252e+09 ... 1.24165253e+09 1.24165253e+09 1.24165253e+09] INFO 2025-06-26 14:51:49,659 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1241642518.1 1241642518.6, ..., timestampArray[-2:] = 1241652530.1 1241652530.6] INFO 2025-06-26 14:51:49,661 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1241642518.080139), np.float64(1241642518.580139)], ..., timestampList[-2:] = [np.float64(1241652530.080139), np.float64(1241652530.580139)]] INFO 2025-06-26 14:51:49,661 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 1748) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 14:51:49,661 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [1700, 1721] INFO 2025-06-26 14:51:49,661 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 82 INFO 2025-06-26 14:51:49,661 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 1748 INFO 2025-06-26 14:51:49,661 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1241642518.080139), np.float64(1241642518.580139)], ..., timestampList[-2:] = [np.float64(1241652530.080139), np.float64(1241652530.580139)]] INFO 2025-06-26 14:51:49,661 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 1748) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 14:51:49,661 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(1699), np.int32(1720)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 14:51:49,661 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 82 INFO 2025-06-26 14:51:49,661 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 ERROR 2025-06-26 14:51:49,662 lopcToNetCDF.py constructTimestampList():1501 [1] Cannot interpolate to cFrameEsecsListInterpolated: array of sample points is empty INFO 2025-06-26 14:51:49,664 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 82 INFO 2025-06-26 14:51:49,664 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1241651666.580139)], ..., tsList[-2:] = [np.float64(1241652506.580139), np.float64(1241652517.080139)] INFO 2025-06-26 14:51:49,664 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2009-05-06 23:14:26 Z INFO 2025-06-26 14:51:49,664 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2009-05-06 23:28:37 Z INFO 2025-06-26 14:51:49,664 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 1737 INFO 2025-06-26 14:51:49,664 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [-9999], ..., cFrameEsecsList[-2:] = [-9999, -9999] INFO 2025-06-26 14:51:49,664 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 1969-12-31 21:13:21 Z INFO 2025-06-26 14:51:49,664 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 1969-12-31 21:13:21 Z INFO 2025-06-26 14:51:49,668 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2009.126.00/lopc.nc INFO 2025-06-26 14:51:49,668 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 14:51:49 2025 Elapsed processing time from start of processing = 0 seconds INFO 2025-06-26 14:51:49,668 process.py calibrate():227 [1] Calibration steps for 2009.126.00 INFO 2025-06-26 14:51:49,742 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 14:51:49,744 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 14:51:50,425 calibrate.py _nudge_pos():1806 [1] 101: 0.100 0.0004722 0.0002220 3744 12.53 5.594 3.283 2009-05-06T20:56:04.592148736 INFO 2025-06-26 14:51:50,643 calibrate.py _nudge_pos():1862 [1] 91: - - - 4 0.01 - - INFO 2025-06-26 14:51:50,643 calibrate.py _nudge_pos():1868 [1] Points in final series = 4187 WARNING 2025-06-26 14:51:50,653 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 14:51:51,123 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 10 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:51:51,385 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 24 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 14:51:51,412 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 24 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 14:51:51,414 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2009.126.00/ctd1.nc INFO 2025-06-26 14:51:51,415 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 14:51:51,415 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:51:51,415 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 14:51:51,614 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 24 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:51:51,641 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 24 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:51:51,643 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2009.126.00/ctd2.nc INFO 2025-06-26 14:51:51,644 calibrate.py _range_qc_combined_nc():898 [1] Setting 135 ctd2_salinity values to NaN INFO 2025-06-26 14:51:51,644 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:51:51,645 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 14:51:51,680 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 14:51:51,718 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 900 901 902 903 904 905 906 907 908 909 910 911 912 913 914 915 916 1680 1681 1682 1860 1861 1862 1863 1864 1865 1866 1867 1868 1869 1870 1871 1872 1873 1874 2040 5280 5281 5282 5283 5340 5341 5342 5343 5344 5345 5346 5347 5348 5349 5350 5351 5352 6840 6841 6842 6843 6844 6845 6846 7020 7021 7022 7023 7024 7025 7026 7027 7028 8700 8701 8702 8703 8704 8705 8706 8707 8708 8709 8710 8711 12000 12001 12002 12003 12004 12005 12006 12007 12008 12009 12010 12011 12012 12013 12060 12240 12241 12242 12243 12244 12245 12246 12247 12248 12249 12250 12251 12252 12253 12254 12600 12601 12602 12603 12604 12605 12606 12607 12608 12609 12610 12611 12612 12613 12614 12615 12616 12617 12618 13020 13021 13022 13023 13024 13025 13026 13027 13028 13029 13030 13031 13032 13033 13034 13035 17100 17101 17102 17103 17104 17105 17106 17107 17108 17109 17110 17111 17112 23400 23401 23402 23403 23404 23405 23406 23407 23408 23409 23410 23411 23412 23413 23414 24180 24181 24182 24183 24184 24185 24186 24187 24188 24189 24190 24191 24192 24193 24194 24195 24196 24197 24660 24661 24960 24961 24962 24963 24964 24965 24966 24967 24968 24969 24970 24971 24972 24973 24974 24975 35340 35341 35342 35343 35344 35345 36480 36481 36482 36483 36484 36485 36486 36487 36488 36489 36490 36491 36492 36493 36494 36495 36496 36497 37800 37801 37802 37803 37804 37805 37806 37807 37808 44280 44281 44282 44283 44284 44285 44286 44287 44288 44289 44290 50040 50041] INFO 2025-06-26 14:51:51,729 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -4 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 14:51:51,733 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 14:51:51,742 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2009.126.00 INFO 2025-06-26 14:51:51,746 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2009.126.00/dorado_2009.126.00_cal.nc INFO 2025-06-26 14:51:52,048 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 14:51:52,053 process.py align():251 [1] Alignment steps for 2009.126.00 INFO 2025-06-26 14:51:52,077 align.py process_cal():139 [1] Processing dorado_2009.126.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2009.126.00 INFO 2025-06-26 14:51:52,082 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:51:52,084 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 14:51:52,095 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:51:52,097 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 14:51:52,107 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:51:52,108 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 14:51:52,114 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 14:51:52,114 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 14:51:52,119 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:51:52,120 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 14:51:52,130 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,132 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 14:51:52,142 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,144 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 14:51:52,154 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,156 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 3.98 INFO 2025-06-26 14:51:52,166 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,167 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:51:52,178 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,180 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:51:52,190 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,191 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:51:52,202 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,204 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:51:52,214 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,216 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:51:52,226 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,227 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:51:52,238 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,239 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:51:52,250 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,252 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:51:52,262 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,264 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:51:52,274 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,275 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:51:52,286 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,288 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:51:52,299 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,300 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:51:52,311 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,313 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:51:52,323 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,325 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:51:52,336 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,338 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:51:52,349 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,350 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:51:52,361 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.126.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:51:52,363 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 14:51:52,376 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.74 INFO 2025-06-26 14:51:52,389 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.74 INFO 2025-06-26 14:51:52,402 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.74 INFO 2025-06-26 14:51:52,415 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 14:51:52,429 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 14:51:52,442 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 14:51:52,456 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 14:51:52,469 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 14:51:52,483 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 14:51:52,496 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.03 INFO 2025-06-26 14:51:52,506 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2009.126.00/dorado_2009.126.00_align.nc INFO 2025-06-26 14:51:52,554 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 14:51:52,556 process.py resample():273 [1] Resampling steps for 2009.126.00 INFO 2025-06-26 14:51:52,557 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 14:51:52,579 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.126.00/dorado_2009.126.00_align.nc mission netCDF file INFO 2025-06-26 14:51:52,584 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.126.00/dorado_2009.126.00_align.nc mission netCDF file INFO 2025-06-26 14:51:52,585 resample.py get_mission_start_end():1145 [1] navigation: 2009-05-06T20:42:27.128148992 to 2009-05-06T20:56:28.390518784 (0 days 02:32:08.689620224 before mission_end) WARNING 2025-06-26 14:51:52,586 resample.py get_mission_start_end():1156 [1] Instrument navigation has a gap > 5 minutes at the end of the mission: 0 days 02:32:08.689620224 INFO 2025-06-26 14:51:52,587 resample.py get_mission_start_end():1145 [1] hs2 : 2009-05-06T20:42:08.399431936 to 2009-05-06T20:56:28.360520704 (0 days 02:32:08.719618304 before mission_end) WARNING 2025-06-26 14:51:52,588 resample.py get_mission_start_end():1156 [1] Instrument hs2 has a gap > 5 minutes at the end of the mission: 0 days 02:32:08.719618304 INFO 2025-06-26 14:51:52,588 resample.py get_mission_start_end():1145 [1] ctd1 : 2009-05-06T20:42:23.058427904 to 2009-05-06T20:56:28.530509056 (0 days 02:32:08.549629952 before mission_end) WARNING 2025-06-26 14:51:52,589 resample.py get_mission_start_end():1156 [1] Instrument ctd1 has a gap > 5 minutes at the end of the mission: 0 days 02:32:08.549629952 INFO 2025-06-26 14:51:52,590 resample.py get_mission_start_end():1145 [1] ctd2 : 2009-05-06T20:42:22.618458112 to 2009-05-06T20:56:28.340521984 (0 days 02:32:08.739617024 before mission_end) WARNING 2025-06-26 14:51:52,591 resample.py get_mission_start_end():1156 [1] Instrument ctd2 has a gap > 5 minutes at the end of the mission: 0 days 02:32:08.739617024 INFO 2025-06-26 14:51:52,592 resample.py get_mission_start_end():1145 [1] isus : 2009-05-06T20:42:53.476344064 to 2009-05-06T20:56:27.330591232 (0 days 02:32:09.749547776 before mission_end) WARNING 2025-06-26 14:51:52,593 resample.py get_mission_start_end():1156 [1] Instrument isus has a gap > 5 minutes at the end of the mission: 0 days 02:32:09.749547776 INFO 2025-06-26 14:51:52,594 resample.py get_mission_start_end():1145 [1] biolume : 2009-05-06T20:41:54.090377984 to 2009-05-06T20:56:27.520543744 (0 days 02:32:09.559595264 before mission_end) WARNING 2025-06-26 14:51:52,594 resample.py get_mission_start_end():1156 [1] Instrument biolume has a gap > 5 minutes at the end of the mission: 0 days 02:32:09.559595264 INFO 2025-06-26 14:51:52,595 resample.py get_mission_start_end():1145 [1] lopc : 2009-05-06T23:14:26.580139008 to 2009-05-06T23:28:37.080139008 (0 days 00:00:00 before mission_end) INFO 2025-06-26 14:51:52,596 resample.py get_mission_start_end():1145 [1] tailcone : 2009-05-06T20:41:58.980077312 to 2009-05-06T20:56:28.270526976 (0 days 02:32:08.809612032 before mission_end) WARNING 2025-06-26 14:51:52,597 resample.py get_mission_start_end():1156 [1] Instrument tailcone has a gap > 5 minutes at the end of the mission: 0 days 02:32:08.809612032 INFO 2025-06-26 14:51:52,597 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.126.00/dorado_2009.126.00_align.nc mission netCDF file INFO 2025-06-26 14:51:52,598 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,633 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,633 resample.py resample_variable():1038 [1] Padding navigation_roll with 0 days 02:32:08.689620224 of NaNs to the end of mission INFO 2025-06-26 14:51:52,643 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,643 resample.py resample_variable():1038 [1] Padding navigation_pitch with 0 days 02:32:08.689620224 of NaNs to the end of mission INFO 2025-06-26 14:51:52,652 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,652 resample.py resample_variable():1038 [1] Padding navigation_yaw with 0 days 02:32:08.689620224 of NaNs to the end of mission INFO 2025-06-26 14:51:52,662 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,662 resample.py resample_variable():1038 [1] Padding navigation_mWaterSpeed with 0 days 02:32:08.689620224 of NaNs to the end of mission INFO 2025-06-26 14:51:52,672 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,672 resample.py resample_variable():1038 [1] Padding hs2_bbp420 with 0 days 02:32:08.719618304 of NaNs to the end of mission INFO 2025-06-26 14:51:52,681 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,682 resample.py resample_variable():1038 [1] Padding hs2_bbp700 with 0 days 02:32:08.719618304 of NaNs to the end of mission INFO 2025-06-26 14:51:52,691 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,691 resample.py resample_variable():1038 [1] Padding hs2_fl700 with 0 days 02:32:08.719618304 of NaNs to the end of mission INFO 2025-06-26 14:51:52,700 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,700 resample.py resample_variable():1038 [1] Padding ctd1_temperature with 0 days 02:32:08.549629952 of NaNs to the end of mission INFO 2025-06-26 14:51:52,709 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,709 resample.py resample_variable():1038 [1] Padding ctd1_conductivity with 0 days 02:32:08.549629952 of NaNs to the end of mission INFO 2025-06-26 14:51:52,718 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,718 resample.py resample_variable():1038 [1] Padding ctd1_salinity with 0 days 02:32:08.549629952 of NaNs to the end of mission INFO 2025-06-26 14:51:52,726 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,726 resample.py resample_variable():1038 [1] Padding ctd1_temperature_onboard with 0 days 02:32:08.549629952 of NaNs to the end of mission INFO 2025-06-26 14:51:52,735 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,735 resample.py resample_variable():1038 [1] Padding ctd1_conductivity_onboard with 0 days 02:32:08.549629952 of NaNs to the end of mission INFO 2025-06-26 14:51:52,744 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,744 resample.py resample_variable():1038 [1] Padding ctd1_dissolvedO2 with 0 days 02:32:08.549629952 of NaNs to the end of mission INFO 2025-06-26 14:51:52,752 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,752 resample.py resample_variable():1038 [1] Padding ctd1_oxygen_mll with 0 days 02:32:08.549629952 of NaNs to the end of mission INFO 2025-06-26 14:51:52,761 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,761 resample.py resample_variable():1038 [1] Padding ctd1_oxygen_umolkg with 0 days 02:32:08.549629952 of NaNs to the end of mission INFO 2025-06-26 14:51:52,770 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,770 resample.py resample_variable():1038 [1] Padding ctd1_flow1 with 0 days 02:32:08.549629952 of NaNs to the end of mission INFO 2025-06-26 14:51:52,780 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,780 resample.py resample_variable():1038 [1] Padding ctd2_temperature with 0 days 02:32:08.739617024 of NaNs to the end of mission INFO 2025-06-26 14:51:52,790 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,790 resample.py resample_variable():1038 [1] Padding ctd2_conductivity with 0 days 02:32:08.739617024 of NaNs to the end of mission INFO 2025-06-26 14:51:52,800 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,800 resample.py resample_variable():1038 [1] Padding ctd2_salinity with 0 days 02:32:08.739617024 of NaNs to the end of mission INFO 2025-06-26 14:51:52,809 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,809 resample.py resample_variable():1038 [1] Padding ctd2_temperature_onboard with 0 days 02:32:08.739617024 of NaNs to the end of mission INFO 2025-06-26 14:51:52,818 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,818 resample.py resample_variable():1038 [1] Padding ctd2_conductivity_onboard with 0 days 02:32:08.739617024 of NaNs to the end of mission INFO 2025-06-26 14:51:52,828 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,828 resample.py resample_variable():1038 [1] Padding ctd2_flow2 with 0 days 02:32:08.739617024 of NaNs to the end of mission INFO 2025-06-26 14:51:52,837 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,837 resample.py resample_variable():1038 [1] Padding isus_nitrate with 0 days 02:32:09.749547776 of NaNs to the end of mission INFO 2025-06-26 14:51:52,846 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,846 resample.py resample_variable():1038 [1] Padding isus_temp with 0 days 02:32:09.749547776 of NaNs to the end of mission INFO 2025-06-26 14:51:52,855 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,855 resample.py resample_variable():1038 [1] Padding isus_quality with 0 days 02:32:09.749547776 of NaNs to the end of mission INFO 2025-06-26 14:51:52,865 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,865 resample.py resample_variable():1038 [1] Padding biolume_flow with 0 days 02:32:09.559595264 of NaNs to the end of mission INFO 2025-06-26 14:51:52,874 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,882 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,890 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,897 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,905 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,914 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 14:51:52,914 resample.py resample_variable():1038 [1] Padding tailcone_propRpm with 0 days 02:32:08.809612032 of NaNs to the end of mission INFO 2025-06-26 14:51:53,021 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2009.126.00/dorado_2009.126.00_1S.nc INFO 2025-06-26 14:51:54,395 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd2 INFO 2025-06-26 14:51:55,870 create_products.py gulper_odv():522 [1] Wrote 9 Gulper data lines to /data/auv_data/dorado/missionodvs/2009.126.00/dorado_2009.126.00_1S_Gulper.txt INFO 2025-06-26 14:51:55,870 process.py archive():337 [1] Archiving steps for 2009.126.00 INFO 2025-06-26 14:51:55,871 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2009.126.00/dorado_2009.126.00, BASE_PATH = /data/auv_data INFO 2025-06-26 14:51:55,871 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2009.126.00/dorado_2009.126.00 files to /Volumes/AUVCTD/surveys/2009/netcdf INFO 2025-06-26 14:51:55,872 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.126.00_1S.nc INFO 2025-06-26 14:51:55,878 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.126.00/dorado_2009.126.00_1S.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 14:51:55,879 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.126.00_cal.nc INFO 2025-06-26 14:51:55,889 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.126.00/dorado_2009.126.00_cal.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 14:51:55,889 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.126.00_align.nc INFO 2025-06-26 14:51:55,899 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.126.00/dorado_2009.126.00_align.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 14:51:55,906 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.126.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009126/2009.126.00 done. INFO 2025-06-26 14:51:55,912 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.126.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009126/2009.126.00 done. INFO 2025-06-26 14:51:55,917 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.126.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009126/2009.126.00 done. INFO 2025-06-26 14:51:55,922 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.126.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009126/2009.126.00 done. INFO 2025-06-26 14:51:55,929 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.126.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009126/2009.126.00 done. INFO 2025-06-26 14:51:55,933 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.126.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009126/2009.126.00 done. INFO 2025-06-26 14:51:55,938 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.126.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009126/2009.126.00 done. INFO 2025-06-26 14:51:55,943 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.126.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009126/2009.126.00 done. INFO 2025-06-26 14:51:55,950 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.126.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009126/2009.126.00 done. INFO 2025-06-26 14:51:55,958 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.126.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009126/2009.126.00 done. INFO 2025-06-26 14:51:55,958 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 14:51:55,959 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2009/odv/dorado_2009.126.00_1S_Gulper.txt INFO 2025-06-26 14:51:55,963 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2009.126.00/dorado_2009.126.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2009/odv done. INFO 2025-06-26 14:51:55,964 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.126.00/dorado_2009.126.00_processing.log /Volumes/AUVCTD/surveys/2009/netcdf