INFO 2025-06-26 14:42:17,672 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 14:42:17,672 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - On N-S line by M0 for ESP deployment - ctdToUse = ctd2 INFO 2025-06-26 14:42:17,672 process.py process_mission():449 [1] Processing AUVCTD mission 2009.112.07 by user docker_user on host eae60d30a712 INFO 2025-06-26 14:42:17,672 process.py download_process():165 [1] Download and processing steps for 2009.112.07 INFO 2025-06-26 14:42:17,672 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2009/2009112/2009.112.07 INFO 2025-06-26 14:42:17,672 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2009/2009112/2009.112.07 to /data/auv_data/dorado/missionlogs/2009.112.07 INFO 2025-06-26 14:42:25,222 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2009.112.07 INFO 2025-06-26 14:42:25,222 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.112.07/ctdDriver.log (23550780 bytes) INFO 2025-06-26 14:42:26,978 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.112.07/ctdDriver2.log (23550949 bytes) INFO 2025-06-26 14:42:28,715 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.112.07/gps.log (256244 bytes) INFO 2025-06-26 14:42:28,750 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.112.07/hydroscatlog.log (22474054 bytes) INFO 2025-06-26 14:42:31,110 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.112.07/navigation.log (78931978 bytes) INFO 2025-06-26 14:42:36,831 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.112.07/isuslog.log (1553013 bytes) INFO 2025-06-26 14:42:36,987 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.112.07/parosci.log (27408422 bytes) INFO 2025-06-26 14:42:39,338 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.112.07/tailCone.log (3262939 bytes) INFO 2025-06-26 14:42:39,786 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.112.07/biolume.log (18207820 bytes) INFO 2025-06-26 14:42:41,692 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 14:42:42,672 logs2netcdfs.py download_process_logs():807 [1] Time to process: 17.45 seconds INFO 2025-06-26 14:42:42,673 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2009.112.07/lopc.bin (186559971 bytes) INFO 2025-06-26 14:42:42,673 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 14:42:42 2025 INFO 2025-06-26 14:42:42,673 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2009.112.07/parosci.nc INFO 2025-06-26 14:42:42,673 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 14:42:42,673 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2009.112.07/parosci.nc INFO 2025-06-26 14:42:42,677 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1240439726.5, sensor_off_time = 1240506648.4 INFO 2025-06-26 14:42:42,677 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 66921 seconds. Expecting to read 133842 L frames from the lopc.bin file. INFO 2025-06-26 14:42:42,677 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 133842 records from the lopc.bin file. INFO 2025-06-26 14:42:43,482 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2009-04-22 22:35:26 Z and endTime = 2009-04-23 17:10:48 Z with 133842 records expected to be read from lopc.bin INFO 2025-06-26 14:42:43,483 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2009.112.07/lopc.bin INFO 2025-06-26 14:42:43,483 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2009.112.07/lopc.nc INFO 2025-06-26 14:42:43,483 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2009.112.07/lopc.nc INFO 2025-06-26 14:42:43,484 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2009.112.07 INFO 2025-06-26 14:42:43,484 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 14:42:43,518 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 14:42:43,518 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 14:42:43,518 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 14:42:44,253 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 14:42:44,255 process.py calibrate():227 [1] Calibration steps for 2009.112.07 INFO 2025-06-26 14:42:44,876 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 14:42:44,878 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 14:42:45,813 calibrate.py _nudge_pos():1806 [1] 115: 0.080 0.0001253 0.0002477 2085 6.95 2.677 6.607 2009-04-22T22:44:16.543471872 INFO 2025-06-26 14:42:46,532 calibrate.py _nudge_pos():1806 [1] 185: 0.090 -0.0003180 0.0020882 8025 26.75 -1.764 14.467 2009-04-22T23:12:10.538795264 INFO 2025-06-26 14:42:47,322 calibrate.py _nudge_pos():1806 [1] 262: 0.100 -0.0006883 0.0011822 6910 23.03 -4.434 9.512 2009-04-22T23:36:28.538915328 INFO 2025-06-26 14:42:47,992 calibrate.py _nudge_pos():1806 [1] 327: 0.100 0.0000017 0.0002499 6190 20.63 0.012 2.244 2009-04-22T23:58:10.539722240 INFO 2025-06-26 14:42:48,790 calibrate.py _nudge_pos():1806 [1] 404: 0.100 0.0001442 -0.0009304 12280 40.93 0.523 -4.212 2009-04-23T00:40:22.546267904 INFO 2025-06-26 14:42:49,676 calibrate.py _nudge_pos():1806 [1] 490: 0.100 0.0002244 -0.0004352 6235 20.78 1.602 -3.881 2009-04-23T01:02:34.545019648 INFO 2025-06-26 14:42:50,477 calibrate.py _nudge_pos():1806 [1] 567: 0.110 0.0001981 -0.0007821 12460 41.53 0.707 -3.490 2009-04-23T01:45:22.539100160 INFO 2025-06-26 14:42:51,201 calibrate.py _nudge_pos():1806 [1] 636: 0.110 0.0002391 -0.0003658 6680 22.26 1.592 -3.045 2009-04-23T02:08:46.542919168 INFO 2025-06-26 14:42:51,976 calibrate.py _nudge_pos():1806 [1] 710: 0.110 0.0001442 -0.0000157 5245 17.48 1.223 -0.167 2009-04-23T02:27:28.546056704 INFO 2025-06-26 14:42:52,737 calibrate.py _nudge_pos():1806 [1] 782: 0.120 0.0000637 -0.0000594 4415 14.71 0.642 -0.748 2009-04-23T02:43:22.540703488 INFO 2025-06-26 14:42:53,478 calibrate.py _nudge_pos():1806 [1] 853: 0.110 0.0002217 -0.0000378 4360 14.53 2.262 -0.483 2009-04-23T02:59:04.546171904 INFO 2025-06-26 14:42:54,193 calibrate.py _nudge_pos():1806 [1] 921: 0.120 0.0002302 -0.0000644 5125 17.08 1.998 -0.699 2009-04-23T03:17:16.541365248 INFO 2025-06-26 14:42:54,961 calibrate.py _nudge_pos():1806 [1] 992: 0.110 0.0026796 0.0001167 5800 19.33 20.549 1.119 2009-04-23T03:37:46.547104000 INFO 2025-06-26 14:42:55,635 calibrate.py _nudge_pos():1806 [1] 1056: 0.120 0.0023074 -0.0002625 5085 16.95 20.186 -2.870 2009-04-23T03:55:46.543119104 INFO 2025-06-26 14:42:56,398 calibrate.py _nudge_pos():1806 [1] 1129: 0.120 0.0021153 -0.0001738 4620 15.40 20.371 -2.091 2009-04-23T04:12:22.544888320 INFO 2025-06-26 14:42:57,083 calibrate.py _nudge_pos():1806 [1] 1195: 0.130 0.0022154 -0.0001982 5225 17.41 18.867 -2.109 2009-04-23T04:30:52.538848512 INFO 2025-06-26 14:42:57,824 calibrate.py _nudge_pos():1806 [1] 1266: 0.120 0.0011245 -0.0011358 12340 41.13 4.055 -5.117 2009-04-23T05:13:10.544983040 INFO 2025-06-26 14:42:58,518 calibrate.py _nudge_pos():1806 [1] 1332: 0.140 0.0007850 -0.0003367 5915 19.71 5.906 -3.165 2009-04-23T05:33:58.539489792 INFO 2025-06-26 14:42:59,394 calibrate.py _nudge_pos():1806 [1] 1415: 0.130 0.0009233 -0.0010985 12280 40.93 3.346 -4.973 2009-04-23T06:16:16.545624320 INFO 2025-06-26 14:43:00,089 calibrate.py _nudge_pos():1806 [1] 1480: 0.130 0.0007504 -0.0003905 5710 19.03 5.849 -3.802 2009-04-23T06:36:22.543007744 INFO 2025-06-26 14:43:00,899 calibrate.py _nudge_pos():1806 [1] 1554: 0.140 0.0033994 -0.0001404 7615 25.38 19.871 -1.025 2009-04-23T07:02:58.543674368 INFO 2025-06-26 14:43:01,615 calibrate.py _nudge_pos():1806 [1] 1620: 0.140 0.0029109 -0.0010891 7655 25.51 16.931 -7.910 2009-04-23T07:29:34.544340736 INFO 2025-06-26 14:43:02,432 calibrate.py _nudge_pos():1806 [1] 1694: 0.140 0.0021954 -0.0012658 7705 25.68 12.689 -9.133 2009-04-23T07:56:28.543774464 INFO 2025-06-26 14:43:03,178 calibrate.py _nudge_pos():1806 [1] 1763: 0.140 -0.0014048 -0.0002410 8330 27.76 -7.508 -1.608 2009-04-23T08:25:22.544986880 INFO 2025-06-26 14:43:03,243 calibrate.py _nudge_pos():1806 [1] 1769: 0.150 0.0000176 -0.0000106 80 0.26 9.929 -7.451 2009-04-23T08:25:43.543548672 INFO 2025-06-26 14:43:04,151 calibrate.py _nudge_pos():1806 [1] 1853: 0.150 -0.0007032 -0.0004322 7850 26.16 -3.987 -3.061 2009-04-23T08:53:16.540310528 INFO 2025-06-26 14:43:04,915 calibrate.py _nudge_pos():1806 [1] 1924: 0.150 -0.0003492 -0.0002075 8200 27.33 -1.895 -1.407 2009-04-23T09:21:46.543167232 INFO 2025-06-26 14:43:05,659 calibrate.py _nudge_pos():1806 [1] 1993: 0.150 0.0001404 -0.0009472 13310 44.36 0.469 -3.956 2009-04-23T10:07:16.546149376 INFO 2025-06-26 14:43:06,454 calibrate.py _nudge_pos():1806 [1] 2067: 0.160 0.0001563 -0.0003950 5815 19.38 1.196 -3.776 2009-04-23T10:27:52.541477888 INFO 2025-06-26 14:43:07,362 calibrate.py _nudge_pos():1806 [1] 2151: 0.170 0.0000605 -0.0009096 12905 43.01 0.208 -3.918 2009-04-23T11:12:16.538981376 INFO 2025-06-26 14:43:08,269 calibrate.py _nudge_pos():1806 [1] 2233: 0.170 0.0002882 -0.0003820 5355 17.85 2.395 -3.966 2009-04-23T11:31:28.540064000 INFO 2025-06-26 14:43:09,255 calibrate.py _nudge_pos():1806 [1] 2322: 0.160 0.0002733 0.0000061 4900 16.33 2.482 0.069 2009-04-23T11:49:16.546900480 INFO 2025-06-26 14:43:10,018 calibrate.py _nudge_pos():1806 [1] 2391: 0.170 0.0002336 -0.0000186 4670 15.56 2.225 -0.222 2009-04-23T12:05:58.538259456 INFO 2025-06-26 14:43:10,809 calibrate.py _nudge_pos():1806 [1] 2463: 0.170 0.0002366 -0.0000259 4205 14.01 2.503 -0.343 2009-04-23T12:21:10.545782528 INFO 2025-06-26 14:43:11,602 calibrate.py _nudge_pos():1806 [1] 2535: 0.170 0.0001859 0.0000136 4415 14.71 1.873 0.171 2009-04-23T12:37:04.540429568 INFO 2025-06-26 14:43:12,356 calibrate.py _nudge_pos():1806 [1] 2602: 0.180 0.0025358 0.0001575 5700 19.00 19.788 1.537 2009-04-23T12:57:10.537812992 INFO 2025-06-26 14:43:13,196 calibrate.py _nudge_pos():1806 [1] 2678: 0.170 0.0022768 -0.0001634 4845 16.15 20.905 -1.875 2009-04-23T13:14:34.546293504 INFO 2025-06-26 14:43:13,952 calibrate.py _nudge_pos():1806 [1] 2747: 0.180 0.0022226 -0.0001651 4970 16.56 19.897 -1.847 2009-04-23T13:32:16.543541760 INFO 2025-06-26 14:43:14,715 calibrate.py _nudge_pos():1806 [1] 2816: 0.180 0.0022679 -0.0001882 5450 18.16 18.516 -1.920 2009-04-23T13:51:34.544213248 INFO 2025-06-26 14:43:15,661 calibrate.py _nudge_pos():1806 [1] 2900: 0.190 0.0009007 -0.0010245 11405 38.01 3.514 -4.994 2009-04-23T14:30:58.542268160 INFO 2025-06-26 14:43:16,344 calibrate.py _nudge_pos():1806 [1] 2961: 0.190 0.0006618 -0.0003662 5370 17.90 5.485 -3.792 2009-04-23T14:49:52.544583680 INFO 2025-06-26 14:43:17,129 calibrate.py _nudge_pos():1806 [1] 3031: 0.190 0.0009203 -0.0009848 12285 40.95 3.333 -4.457 2009-04-23T15:31:58.541541120 INFO 2025-06-26 14:43:17,828 calibrate.py _nudge_pos():1806 [1] 3094: 0.200 0.0007194 -0.0003969 4940 16.46 6.482 -4.467 2009-04-23T15:49:28.539611392 INFO 2025-06-26 14:43:18,620 calibrate.py _nudge_pos():1806 [1] 3166: 0.200 0.0038444 0.0001426 7595 25.31 22.532 1.044 2009-04-23T16:15:58.540688640 INFO 2025-06-26 14:43:19,319 calibrate.py _nudge_pos():1806 [1] 3229: 0.200 0.0045869 -0.0002845 7279 24.26 28.057 -2.173 2009-04-23T16:41:16.546698240 INFO 2025-06-26 14:43:20,098 calibrate.py _nudge_pos():1806 [1] 3299: 0.200 0.0044236 -0.0005001 7274 24.24 27.082 -3.823 2009-04-23T17:06:40.542297344 INFO 2025-06-26 14:43:22,823 calibrate.py _nudge_pos():1862 [1] 3514: - - - 3 0.01 - - INFO 2025-06-26 14:43:22,824 calibrate.py _nudge_pos():1868 [1] Points in final series = 334138 INFO 2025-06-26 14:43:23,241 calibrate.py _depth_process():2162 [1] Removing depths outside of valid_depth_range=Range(min=-1, max=30) for self.args.mission=2009.112.07 INFO 2025-06-26 14:43:23,249 calibrate.py _depth_process():2175 [1] Setting 196 depths values to NaN WARNING 2025-06-26 14:43:23,258 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 14:43:25,678 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:43:28,135 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:43:30,108 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:43:30,112 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2009.112.07/ctd1.nc INFO 2025-06-26 14:43:30,114 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 14:43:30,114 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:43:30,114 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 14:43:32,516 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:43:34,480 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:43:34,484 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2009.112.07/ctd2.nc INFO 2025-06-26 14:43:34,486 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 14:43:34,486 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:43:34,486 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 14:43:34,578 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 14:43:37,643 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 21600 53100 92340 115860 203100 261180 283980 339600 431820 544620 791400 1310520 1418880 1418881 1418882 1418883 1418884 1418885 1418886 1418887 1418888 1418889 1418890 1418891 1418892 1418893 1418894 1418895 1418896 1418897 1418898 1418899 1418900 1418901 1418902 1418903 1418904 1418905 1418906 1418907 1418908 1418909 1418910 1418911 1418912 1418913 1418914 1418915 1418916 1418917 1418918 1418919 1418920 1418921 1418922 1418923 1418924 1418925 1418926 1418927 1418928 1418929 1418930 1589400 1589401 1864620 2263980 2495460 2495461 3139680 3502200 3502201 3602880 3602881 3622440 3622441 3622442 3622443 3622444 3973920 3973921] INFO 2025-06-26 14:43:38,296 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 14:43:38,302 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 14:43:38,303 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2009.112.07 ERROR 2025-06-26 14:43:38,303 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2009.112.07 INFO 2025-06-26 14:43:38,358 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2009.112.07/dorado_2009.112.07_cal.nc INFO 2025-06-26 14:43:38,549 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 14:43:38,556 process.py align():251 [1] Alignment steps for 2009.112.07 INFO 2025-06-26 14:43:38,597 align.py process_cal():139 [1] Processing dorado_2009.112.07_cal.nc from /data/auv_data/dorado/missionnetcdfs/2009.112.07 INFO 2025-06-26 14:43:38,685 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:43:38,694 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:43:38,905 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:43:38,917 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:43:39,122 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:43:39,134 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:43:39,260 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 14:43:39,260 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 14:43:39,339 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:43:39,351 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:43:39,555 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:39,565 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:39,742 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:39,752 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:39,929 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:39,939 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:40,124 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:40,134 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:40,319 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:40,329 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:40,505 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:40,515 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:40,695 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:40,705 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:40,881 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:40,891 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:41,072 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:41,082 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:41,258 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:41,270 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:41,450 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:41,461 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:41,638 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:41,648 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:41,832 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:41,841 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:42,019 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:42,029 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:42,208 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:42,219 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:42,399 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:42,410 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:42,590 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:42,600 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:42,778 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:42,791 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:42,972 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:42,982 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:43,174 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.112.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:43:43,184 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:43:43,419 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:43:43,561 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:43:43,695 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:43:43,835 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 14:43:43,981 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.02 INFO 2025-06-26 14:43:44,022 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2009.112.07/dorado_2009.112.07_align.nc INFO 2025-06-26 14:43:44,160 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 14:43:44,162 process.py resample():273 [1] Resampling steps for 2009.112.07 INFO 2025-06-26 14:43:44,162 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 14:43:44,194 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.112.07/dorado_2009.112.07_align.nc mission netCDF file INFO 2025-06-26 14:43:44,202 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.112.07/dorado_2009.112.07_align.nc mission netCDF file INFO 2025-06-26 14:43:44,204 resample.py get_mission_start_end():1145 [1] navigation: 2009-04-22T22:35:58.777571328 to 2009-04-23T17:10:48.345321984 (0 days 00:00:00.009999104 before mission_end) INFO 2025-06-26 14:43:44,206 resample.py get_mission_start_end():1145 [1] hs2 : 2009-04-22T22:35:31.829417216 to 2009-04-23T17:10:48.355321088 (0 days 00:00:00 before mission_end) INFO 2025-06-26 14:43:44,209 resample.py get_mission_start_end():1145 [1] ctd1 : 2009-04-22T22:35:45.408486912 to 2009-04-23T17:10:48.255328000 (0 days 00:00:00.099993088 before mission_end) INFO 2025-06-26 14:43:44,211 resample.py get_mission_start_end():1145 [1] ctd2 : 2009-04-22T22:35:45.528478720 to 2009-04-23T17:10:48.285326080 (0 days 00:00:00.069995008 before mission_end) INFO 2025-06-26 14:43:44,213 resample.py get_mission_start_end():1145 [1] isus : 2009-04-22T22:36:44.614431232 to 2009-04-23T17:10:47.235397888 (0 days 00:00:01.119923200 before mission_end) INFO 2025-06-26 14:43:44,215 resample.py get_mission_start_end():1145 [1] biolume : 2009-04-22T22:35:25.479817984 to 2009-04-23T17:10:47.385353216 (0 days 00:00:00.969967872 before mission_end) INFO 2025-06-26 14:43:44,216 resample.py get_mission_start_end():1145 [1] tailcone : 2009-04-22T22:35:31.869414400 to 2009-04-23T17:10:47.775360768 (0 days 00:00:00.579960320 before mission_end) INFO 2025-06-26 14:43:44,217 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.112.07/dorado_2009.112.07_align.nc mission netCDF file INFO 2025-06-26 14:43:44,217 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:44,891 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:44,998 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:45,105 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:45,209 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:45,298 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:45,386 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:45,475 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:45,562 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:45,644 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:45,726 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:45,808 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:45,890 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:45,972 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:46,053 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:46,134 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:46,216 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:46,302 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:46,390 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:46,478 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:46,565 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:46,652 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:46,738 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:46,772 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:46,799 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:46,824 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:46,855 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:46,887 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 14:43:47,354 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2009.112.07/dorado_2009.112.07_1S.nc INFO 2025-06-26 14:43:50,001 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd2 INFO 2025-06-26 14:44:00,624 create_products.py gulper_odv():522 [1] Wrote 10 Gulper data lines to /data/auv_data/dorado/missionodvs/2009.112.07/dorado_2009.112.07_1S_Gulper.txt INFO 2025-06-26 14:44:00,624 process.py archive():337 [1] Archiving steps for 2009.112.07 INFO 2025-06-26 14:44:00,625 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2009.112.07/dorado_2009.112.07, BASE_PATH = /data/auv_data INFO 2025-06-26 14:44:00,626 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2009.112.07/dorado_2009.112.07 files to /Volumes/AUVCTD/surveys/2009/netcdf INFO 2025-06-26 14:44:00,627 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.112.07_1S.nc INFO 2025-06-26 14:44:00,670 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.112.07/dorado_2009.112.07_1S.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 14:44:00,671 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.112.07_cal.nc INFO 2025-06-26 14:44:00,907 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.112.07/dorado_2009.112.07_cal.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 14:44:00,908 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.112.07_align.nc INFO 2025-06-26 14:44:01,113 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.112.07/dorado_2009.112.07_align.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 14:44:01,174 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.112.07/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009112/2009.112.07 done. INFO 2025-06-26 14:44:01,234 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.112.07/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009112/2009.112.07 done. INFO 2025-06-26 14:44:01,239 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.112.07/gps.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009112/2009.112.07 done. INFO 2025-06-26 14:44:01,305 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.112.07/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009112/2009.112.07 done. INFO 2025-06-26 14:44:01,497 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.112.07/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009112/2009.112.07 done. INFO 2025-06-26 14:44:01,507 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.112.07/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009112/2009.112.07 done. INFO 2025-06-26 14:44:01,585 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.112.07/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009112/2009.112.07 done. INFO 2025-06-26 14:44:01,601 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.112.07/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009112/2009.112.07 done. INFO 2025-06-26 14:44:01,774 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.112.07/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009112/2009.112.07 done. INFO 2025-06-26 14:44:01,783 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.112.07/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009112/2009.112.07 done. INFO 2025-06-26 14:44:01,783 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 14:44:01,785 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2009/odv/dorado_2009.112.07_1S_Gulper.txt INFO 2025-06-26 14:44:01,789 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2009.112.07/dorado_2009.112.07_1S_Gulper.txt /Volumes/AUVCTD/surveys/2009/odv done. INFO 2025-06-26 14:44:01,790 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.112.07/dorado_2009.112.07_processing.log /Volumes/AUVCTD/surveys/2009/netcdf