INFO 2025-06-26 14:35:40,028 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 14:35:40,028 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Ryan short mission, Gulpers fired - ctdToUse = ctd2 INFO 2025-06-26 14:35:40,029 process.py process_mission():449 [1] Processing AUVCTD mission 2009.084.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 14:35:40,029 process.py download_process():165 [1] Download and processing steps for 2009.084.02 INFO 2025-06-26 14:35:40,029 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2009/2009084/2009.084.02 INFO 2025-06-26 14:35:40,029 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2009/2009084/2009.084.02 to /data/auv_data/dorado/missionlogs/2009.084.02 INFO 2025-06-26 14:35:47,506 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2009.084.02 INFO 2025-06-26 14:35:47,506 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.084.02/ctdDriver.log (23383580 bytes) INFO 2025-06-26 14:35:49,211 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.084.02/ctdDriver.log: [ 925 2176 9847 10786 10855 16017 29040 33018 33690 34141 40515 54646 56363 58933 79044 93248 128687 130680 134823 138195 143013 181536 214120 231721 248563 252801 259113 263894] INFO 2025-06-26 14:35:49,280 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.084.02/ctdDriver2.log (23381549 bytes) INFO 2025-06-26 14:35:50,964 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.084.02/ctdDriver2.log: [ 1476 2256 2762 5463 8411 10036 25593 39904 56378 62548 74477 85067 86192 111418 122145 130657 134800 142990 181513 211588 225993 252378 255175] INFO 2025-06-26 14:35:51,041 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.084.02/gps.log (197276 bytes) INFO 2025-06-26 14:35:51,071 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.084.02/hydroscatlog.log (22319914 bytes) INFO 2025-06-26 14:35:53,312 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.084.02/hydroscatlog.log: [ 1 3434 5097 39032 39062 56415 58987 64538 84147 96430 149118 151022 201892 205430 207026 232268 245685 265201] INFO 2025-06-26 14:35:53,386 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.084.02/navigation.log (78369354 bytes) INFO 2025-06-26 14:35:59,036 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.084.02/isuslog.log (1542453 bytes) INFO 2025-06-26 14:35:59,181 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2009.084.02/isuslog.log: [1 2 3 4 5 6 7 8] INFO 2025-06-26 14:35:59,185 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.084.02/parosci.log (26716406 bytes) INFO 2025-06-26 14:36:01,449 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.084.02/tailCone.log (3253627 bytes) INFO 2025-06-26 14:36:01,858 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2009.084.02/biolume.log (18082972 bytes) INFO 2025-06-26 14:36:03,594 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 14:36:04,564 logs2netcdfs.py download_process_logs():807 [1] Time to process: 17.06 seconds INFO 2025-06-26 14:36:04,564 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2009.084.02/lopc.bin (202198216 bytes) INFO 2025-06-26 14:36:04,565 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 14:36:04 2025 INFO 2025-06-26 14:36:04,565 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2009.084.02/parosci.nc INFO 2025-06-26 14:36:04,565 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 14:36:04,565 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2009.084.02/parosci.nc INFO 2025-06-26 14:36:04,569 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1238017835.9, sensor_off_time = 1238084297.8 INFO 2025-06-26 14:36:04,569 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 66461 seconds. Expecting to read 132922 L frames from the lopc.bin file. INFO 2025-06-26 14:36:04,569 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 132922 records from the lopc.bin file. INFO 2025-06-26 14:36:05,374 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2009-03-25 21:50:35 Z and endTime = 2009-03-26 16:18:17 Z with 132922 records expected to be read from lopc.bin INFO 2025-06-26 14:36:05,375 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2009.084.02/lopc.bin INFO 2025-06-26 14:36:05,375 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2009.084.02/lopc.nc INFO 2025-06-26 14:36:05,376 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2009.084.02/lopc.nc INFO 2025-06-26 14:36:05,376 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2009.084.02 INFO 2025-06-26 14:36:05,376 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 14:36:05,504 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 14:36:05,504 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 14:36:05,504 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 14:36:05,806 lopcToNetCDF.py main():2340 [1] UnicodeDecodeError: 'utf-8' codec can't decode byte 0x90 in position 0: invalid start byte INFO 2025-06-26 14:36:05,806 lopcToNetCDF.py main():2341 [1] Failed to decode all of lopc.bin - resulting lopc.nc file likely incomplete INFO 2025-06-26 14:36:05,806 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2009.084.02/parosci.nc INFO 2025-06-26 14:36:05,806 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 14:36:05,806 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2009.084.02/parosci.nc INFO 2025-06-26 14:36:05,810 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1238017835.9, sensor_off_time = 1238084297.8 INFO 2025-06-26 14:36:05,810 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 66461 seconds. Expecting to read 132922 L frames from the lopc.bin file. INFO 2025-06-26 14:36:05,810 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 132922 records from the lopc.bin file. INFO 2025-06-26 14:36:05,811 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 201 and len(sampleCountList) = 168 INFO 2025-06-26 14:36:05,811 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 14:36:05,811 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368] INFO 2025-06-26 14:36:05,812 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 14:36:05,812 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 14:36:05,812 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1] INFO 2025-06-26 14:36:05,813 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-06-26 14:36:05,813 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368] INFO 2025-06-26 14:36:05,814 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368] with len(correctedSampleCountList) = 168 INFO 2025-06-26 14:36:05,815 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 201 from all values of correctedSampleCountList INFO 2025-06-26 14:36:05,815 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 14:36:05,815 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [ 0. 0.5 1. 1.5 2. 2.5 3. 3.5 4. 4.5 5. 5.5 6. 6.5 7. 7.5 8. 8.5 9. 9.5 10. 10.5 11. 11.5 12. 12.5 13. 13.5 14. 14.5 15. 15.5 16. 16.5 17. 17.5 18. 18.5 19. 19.5 20. 20.5 21. 21.5 22. 22.5 23. 23.5 24. 24.5 25. 25.5 26. 26.5 27. 27.5 28. 28.5 29. 29.5 30. 30.5 31. 31.5 32. 32.5 33. 33.5 34. 34.5 35. 35.5 36. 36.5 37. 37.5 38. 38.5 39. 39.5 40. 40.5 41. 41.5 42. 42.5 43. 43.5 44. 44.5 45. 45.5 46. 46.5 47. 47.5 48. 48.5 49. 49.5 50. 50.5 51. 51.5 52. 52.5 53. 53.5 54. 54.5 55. 55.5 56. 56.5 57. 57.5 58. 58.5 59. 59.5 60. 60.5 61. 61.5 62. 62.5 63. 63.5 64. 64.5 65. 65.5 66. 66.5 67. 67.5 68. 68.5 69. 69.5 70. 70.5 71. 71.5 72. 72.5 73. 73.5 74. 74.5 75. 75.5 76. 76.5 77. 77.5 78. 78.5 79. 79.5 80. 80.5 81. 81.5 82. 82.5 83. 83.5] INFO 2025-06-26 14:36:05,816 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.23801784e+09 1.23801784e+09 1.23801784e+09 1.23801784e+09 1.23801784e+09 1.23801784e+09 1.23801784e+09 1.23801784e+09 1.23801784e+09 1.23801784e+09 1.23801784e+09 1.23801784e+09 1.23801784e+09 1.23801784e+09 1.23801784e+09 1.23801784e+09 1.23801784e+09 1.23801784e+09 1.23801784e+09 1.23801785e+09 1.23801785e+09 1.23801785e+09 1.23801785e+09 1.23801785e+09 1.23801785e+09 1.23801785e+09 1.23801785e+09 1.23801785e+09 1.23801785e+09 1.23801785e+09 1.23801785e+09 1.23801785e+09 1.23801785e+09 1.23801785e+09 1.23801785e+09 1.23801785e+09 1.23801785e+09 1.23801785e+09 1.23801785e+09 1.23801786e+09 1.23801786e+09 1.23801786e+09 1.23801786e+09 1.23801786e+09 1.23801786e+09 1.23801786e+09 1.23801786e+09 1.23801786e+09 1.23801786e+09 1.23801786e+09 1.23801786e+09 1.23801786e+09 1.23801786e+09 1.23801786e+09 1.23801786e+09 1.23801786e+09 1.23801786e+09 1.23801786e+09 1.23801786e+09 1.23801787e+09 1.23801787e+09 1.23801787e+09 1.23801787e+09 1.23801787e+09 1.23801787e+09 1.23801787e+09 1.23801787e+09 1.23801787e+09 1.23801787e+09 1.23801787e+09 1.23801787e+09 1.23801787e+09 1.23801787e+09 1.23801787e+09 1.23801787e+09 1.23801787e+09 1.23801787e+09 1.23801787e+09 1.23801787e+09 1.23801788e+09 1.23801788e+09 1.23801788e+09 1.23801788e+09 1.23801788e+09 1.23801788e+09 1.23801788e+09 1.23801788e+09 1.23801788e+09 1.23801788e+09 1.23801788e+09 1.23801788e+09 1.23801788e+09 1.23801788e+09 1.23801788e+09 1.23801788e+09 1.23801788e+09 1.23801788e+09 1.23801788e+09 1.23801788e+09 1.23801789e+09 1.23801789e+09 1.23801789e+09 1.23801789e+09 1.23801789e+09 1.23801789e+09 1.23801789e+09 1.23801789e+09 1.23801789e+09 1.23801789e+09 1.23801789e+09 1.23801789e+09 1.23801789e+09 1.23801789e+09 1.23801789e+09 1.23801789e+09 1.23801789e+09 1.23801789e+09 1.23801789e+09 1.23801789e+09 1.23801790e+09 1.23801790e+09 1.23801790e+09 1.23801790e+09 1.23801790e+09 1.23801790e+09 1.23801790e+09 1.23801790e+09 1.23801790e+09 1.23801790e+09 1.23801790e+09 1.23801790e+09 1.23801790e+09 1.23801790e+09 1.23801790e+09 1.23801790e+09 1.23801790e+09 1.23801790e+09 1.23801790e+09 1.23801790e+09 1.23801791e+09 1.23801791e+09 1.23801791e+09 1.23801791e+09 1.23801791e+09 1.23801791e+09 1.23801791e+09 1.23801791e+09 1.23801791e+09 1.23801791e+09 1.23801791e+09 1.23801791e+09 1.23801791e+09 1.23801791e+09 1.23801791e+09 1.23801791e+09 1.23801791e+09 1.23801791e+09 1.23801791e+09 1.23801791e+09 1.23801792e+09 1.23801792e+09 1.23801792e+09 1.23801792e+09 1.23801792e+09 1.23801792e+09 1.23801792e+09 1.23801792e+09 1.23801792e+09] INFO 2025-06-26 14:36:05,818 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1238017835.9 1238017836.4, ..., timestampArray[-2:] = 1238017918.9 1238017919.4] INFO 2025-06-26 14:36:05,818 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1238017835.9089446), np.float64(1238017836.4089446)], ..., timestampList[-2:] = [np.float64(1238017918.9089446), np.float64(1238017919.4089446)]] INFO 2025-06-26 14:36:05,818 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 168) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 14:36:05,818 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [125, 146] INFO 2025-06-26 14:36:05,818 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 7 INFO 2025-06-26 14:36:05,818 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 168 INFO 2025-06-26 14:36:05,818 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1238017835.9089446), np.float64(1238017836.4089446)], ..., timestampList[-2:] = [np.float64(1238017918.9089446), np.float64(1238017919.4089446)]] INFO 2025-06-26 14:36:05,818 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 168) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 14:36:05,819 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(124), np.int32(145)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 14:36:05,819 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 7 INFO 2025-06-26 14:36:05,819 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 ERROR 2025-06-26 14:36:05,819 lopcToNetCDF.py constructTimestampList():1501 [1] Cannot interpolate to cFrameEsecsListInterpolated: array of sample points is empty INFO 2025-06-26 14:36:05,820 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 7 INFO 2025-06-26 14:36:05,820 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1238017845.4089446)], ..., tsList[-2:] = [np.float64(1238017897.9089446), np.float64(1238017908.4089446)] INFO 2025-06-26 14:36:05,821 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2009-03-25 21:50:45 Z INFO 2025-06-26 14:36:05,821 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2009-03-25 21:51:48 Z INFO 2025-06-26 14:36:05,821 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 166 INFO 2025-06-26 14:36:05,821 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [-9999], ..., cFrameEsecsList[-2:] = [-9999, -9999] INFO 2025-06-26 14:36:05,821 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 1969-12-31 21:13:21 Z INFO 2025-06-26 14:36:05,821 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 1969-12-31 21:13:21 Z INFO 2025-06-26 14:36:05,825 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2009.084.02/lopc.nc INFO 2025-06-26 14:36:05,825 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 14:36:05 2025 Elapsed processing time from start of processing = 1 seconds INFO 2025-06-26 14:36:05,827 process.py calibrate():227 [1] Calibration steps for 2009.084.02 INFO 2025-06-26 14:36:06,353 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 14:36:06,356 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 14:36:06,941 calibrate.py _nudge_pos():1806 [1] 82: 0.140 -0.0000273 0.0000398 4511 15.06 -0.269 0.489 2009-03-25T22:06:59.061594368 INFO 2025-06-26 14:36:07,648 calibrate.py _nudge_pos():1806 [1] 151: 0.140 -0.0000601 -0.0000768 8084 26.96 -0.331 -0.528 2009-03-25T22:35:05.066094848 INFO 2025-06-26 14:36:08,320 calibrate.py _nudge_pos():1806 [1] 215: 0.140 -0.0000066 -0.0000063 15 0.05 -20.836 -25.108 2009-03-25T22:36:11.061573888 INFO 2025-06-26 14:36:08,379 calibrate.py _nudge_pos():1806 [1] 220: 0.140 -0.0000039 -0.0000665 6337 21.13 -0.027 -0.583 2009-03-25T22:57:23.064435712 INFO 2025-06-26 14:36:09,100 calibrate.py _nudge_pos():1806 [1] 289: 0.160 -0.0000924 -0.0000664 8628 28.76 -0.476 -0.428 2009-03-25T23:27:17.061538560 INFO 2025-06-26 14:36:09,924 calibrate.py _nudge_pos():1806 [1] 365: 0.160 -0.0000373 -0.0001051 7818 26.06 -0.212 -0.747 2009-03-25T23:54:36.059259392 INFO 2025-06-26 14:36:10,718 calibrate.py _nudge_pos():1806 [1] 441: 0.160 -0.0000149 -0.0000846 5200 17.33 -0.128 -0.905 2009-03-26T00:13:11.062876416 INFO 2025-06-26 14:36:11,441 calibrate.py _nudge_pos():1806 [1] 511: 0.160 -0.0000256 -0.0000585 3193 10.65 -0.356 -1.019 2009-03-26T00:24:59.064375040 INFO 2025-06-26 14:36:11,637 calibrate.py _nudge_pos():1806 [1] 530: 0.160 -0.0000062 -0.0000106 20 0.06 -14.414 -31.143 2009-03-26T00:25:21.062868224 INFO 2025-06-26 14:36:12,201 calibrate.py _nudge_pos():1806 [1] 585: 0.160 -0.0001152 -0.0000334 9338 31.13 -0.548 -0.199 2009-03-26T00:57:23.061202176 INFO 2025-06-26 14:36:12,970 calibrate.py _nudge_pos():1806 [1] 660: 0.170 -0.0001108 -0.0001660 7009 23.36 -0.702 -1.316 2009-03-26T01:21:59.060089344 INFO 2025-06-26 14:36:13,691 calibrate.py _nudge_pos():1806 [1] 731: 0.160 -0.0000737 -0.0001722 5948 19.83 -0.550 -1.609 2009-03-26T01:42:59.063773184 INFO 2025-06-26 14:36:14,435 calibrate.py _nudge_pos():1806 [1] 802: 0.160 0.0000024 -0.0003805 5497 18.33 0.019 -3.846 2009-03-26T02:02:29.063622656 INFO 2025-06-26 14:36:15,175 calibrate.py _nudge_pos():1806 [1] 872: 0.170 0.0001024 -0.0004554 4005 13.35 1.136 -6.322 2009-03-26T02:16:59.064023552 INFO 2025-06-26 14:36:15,959 calibrate.py _nudge_pos():1806 [1] 949: 0.170 0.0000331 -0.0000767 1959 6.53 0.750 -2.178 2009-03-26T02:24:47.061963520 INFO 2025-06-26 14:36:16,514 calibrate.py _nudge_pos():1806 [1] 1004: 0.170 0.0006215 0.0008321 11126 37.10 2.481 4.156 2009-03-26T03:02:47.065772544 INFO 2025-06-26 14:36:17,250 calibrate.py _nudge_pos():1806 [1] 1075: 0.180 0.0008138 0.0009605 9129 30.43 3.961 5.849 2009-03-26T03:34:23.065887744 INFO 2025-06-26 14:36:17,436 calibrate.py _nudge_pos():1806 [1] 1093: 0.180 -0.0000161 -0.0000379 95 0.31 -7.612 -22.424 2009-03-26T03:34:59.063421696 INFO 2025-06-26 14:36:18,049 calibrate.py _nudge_pos():1806 [1] 1151: 0.180 0.0005350 0.0002196 2504 8.35 9.494 4.875 2009-03-26T03:44:17.065196032 INFO 2025-06-26 14:36:18,617 calibrate.py _nudge_pos():1806 [1] 1206: 0.190 0.0049519 -0.0017599 13737 45.80 16.022 -7.121 2009-03-26T04:30:59.063246080 INFO 2025-06-26 14:36:18,681 calibrate.py _nudge_pos():1806 [1] 1212: 0.190 0.0000055 0.0000137 335 1.11 0.733 2.274 2009-03-26T04:32:11.058313728 INFO 2025-06-26 14:36:18,713 calibrate.py _nudge_pos():1806 [1] 1215: 0.190 0.0000171 0.0000066 200 0.66 3.814 1.856 2009-03-26T04:32:53.065436160 INFO 2025-06-26 14:36:19,395 calibrate.py _nudge_pos():1806 [1] 1280: 0.190 0.0056095 -0.0026170 21514 71.73 11.593 -6.761 2009-03-26T05:45:41.066207744 INFO 2025-06-26 14:36:20,097 calibrate.py _nudge_pos():1806 [1] 1345: 0.200 0.0022669 -0.0015283 8468 28.23 11.908 -10.033 2009-03-26T06:14:59.065776384 INFO 2025-06-26 14:36:20,499 calibrate.py _nudge_pos():1806 [1] 1382: 0.190 -0.0000911 -0.0000210 49 0.16 -84.443 -24.271 2009-03-26T06:15:45.062625536 INFO 2025-06-26 14:36:20,895 calibrate.py _nudge_pos():1806 [1] 1419: 0.200 0.0032308 -0.0020943 9787 32.63 14.686 -11.894 2009-03-26T06:48:59.066027008 INFO 2025-06-26 14:36:21,298 calibrate.py _nudge_pos():1806 [1] 1457: 0.200 -0.0000312 0.0000119 24 0.08 -60.310 28.875 2009-03-26T06:49:41.063149824 INFO 2025-06-26 14:36:21,569 calibrate.py _nudge_pos():1806 [1] 1483: 0.200 0.0020867 -0.0013836 7103 23.68 13.074 -10.829 2009-03-26T07:13:47.064091904 INFO 2025-06-26 14:36:22,330 calibrate.py _nudge_pos():1806 [1] 1554: 0.200 0.0047771 -0.0040351 14316 47.73 14.854 -15.666 2009-03-26T08:02:41.063099392 INFO 2025-06-26 14:36:22,416 calibrate.py _nudge_pos():1806 [1] 1562: 0.010 -0.0000266 -0.0000247 115 0.38 -10.381 -12.035 2009-03-26T08:03:11.261030656 INFO 2025-06-26 14:36:22,872 calibrate.py _nudge_pos():1806 [1] 1605: 0.010 0.0000095 0.0000062 90 0.30 4.735 3.848 2009-03-26T08:04:11.256920576 INFO 2025-06-26 14:36:23,095 calibrate.py _nudge_pos():1806 [1] 1626: 0.010 0.0041346 -0.0034150 9857 32.86 18.676 -19.256 2009-03-26T08:37:23.260459008 INFO 2025-06-26 14:36:23,160 calibrate.py _nudge_pos():1806 [1] 1632: 0.010 0.0001307 -0.0001475 485 1.61 12.022 -16.940 2009-03-26T08:39:05.263471360 INFO 2025-06-26 14:36:23,277 calibrate.py _nudge_pos():1806 [1] 1643: 0.010 0.0000346 -0.0000230 70 0.23 22.328 -18.526 2009-03-26T08:39:29.261827328 INFO 2025-06-26 14:36:23,774 calibrate.py _nudge_pos():1806 [1] 1690: 0.020 0.0000249 0.0000137 20 0.06 58.375 40.013 2009-03-26T08:40:19.258402304 INFO 2025-06-26 14:36:23,911 calibrate.py _nudge_pos():1806 [1] 1703: 0.010 0.0015388 -0.0021515 5419 18.06 12.647 -22.070 2009-03-26T08:58:35.263320832 INFO 2025-06-26 14:36:23,996 calibrate.py _nudge_pos():1806 [1] 1711: 0.010 0.0000219 -0.0000290 115 0.38 8.547 -14.138 2009-03-26T08:59:05.261265664 INFO 2025-06-26 14:36:24,051 calibrate.py _nudge_pos():1806 [1] 1716: 0.030 0.0000140 -0.0000797 190 0.63 3.309 -23.436 2009-03-26T08:59:47.258388736 INFO 2025-06-26 14:36:24,252 calibrate.py _nudge_pos():1806 [1] 1735: 0.010 0.0000280 -0.0000304 90 0.30 14.023 -18.953 2009-03-26T09:00:23.265922048 INFO 2025-06-26 14:36:24,403 calibrate.py _nudge_pos():1806 [1] 1749: 0.010 0.0011746 -0.0013942 3895 12.98 13.435 -19.903 2009-03-26T09:13:35.261666816 INFO 2025-06-26 14:36:24,845 calibrate.py _nudge_pos():1806 [1] 1790: 0.020 0.0000091 -0.0000432 130 0.43 3.141 -18.618 2009-03-26T09:14:41.257145600 INFO 2025-06-26 14:36:25,061 calibrate.py _nudge_pos():1806 [1] 1810: 0.010 0.0043863 -0.0021312 13073 43.58 14.948 -9.062 2009-03-26T09:58:35.266703872 INFO 2025-06-26 14:36:25,868 calibrate.py _nudge_pos():1806 [1] 1885: 0.020 0.0032357 0.0007092 11268 37.56 12.797 3.499 2009-03-26T10:37:23.257225472 INFO 2025-06-26 14:36:25,969 calibrate.py _nudge_pos():1806 [1] 1894: 0.010 0.0000538 -0.0000082 20 0.06 126.206 -24.087 2009-03-26T10:37:35.266402816 INFO 2025-06-26 14:36:26,604 calibrate.py _nudge_pos():1806 [1] 1953: 0.020 0.0019987 0.0011216 8107 27.03 10.987 7.689 2009-03-26T11:05:35.261315328 INFO 2025-06-26 14:36:26,927 calibrate.py _nudge_pos():1806 [1] 1983: 0.020 0.0000252 -0.0000074 15 0.05 80.154 -29.273 2009-03-26T11:06:07.259123200 INFO 2025-06-26 14:36:27,519 calibrate.py _nudge_pos():1806 [1] 2037: 0.020 0.0009196 0.0004781 3804 12.68 10.777 6.986 2009-03-26T11:19:41.263360000 INFO 2025-06-26 14:36:28,230 calibrate.py _nudge_pos():1806 [1] 2103: 0.020 0.0023927 0.0017306 14053 46.85 7.592 6.845 2009-03-26T12:07:37.266340608 INFO 2025-06-26 14:36:28,893 calibrate.py _nudge_pos():1806 [1] 2165: 0.030 -0.0000085 0.0000283 15 0.05 -27.221 112.207 2009-03-26T12:08:41.261956352 INFO 2025-06-26 14:36:28,927 calibrate.py _nudge_pos():1806 [1] 2168: 0.030 0.0004801 -0.0019370 13607 45.36 1.573 -7.912 2009-03-26T12:54:05.265349376 INFO 2025-06-26 14:36:29,565 calibrate.py _nudge_pos():1806 [1] 2227: 0.030 -0.0000192 0.0000064 15 0.05 -61.006 25.317 2009-03-26T12:55:06.261170944 INFO 2025-06-26 14:36:29,845 calibrate.py _nudge_pos():1806 [1] 2253: 0.040 0.0000638 -0.0004203 5149 17.16 0.552 -4.538 2009-03-26T13:12:41.258898688 INFO 2025-06-26 14:36:30,537 calibrate.py _nudge_pos():1806 [1] 2317: 0.030 0.0000218 0.0000001 15 0.05 69.443 0.356 2009-03-26T13:13:47.264376832 INFO 2025-06-26 14:36:30,570 calibrate.py _nudge_pos():1806 [1] 2320: 0.040 0.0007650 -0.0000858 9886 32.96 3.448 -0.482 2009-03-26T13:46:47.258737920 INFO 2025-06-26 14:36:31,270 calibrate.py _nudge_pos():1806 [1] 2385: 0.040 0.0005356 -0.0000378 8198 27.33 2.911 -0.256 2009-03-26T14:15:11.262005760 INFO 2025-06-26 14:36:31,967 calibrate.py _nudge_pos():1806 [1] 2449: 0.040 0.0007163 -0.0000527 8504 28.35 3.753 -0.344 2009-03-26T14:44:35.261163520 INFO 2025-06-26 14:36:32,743 calibrate.py _nudge_pos():1806 [1] 2520: 0.040 0.0005888 -0.0000519 8799 29.33 2.980 -0.328 2009-03-26T15:15:05.265799680 INFO 2025-06-26 14:36:33,503 calibrate.py _nudge_pos():1806 [1] 2589: 0.050 0.0005851 -0.0000165 8479 28.26 3.072 -0.108 2009-03-26T15:44:29.264957440 INFO 2025-06-26 14:36:33,692 calibrate.py _nudge_pos():1806 [1] 2606: 0.050 0.0000342 0.0000136 70 0.23 22.056 10.988 2009-03-26T15:44:59.262902528 INFO 2025-06-26 14:36:34,196 calibrate.py _nudge_pos():1806 [1] 2652: 0.050 0.0013431 0.0004615 9223 30.75 6.482 2.781 2009-03-26T16:16:29.263428352 INFO 2025-06-26 14:36:34,274 calibrate.py _nudge_pos():1806 [1] 2659: 0.050 0.0000232 0.0000485 120 0.40 8.664 22.646 2009-03-26T16:16:59.261373440 INFO 2025-06-26 14:36:34,962 calibrate.py _nudge_pos():1806 [1] 2721: 0.050 -0.0000032 0.0000160 55 0.18 -2.672 16.458 2009-03-26T16:18:11.266440960 INFO 2025-06-26 14:36:35,043 calibrate.py _nudge_pos():1862 [1] 2695: - - - 3 0.01 - - INFO 2025-06-26 14:36:35,043 calibrate.py _nudge_pos():1868 [1] Points in final series = 331848 INFO 2025-06-26 14:36:35,460 calibrate.py _depth_process():2162 [1] Removing depths outside of valid_depth_range=Range(min=-1, max=60) for self.args.mission=2009.084.02 INFO 2025-06-26 14:36:35,468 calibrate.py _depth_process():2175 [1] Setting 2756 depths values to NaN WARNING 2025-06-26 14:36:35,476 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 14:37:10,347 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 6 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:37:29,216 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:37:31,240 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:37:31,244 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2009.084.02/ctd1.nc INFO 2025-06-26 14:37:31,246 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 14:37:31,246 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:37:31,246 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 14:37:45,796 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:37:47,753 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 14:37:47,757 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2009.084.02/ctd2.nc INFO 2025-06-26 14:37:47,759 calibrate.py _range_qc_combined_nc():898 [1] Setting 83 ctd2_salinity values to NaN INFO 2025-06-26 14:37:47,759 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 14:37:47,760 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 14:37:50,118 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 14:37:53,162 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 120 121 240 241 242 243 244 245 246 247 248 249 250 251 252 540 541 542 543 544 545 546 547 548 549 550 551 552 900 901 902 903 1680 1681 1682 1683 2040 2041 2042 2043 2044 2045 2046 2047 2048 8340 8341 8342 8343 8344 8345 8346 8347 8348 12000 12001 12002 12003 12004 12005 12006 12007 12008 12009 12010 12011 12012 18660 18661 18662 18663 18664 18665 21840 21841 21842 21843 21844 21845 21846 21847 21848 21849 21850 21851 23340 23341 23342 23343 23344 23345 23346 23347 23348 23349 23350 23640 23641 23642 23643 23644 23645 23646 39840 39841 39842 39843 39844 39845 39846 39847 39848 39849 39850 46620 46621 46622 49920 49921 49922 49923 49924 49925 49926 49927 49928 49929 49930 49931 49932 49933 49934 49935 54180 54181 54182 54183 54300 54301 54302 54303 54304 54305 64860 64861 68880 68881 68882 68883 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3148872 3148873 3148874 3177120 3203580 3203581 3203582 3203583 3203584 3203585 3345720 3346860 3346861 3346862 3346863 3346864 3346865 3346866 3346867 3346868 3346869 3346870 3346871 3346872 3429180 3477960 3477961 3477962 3477963 3477964 3477965 3477966 3478320 3478321 3478322 3478323 3478324 3478325 3478326 3478327 3478328 3478329 3478330 3478331 3478332 3478333 3478334 3541980 3541981 3541982 3541983 3541984 3541985 3541986 3622320 3622321 3622322 3622323 3622324 3622325 3622326 3622327 3622328 3622329 3622330 3622331 3640980 3640981 3640982 3640983 3640984 3640985 3640986 3640987 3640988 3640989 3654960 3730980 3730981 3730982 3730983 3730984 3763380 3763381 3763382 3767580 3960960 3960961 3960962 3960963 3960964 3960965 3960966 3960967 3960968 3965820 3965821 3965822] INFO 2025-06-26 14:37:53,765 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 14:37:53,772 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 14:37:53,782 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2009.084.02 INFO 2025-06-26 14:37:53,837 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2009.084.02/dorado_2009.084.02_cal.nc INFO 2025-06-26 14:38:14,592 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 14:38:14,604 process.py align():251 [1] Alignment steps for 2009.084.02 INFO 2025-06-26 14:38:14,644 align.py process_cal():139 [1] Processing dorado_2009.084.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2009.084.02 INFO 2025-06-26 14:38:14,727 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:38:14,736 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:38:14,959 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:38:14,974 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:38:15,175 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:38:15,190 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:38:15,312 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 14:38:15,312 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 14:38:15,399 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 14:38:15,411 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 14:38:15,607 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:15,617 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:15,788 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:15,798 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:15,973 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:15,983 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:16,156 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:16,165 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:16,342 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:16,351 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:16,522 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:16,531 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:16,704 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:16,714 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:16,885 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:16,894 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:17,070 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:17,080 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:17,252 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:17,263 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:17,438 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:17,448 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:17,621 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:17,630 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:17,803 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:17,812 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:17,985 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:17,995 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:18,173 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:18,183 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:18,363 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:18,372 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:18,550 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:18,559 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:18,732 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:18,743 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:18,917 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:18,927 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:19,100 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2009.084.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 14:38:19,109 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 14:38:19,317 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:38:19,446 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:38:19,577 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.73 INFO 2025-06-26 14:38:19,711 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 14:38:19,847 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 14:38:19,958 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 14:38:20,073 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 14:38:20,188 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 14:38:20,300 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 14:38:20,414 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 1.02 INFO 2025-06-26 14:38:20,454 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2009.084.02/dorado_2009.084.02_align.nc INFO 2025-06-26 14:38:20,605 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 14:38:20,607 process.py resample():273 [1] Resampling steps for 2009.084.02 INFO 2025-06-26 14:38:20,608 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 14:38:20,642 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.084.02/dorado_2009.084.02_align.nc mission netCDF file INFO 2025-06-26 14:38:20,651 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.084.02/dorado_2009.084.02_align.nc mission netCDF file INFO 2025-06-26 14:38:20,653 resample.py get_mission_start_end():1145 [1] navigation: 2009-03-25T21:51:07.706766336 to 2009-03-26T16:18:17.865988608 (0 days 00:00:00 before mission_end) INFO 2025-06-26 14:38:20,655 resample.py get_mission_start_end():1145 [1] hs2 : 2009-03-25T21:50:41.918533120 to 2009-03-26T16:18:17.676001792 (0 days 00:00:00.189986816 before mission_end) INFO 2025-06-26 14:38:20,658 resample.py get_mission_start_end():1145 [1] ctd1 : 2009-03-25T21:50:55.877576704 to 2009-03-26T16:18:17.735997696 (0 days 00:00:00.129990912 before mission_end) INFO 2025-06-26 14:38:20,660 resample.py get_mission_start_end():1145 [1] ctd2 : 2009-03-25T21:51:02.947092480 to 2009-03-26T16:18:17.696000256 (0 days 00:00:00.169988352 before mission_end) INFO 2025-06-26 14:38:20,662 resample.py get_mission_start_end():1145 [1] isus : 2009-03-25T21:51:35.574857216 to 2009-03-26T16:18:17.705999616 (0 days 00:00:00.159988992 before mission_end) INFO 2025-06-26 14:38:20,664 resample.py get_mission_start_end():1145 [1] biolume : 2009-03-25T21:50:34.419012608 to 2009-03-26T16:18:17.046010624 (0 days 00:00:00.819977984 before mission_end) INFO 2025-06-26 14:38:20,665 resample.py get_mission_start_end():1145 [1] lopc : 2009-03-25T21:50:45.408944640 to 2009-03-25T21:51:48.408944640 (0 days 18:26:29.457043968 before mission_end) WARNING 2025-06-26 14:38:20,666 resample.py get_mission_start_end():1156 [1] Instrument lopc has a gap > 5 minutes at the end of the mission: 0 days 18:26:29.457043968 INFO 2025-06-26 14:38:20,667 resample.py get_mission_start_end():1145 [1] tailcone : 2009-03-25T21:50:39.878672896 to 2009-03-26T16:18:17.785994240 (0 days 00:00:00.079994368 before mission_end) INFO 2025-06-26 14:38:20,668 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2009.084.02/dorado_2009.084.02_align.nc mission netCDF file INFO 2025-06-26 14:38:20,668 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:21,329 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:21,438 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:21,543 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:21,647 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:21,738 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:21,827 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:21,916 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:22,003 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:22,088 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:22,170 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:22,251 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:22,333 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:22,415 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:22,495 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:22,576 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:22,657 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:22,742 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:22,831 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:22,926 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:23,014 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:23,103 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:23,190 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:23,224 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:23,252 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:23,277 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:23,308 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:23,323 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:23,324 resample.py resample_variable():1038 [1] Padding lopc_countListSum with 0 days 18:26:29.457043968 of NaNs to the end of mission INFO 2025-06-26 14:38:23,336 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:23,336 resample.py resample_variable():1038 [1] Padding lopc_transCount with 0 days 18:26:29.457043968 of NaNs to the end of mission INFO 2025-06-26 14:38:23,346 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:23,347 resample.py resample_variable():1038 [1] Padding lopc_nonTransCount with 0 days 18:26:29.457043968 of NaNs to the end of mission INFO 2025-06-26 14:38:23,357 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:23,357 resample.py resample_variable():1038 [1] Padding lopc_LCcount with 0 days 18:26:29.457043968 of NaNs to the end of mission INFO 2025-06-26 14:38:23,367 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:23,367 resample.py resample_variable():1038 [1] Padding lopc_flowSpeed with 0 days 18:26:29.457043968 of NaNs to the end of mission INFO 2025-06-26 14:38:23,397 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 14:38:23,887 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2009.084.02/dorado_2009.084.02_1S.nc INFO 2025-06-26 14:38:26,726 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd2 INFO 2025-06-26 14:38:37,870 create_products.py gulper_odv():522 [1] Wrote 10 Gulper data lines to /data/auv_data/dorado/missionodvs/2009.084.02/dorado_2009.084.02_1S_Gulper.txt INFO 2025-06-26 14:38:37,870 process.py archive():337 [1] Archiving steps for 2009.084.02 INFO 2025-06-26 14:38:37,870 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2009.084.02/dorado_2009.084.02, BASE_PATH = /data/auv_data INFO 2025-06-26 14:38:37,872 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2009.084.02/dorado_2009.084.02 files to /Volumes/AUVCTD/surveys/2009/netcdf INFO 2025-06-26 14:38:37,873 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.084.02_1S.nc INFO 2025-06-26 14:38:37,926 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.084.02/dorado_2009.084.02_1S.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 14:38:37,927 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.084.02_cal.nc INFO 2025-06-26 14:38:38,154 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.084.02/dorado_2009.084.02_cal.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 14:38:38,155 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2009/netcdf/dorado_2009.084.02_align.nc INFO 2025-06-26 14:38:38,360 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.084.02/dorado_2009.084.02_align.nc /Volumes/AUVCTD/surveys/2009/netcdf done. INFO 2025-06-26 14:38:38,423 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.084.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009084/2009.084.02 done. INFO 2025-06-26 14:38:38,484 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.084.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009084/2009.084.02 done. INFO 2025-06-26 14:38:38,489 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.084.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009084/2009.084.02 done. INFO 2025-06-26 14:38:38,550 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.084.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009084/2009.084.02 done. INFO 2025-06-26 14:38:38,738 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.084.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009084/2009.084.02 done. INFO 2025-06-26 14:38:38,748 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.084.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009084/2009.084.02 done. INFO 2025-06-26 14:38:38,818 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.084.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009084/2009.084.02 done. INFO 2025-06-26 14:38:38,834 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.084.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009084/2009.084.02 done. INFO 2025-06-26 14:38:39,002 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.084.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009084/2009.084.02 done. INFO 2025-06-26 14:38:39,008 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.084.02/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2009/2009084/2009.084.02 done. INFO 2025-06-26 14:38:39,008 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 14:38:39,010 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2009/odv/dorado_2009.084.02_1S_Gulper.txt INFO 2025-06-26 14:38:39,014 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2009.084.02/dorado_2009.084.02_1S_Gulper.txt /Volumes/AUVCTD/surveys/2009/odv done. INFO 2025-06-26 14:38:39,015 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2009.084.02/dorado_2009.084.02_processing.log /Volumes/AUVCTD/surveys/2009/netcdf