INFO 2025-06-26 12:04:45,002 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 12:04:45,002 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - out to between M1 & M2. CTD1 was noisey - ctdToUse = ctd1 INFO 2025-06-26 12:04:45,002 process.py process_mission():449 [1] Processing AUVCTD mission 2006.270.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 12:04:45,002 process.py download_process():165 [1] Download and processing steps for 2006.270.01 INFO 2025-06-26 12:04:45,002 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2006/2006270/2006.270.01 INFO 2025-06-26 12:04:45,003 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2006/2006270/2006.270.01 to /data/auv_data/dorado/missionlogs/2006.270.01 INFO 2025-06-26 12:04:51,262 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2006.270.01 INFO 2025-06-26 12:04:51,262 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.270.01/ctdDriver.log (23633939 bytes) INFO 2025-06-26 12:04:52,972 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2006.270.01/ctdDriver.log: [ 497 1401 1526 2305 2379 5178 5581 6145 8547 9518 12655 28946 33136 53207 60904 62872 78008 92987 108447 113437 119235 120844 121114 123258 124359 128950 133357 135318 158806 159245 162115 203862 204729 204826 218271 221399 242530 247753 263746] INFO 2025-06-26 12:04:53,052 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.270.01/ctdDriver2.log (23641853 bytes) INFO 2025-06-26 12:04:54,781 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2006.270.01/ctdDriver2.log: [ 591 1447 3745 4729 6354 12743 19002 20148 24314 28549 36516 37469 38006 53301 55348 78103 90444 93087 100527 108546 111552 113536 114277 119335 121214 124459 129050 135416 138113 158906 162214 168422 184459 185988 204825 204921 206142 224699 240961 243247 247849 263836 265425] INFO 2025-06-26 12:04:54,866 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.270.01/gps.log (437036 bytes) INFO 2025-06-26 12:04:54,919 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.270.01/hydroscatlog.log (16126154 bytes) INFO 2025-06-26 12:04:56,802 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2006.270.01/hydroscatlog.log: [ 89 100 920 1016 1542 1578 1961 2058 2311 2420 2547 2568 3576 4290 4832 5346 5370 5430 5804 7240 7616 8061 12805 12845 13880 15084 21780 21781 21782 25437 25606 26292 28646 39093 45696 47184 55611 61080 70608 71743 81792 88085 97163 102554 106284 109560 110688 118724 120685 121279 132944 133396 135114 147165 157226 160997 162006 168234 168493 169357 179233 181872 183504 183505 184564 189097 190564 192185 197282 197476 203210 204042 205006 205556 206595 209690 215711 215878 216636 218457 224785 225370 228044 228743 233949 235561 242711 243036 246114 249433 251155 260922] INFO 2025-06-26 12:04:56,854 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.270.01/navigation.log (79239250 bytes) INFO 2025-06-26 12:05:02,632 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.270.01/isuslog.log (1619445 bytes) INFO 2025-06-26 12:05:02,795 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.270.01/parosci.log (34543910 bytes) INFO 2025-06-26 12:05:05,650 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2006.270.01/parosci.log: [ 2 3 16 17 18 26 28 30 31 37 39 40 45 46 59 167 168 556 674 722 994 995 1296 1381 1382 1383 1412 1413 1735 1736 1764 2292 2293 2495 2747 2748 2784 2785 2786 4150 4247 4248 4442 4602 5057 5058 5867 6380 6382 6482 6483 6680 6878 7625 8780 9232 9233 9235 9579 9744 10853 10854 11489 12941 13171 13173 13968 14308 14309 15450 17283 19380 19381 20393 21609 21610 22082 22083 22084 23487 25999 27003 27004 30385 30386 30873 30875 30876 32301 32302 34294 34295 34401 34402 36133 40380 43603 43997 43999 45473 46194 46195 46196 46197 51983 51984 56975 56977 59285 59287 60521 60944 60945 60947 65320 65321 68055 68056 68506 68507 69148 69150 70340 77266 78678 88587 88588 96333 96334 97984 98083 98084 100421 100539 101975 101977 104636 104637 108701 113038 113040 113041 116940 118601 132104 132105 144357 146461 146462 146990 146992 148802 148804 163462 165516 165692 168902 168903 168904 169410 186840 187549 188979 189845 189846 209002 209004 210460 210462 211209 211210 218873 218874 222573 229421 229422 235707 249123 249124 252652 260649 260650 260651 263013 263014 263057 263058 279397 279398 293235 295760 295761 296251 298737 304061 306039 306040 309389 309390 318591 323046 323088 323090 324640 324641 330390 330391 336855 355913 356754 356756 356757 357121 357122 357789 362728 366285 366779 366780 366781 382227 383566 405428 406658 409876 409877 410469 410471 413087 413088 413089 420994 420995 427288 428261 450063 450064 451182 451183 454160 454161 454162 455535 479973 484912 489280 491408 491409 491410 492819 492820 494205 494206 494259 497739 504404 510326 510327 510855 527388 527389 528323 528324 528843 530405 541541 544221 544222 544223 546455 546456 548777 550499 550500 561583 578155 578157 580184 585061 585233 590667 602015 602133 603579 603581 610741 610742 628923 628925 637901 641652 651668 660684 669435 670954 672613 672614 675373 675374 675375 675955 675956 676383 676384 676385 690969 691001 691002 691003 698726 699763 699765 706780 711028 716304 716305 716306] INFO 2025-06-26 12:05:05,752 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.270.01/tailCone.log (16106395 bytes) INFO 2025-06-26 12:05:07,776 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.270.01/biolume.log (18290236 bytes) INFO 2025-06-26 12:05:09,518 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 12:05:10,449 logs2netcdfs.py download_process_logs():807 [1] Time to process: 19.19 seconds WARNING 2025-06-26 12:05:10,449 process.py download_process():196 [1] No lopc.bin file for 2006.270.01 INFO 2025-06-26 12:05:10,449 process.py calibrate():227 [1] Calibration steps for 2006.270.01 INFO 2025-06-26 12:05:11,018 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 12:05:11,021 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 12:05:11,807 calibrate.py _nudge_pos():1806 [1] 94: 0.150 -0.0010301 0.0009286 2441 8.20 -18.656 20.992 2006-09-27T20:39:23.528706560 INFO 2025-06-26 12:05:12,498 calibrate.py _nudge_pos():1806 [1] 162: 0.160 -0.0029454 0.0033761 12534 41.88 -10.441 14.938 2006-09-27T21:22:23.531964416 INFO 2025-06-26 12:05:13,160 calibrate.py _nudge_pos():1806 [1] 226: 0.150 -0.0037003 0.0063396 8945 29.85 -18.406 39.359 2006-09-27T21:53:17.534956544 INFO 2025-06-26 12:05:13,845 calibrate.py _nudge_pos():1806 [1] 292: 0.170 -0.0041138 0.0076117 11095 37.01 -16.502 38.107 2006-09-27T22:31:23.528355072 INFO 2025-06-26 12:05:14,473 calibrate.py _nudge_pos():1806 [1] 352: 0.160 -0.0049963 0.0049527 12926 43.11 -17.209 21.287 2006-09-27T23:15:29.537091072 INFO 2025-06-26 12:05:15,133 calibrate.py _nudge_pos():1806 [1] 415: 0.170 -0.0013624 0.0036531 8142 27.16 -7.449 24.921 2006-09-27T23:43:41.531181568 INFO 2025-06-26 12:05:15,805 calibrate.py _nudge_pos():1806 [1] 479: 0.180 -0.0018844 0.0049255 11073 36.95 -7.575 24.703 2006-09-28T00:21:41.534990592 INFO 2025-06-26 12:05:16,516 calibrate.py _nudge_pos():1806 [1] 547: 0.190 -0.0005791 0.0010381 15320 51.08 -1.684 3.766 2006-09-28T01:13:53.530434048 INFO 2025-06-26 12:05:17,236 calibrate.py _nudge_pos():1806 [1] 614: 0.190 0.0026457 0.0008768 13370 44.60 8.812 3.643 2006-09-28T01:59:35.532594176 INFO 2025-06-26 12:05:17,976 calibrate.py _nudge_pos():1806 [1] 684: 0.200 0.0011424 -0.0006440 13623 45.44 3.735 -2.626 2006-09-28T02:46:11.531055104 INFO 2025-06-26 12:05:18,734 calibrate.py _nudge_pos():1806 [1] 755: 0.200 0.0003422 -0.0028006 15301 51.03 0.996 -10.170 2006-09-28T03:38:23.536498176 INFO 2025-06-26 12:05:19,504 calibrate.py _nudge_pos():1806 [1] 826: 0.200 0.0004204 -0.0013592 3276 10.93 5.716 -23.050 2006-09-28T03:50:29.536763648 INFO 2025-06-26 12:05:20,292 calibrate.py _nudge_pos():1806 [1] 897: 0.020 0.0054657 -0.0029604 16652 55.53 14.624 -9.879 2006-09-28T04:47:11.733697280 INFO 2025-06-26 12:05:21,082 calibrate.py _nudge_pos():1806 [1] 968: 0.020 0.0040821 -0.0012264 16652 55.53 10.921 -4.092 2006-09-28T05:43:53.730644480 INFO 2025-06-26 12:05:21,737 calibrate.py _nudge_pos():1806 [1] 1028: 0.020 0.0032754 0.0006503 16709 55.71 8.733 2.163 2006-09-28T06:40:35.727591680 INFO 2025-06-26 12:05:22,526 calibrate.py _nudge_pos():1806 [1] 1098: 0.020 0.0006572 0.0023232 10990 36.65 2.664 11.747 2006-09-28T07:18:23.732222720 INFO 2025-06-26 12:05:23,226 calibrate.py _nudge_pos():1806 [1] 1160: 0.030 -0.0004837 0.0010742 4194 13.98 -5.138 14.238 2006-09-28T07:33:23.730568704 INFO 2025-06-26 12:05:23,862 calibrate.py _nudge_pos():1806 [1] 1219: 0.020 0.0002363 0.0032449 11100 37.03 0.948 16.238 2006-09-28T08:11:23.734377728 INFO 2025-06-26 12:05:24,538 calibrate.py _nudge_pos():1806 [1] 1279: 0.030 0.0004117 0.0034832 10981 36.61 1.670 17.628 2006-09-28T08:48:59.729831424 INFO 2025-06-26 12:05:25,273 calibrate.py _nudge_pos():1806 [1] 1345: 0.020 0.0006637 0.0040484 10857 36.21 2.721 20.715 2006-09-28T09:26:17.736517376 INFO 2025-06-26 12:05:25,922 calibrate.py _nudge_pos():1806 [1] 1404: 0.030 0.0003396 0.0053531 12332 41.13 1.226 24.117 2006-09-28T10:08:23.733474816 INFO 2025-06-26 12:05:26,617 calibrate.py _nudge_pos():1806 [1] 1467: 0.050 0.0010345 0.0026872 10842 36.16 4.247 13.769 2006-09-28T10:45:35.730572544 INFO 2025-06-26 12:05:27,270 calibrate.py _nudge_pos():1806 [1] 1526: 0.040 0.0012969 0.0024723 12034 40.13 4.797 11.416 2006-09-28T11:26:41.731639808 INFO 2025-06-26 12:05:27,946 calibrate.py _nudge_pos():1806 [1] 1588: 0.050 0.0015193 0.0021032 12946 43.18 5.222 9.026 2006-09-28T12:10:53.729965568 INFO 2025-06-26 12:05:28,630 calibrate.py _nudge_pos():1806 [1] 1649: 0.060 0.0006277 0.0002493 4828 16.10 5.788 2.870 2006-09-28T12:27:59.729679872 INFO 2025-06-26 12:05:29,377 calibrate.py _nudge_pos():1806 [1] 1713: 0.060 0.0011432 0.0009849 7840 26.15 6.489 6.980 2006-09-28T12:55:11.727880192 INFO 2025-06-26 12:05:30,085 calibrate.py _nudge_pos():1806 [1] 1776: 0.050 0.0011404 0.0009641 8121 27.08 6.250 6.597 2006-09-28T13:23:18.732312320 INFO 2025-06-26 12:05:30,752 calibrate.py _nudge_pos():1806 [1] 1835: 0.050 -0.0005952 0.0022344 10618 35.41 -2.494 11.692 2006-09-28T13:59:41.732766976 INFO 2025-06-26 12:06:17,959 calibrate.py _nudge_pos():1862 [1] 6036: - - - 2 0.00 - - INFO 2025-06-26 12:06:17,959 calibrate.py _nudge_pos():1868 [1] Points in final series = 335619 WARNING 2025-06-26 12:06:29,695 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 12:07:03,622 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 2 of 268662 INFO 2025-06-26 12:07:05,647 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 12:07:24,929 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 50 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 12:07:27,031 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 50 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 12:07:27,035 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2006.270.01/ctd1.nc INFO 2025-06-26 12:07:27,036 calibrate.py _range_qc_combined_nc():898 [1] Setting 164 ctd1_salinity values to NaN INFO 2025-06-26 12:07:27,037 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 12:07:27,037 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 12:07:41,903 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 12:07:44,054 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 12:07:44,061 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2006.270.01/ctd2.nc INFO 2025-06-26 12:07:44,063 calibrate.py _range_qc_combined_nc():898 [1] Setting 159 ctd2_salinity values to NaN INFO 2025-06-26 12:07:44,064 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 12:07:44,064 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 12:07:44,159 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 12:07:47,264 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 ... 4023183 4027680 4032240] INFO 2025-06-26 12:07:47,933 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: 0 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 12:07:47,940 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 12:07:47,941 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2006.270.01 ERROR 2025-06-26 12:07:47,941 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2006.270.01 INFO 2025-06-26 12:07:48,197 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2006.270.01/dorado_2006.270.01_cal.nc INFO 2025-06-26 12:08:09,215 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 12:08:09,219 process.py align():251 [1] Alignment steps for 2006.270.01 INFO 2025-06-26 12:08:09,264 align.py process_cal():139 [1] Processing dorado_2006.270.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2006.270.01 INFO 2025-06-26 12:08:09,349 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 12:08:09,358 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 12:08:09,574 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 12:08:09,585 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 12:08:09,792 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 12:08:09,804 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 12:08:09,929 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 12:08:09,930 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 12:08:10,019 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 12:08:10,030 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 12:08:10,229 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 12:08:10,239 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:10,417 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 12:08:10,427 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:10,601 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 12:08:10,611 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:10,788 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:08:10,798 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:10,977 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:08:10,987 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:11,166 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:08:11,176 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:11,355 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:08:11,365 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:11,542 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:08:11,551 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:11,729 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:08:11,740 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:11,914 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:08:11,926 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:12,105 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:08:12,115 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:12,289 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:08:12,299 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:12,475 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:08:12,484 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:12,662 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:08:12,673 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:12,854 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:08:12,865 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:13,048 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:08:13,061 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:13,238 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:08:13,248 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:13,424 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:08:13,434 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:13,610 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:08:13,620 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:13,801 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.270.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 12:08:13,815 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 12:08:14,048 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.75 INFO 2025-06-26 12:08:14,193 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.75 INFO 2025-06-26 12:08:14,339 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.75 INFO 2025-06-26 12:08:14,492 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 12:08:14,653 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 12:08:14,789 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2006.270.01/dorado_2006.270.01_align.nc INFO 2025-06-26 12:08:14,947 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 12:08:14,949 process.py resample():273 [1] Resampling steps for 2006.270.01 INFO 2025-06-26 12:08:14,950 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 12:08:14,984 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2006.270.01/dorado_2006.270.01_align.nc mission netCDF file INFO 2025-06-26 12:08:14,993 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2006.270.01/dorado_2006.270.01_align.nc mission netCDF file INFO 2025-06-26 12:08:14,995 resample.py get_mission_start_end():1145 [1] navigation: 2006-09-27T20:30:00.097304320 to 2006-09-28T15:10:04.133512448 (0 days 00:00:00.079994368 before mission_end) INFO 2025-06-26 12:08:14,998 resample.py get_mission_start_end():1145 [1] hs2 : 2006-09-27T20:29:43.218460672 to 2006-09-28T15:10:04.183508992 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 12:08:15,001 resample.py get_mission_start_end():1145 [1] ctd1 : 2006-09-27T20:30:30.245239040 to 2006-09-28T15:10:04.113513984 (0 days 00:00:00.099992832 before mission_end) INFO 2025-06-26 12:08:15,004 resample.py get_mission_start_end():1145 [1] ctd2 : 2006-09-27T20:30:06.816844032 to 2006-09-28T15:10:04.053518080 (0 days 00:00:00.159988736 before mission_end) INFO 2025-06-26 12:08:15,006 resample.py get_mission_start_end():1145 [1] isus : 2006-09-27T20:31:06.732739328 to 2006-09-28T15:10:03.643546112 (0 days 00:00:00.569960704 before mission_end) INFO 2025-06-26 12:08:15,008 resample.py get_mission_start_end():1145 [1] biolume : 2006-09-27T20:29:39.098708736 to 2006-09-28T15:10:03.323533824 (0 days 00:00:00.889972992 before mission_end) INFO 2025-06-26 12:08:15,011 resample.py get_mission_start_end():1145 [1] tailcone : 2006-09-27T20:29:39.588709376 to 2006-09-28T15:10:04.213506816 (0 days 00:00:00 before mission_end) INFO 2025-06-26 12:08:15,012 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2006.270.01/dorado_2006.270.01_align.nc mission netCDF file INFO 2025-06-26 12:08:15,012 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:15,677 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:15,785 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:15,892 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:15,999 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:16,093 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:16,183 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:16,270 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:16,358 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:16,442 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:16,525 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:16,608 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:16,691 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:16,773 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:16,857 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:16,942 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:17,027 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:17,117 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:17,206 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:17,292 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:17,379 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:17,465 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:17,551 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:17,585 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:17,613 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:17,639 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:17,671 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:17,772 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 12:08:18,255 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2006.270.01/dorado_2006.270.01_1S.nc INFO 2025-06-26 12:08:20,665 create_products.py gulper_odv():401 [1] No gulper times found for 2006.270.01 INFO 2025-06-26 12:08:20,665 process.py archive():337 [1] Archiving steps for 2006.270.01 INFO 2025-06-26 12:08:20,665 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2006.270.01/dorado_2006.270.01, BASE_PATH = /data/auv_data INFO 2025-06-26 12:08:20,667 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2006.270.01/dorado_2006.270.01 files to /Volumes/AUVCTD/surveys/2006/netcdf INFO 2025-06-26 12:08:20,669 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2006/netcdf/dorado_2006.270.01_1S.nc INFO 2025-06-26 12:08:20,718 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.270.01/dorado_2006.270.01_1S.nc /Volumes/AUVCTD/surveys/2006/netcdf done. INFO 2025-06-26 12:08:20,720 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2006/netcdf/dorado_2006.270.01_cal.nc INFO 2025-06-26 12:08:20,976 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.270.01/dorado_2006.270.01_cal.nc /Volumes/AUVCTD/surveys/2006/netcdf done. INFO 2025-06-26 12:08:20,977 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2006/netcdf/dorado_2006.270.01_align.nc INFO 2025-06-26 12:08:21,210 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.270.01/dorado_2006.270.01_align.nc /Volumes/AUVCTD/surveys/2006/netcdf done. INFO 2025-06-26 12:08:21,269 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.270.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006270/2006.270.01 done. INFO 2025-06-26 12:08:21,327 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.270.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006270/2006.270.01 done. INFO 2025-06-26 12:08:21,334 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.270.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006270/2006.270.01 done. INFO 2025-06-26 12:08:21,375 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.270.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006270/2006.270.01 done. INFO 2025-06-26 12:08:21,567 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.270.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006270/2006.270.01 done. INFO 2025-06-26 12:08:21,577 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.270.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006270/2006.270.01 done. INFO 2025-06-26 12:08:21,672 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.270.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006270/2006.270.01 done. INFO 2025-06-26 12:08:21,727 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.270.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006270/2006.270.01 done. INFO 2025-06-26 12:08:21,897 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.270.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006270/2006.270.01 done. INFO 2025-06-26 12:08:21,898 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 12:08:21,898 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.270.01/dorado_2006.270.01_processing.log /Volumes/AUVCTD/surveys/2006/netcdf