INFO 2025-06-26 11:32:52,639 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 11:32:52,639 process.py process_mission():434 [1] dorado_info[mission]["comment"] = LOCO mission - as part of MB06 - Ryan line on way to a Chavez survey for MB06 - ctdToUse = ctd1 INFO 2025-06-26 11:32:52,639 process.py process_mission():449 [1] Processing LOCO mission 2006.219.08 by user docker_user on host eae60d30a712 INFO 2025-06-26 11:32:52,639 process.py download_process():165 [1] Download and processing steps for 2006.219.08 INFO 2025-06-26 11:32:52,639 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2006/2006219/2006.219.08 INFO 2025-06-26 11:32:52,639 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2006/2006219/2006.219.08 to /data/auv_data/dorado/missionlogs/2006.219.08 INFO 2025-06-26 11:32:53,563 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2006.219.08 INFO 2025-06-26 11:32:53,563 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.219.08/ctdDriver.log (458611 bytes) INFO 2025-06-26 11:32:53,605 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2006.219.08/ctdDriver.log: [ 548 965 3351] INFO 2025-06-26 11:32:53,607 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.219.08/ctdDriver2.log (458605 bytes) INFO 2025-06-26 11:32:53,645 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.219.08/gps.log (11300 bytes) INFO 2025-06-26 11:32:53,655 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.219.08/hydroscatlog.log (318614 bytes) INFO 2025-06-26 11:32:53,704 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2006.219.08/hydroscatlog.log: [ 453 3586] INFO 2025-06-26 11:32:53,705 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.219.08/navigation.log (1542622 bytes) INFO 2025-06-26 11:32:53,830 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.219.08/isuslog.log (30069 bytes) INFO 2025-06-26 11:32:53,838 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.219.08/parosci.log (682070 bytes) INFO 2025-06-26 11:32:53,896 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2006.219.08/parosci.log: [ 1 27 229 283 316 379 641 1381 1763 1764 2281 2301 2747 2994 4112 4242 4524 6352 8157 8867 9509 9632 10118 13262 13263 13763] INFO 2025-06-26 11:32:53,899 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.219.08/tailCone.log (316939 bytes) INFO 2025-06-26 11:32:53,944 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.219.08/biolume.log (364620 bytes) INFO 2025-06-26 11:32:53,982 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 11:32:54,004 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.44 seconds WARNING 2025-06-26 11:32:54,005 process.py download_process():196 [1] No lopc.bin file for 2006.219.08 INFO 2025-06-26 11:32:54,005 process.py calibrate():227 [1] Calibration steps for 2006.219.08 INFO 2025-06-26 11:32:54,072 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 11:32:54,074 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 11:32:54,623 calibrate.py _nudge_pos():1806 [1] 78: 0.060 -0.0001189 0.0001878 1873 6.26 -2.816 5.556 2006-08-07T15:13:18.098057472 INFO 2025-06-26 11:32:55,056 calibrate.py _nudge_pos():1806 [1] 125: 0.060 -0.0016347 -0.0010133 4057 13.53 -17.919 -13.878 2006-08-07T15:27:36.099280384 INFO 2025-06-26 11:32:55,240 calibrate.py _nudge_pos():1862 [1] 122: - - - 3 0.01 - - INFO 2025-06-26 11:32:55,240 calibrate.py _nudge_pos():1868 [1] Points in final series = 6527 WARNING 2025-06-26 11:32:55,474 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 11:32:56,189 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:32:56,582 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:32:56,624 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:32:56,626 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2006.219.08/ctd1.nc INFO 2025-06-26 11:32:56,627 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-26 11:32:56,627 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:32:56,627 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 11:32:56,687 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 11:32:56,729 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 11:32:56,731 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2006.219.08/ctd2.nc INFO 2025-06-26 11:32:56,732 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 11:32:56,733 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:32:56,733 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 11:32:56,741 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 11:32:56,798 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 360 361 362 363 364 365 420 421 422 423 424 425 1380 1381 1382 1383 1384 1385 1386 1387 1388 1389 1390 1391 7020 7021 7022 7023 10860 10861 10862 16380 16381 16382 16383 16384 16385 16386 16387 16388 16389 16390 16391 16392 23160 23161 23162 23163 23164 23165 23166 24180 24240 24241 24242 24243 26160 26161 26162 33180 33181 33182 33183 33184 33185 35340 35341 40380 44760 44761 44762 44763 44764 44765 44766 44767 44768 44769 44770 49560 49561 54120 59880 59881 59882 59883 59884 59885 63660 66420 66421 66422 66423 66424 66425 74400 74401 74402 74403 74404 74405 74406] INFO 2025-06-26 11:32:56,813 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: 0 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 11:32:56,818 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 11:32:56,819 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2006.219.08 ERROR 2025-06-26 11:32:56,819 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2006.219.08 INFO 2025-06-26 11:32:56,827 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2006.219.08/dorado_2006.219.08_cal.nc INFO 2025-06-26 11:32:57,112 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 11:32:57,117 process.py align():251 [1] Alignment steps for 2006.219.08 INFO 2025-06-26 11:32:57,139 align.py process_cal():139 [1] Processing dorado_2006.219.08_cal.nc from /data/auv_data/dorado/missionnetcdfs/2006.219.08 INFO 2025-06-26 11:32:57,146 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:32:57,148 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 11:32:57,161 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:32:57,162 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 11:32:57,174 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:32:57,176 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 11:32:57,183 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 11:32:57,183 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 11:32:57,188 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:32:57,190 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 11:32:57,201 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:32:57,203 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,214 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:32:57,216 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,227 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:32:57,229 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,240 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:32:57,242 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,253 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:32:57,255 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,266 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:32:57,268 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,280 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:32:57,281 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,293 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:32:57,295 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,306 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:32:57,308 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,320 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:32:57,322 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,333 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:32:57,335 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,346 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:32:57,348 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,360 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:32:57,361 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,373 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:32:57,375 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,387 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:32:57,389 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,401 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:32:57,403 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,415 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:32:57,417 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,428 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:32:57,430 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,442 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:32:57,444 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,456 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.219.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:32:57,458 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:32:57,473 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.75 INFO 2025-06-26 11:32:57,487 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.75 INFO 2025-06-26 11:32:57,501 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.75 INFO 2025-06-26 11:32:57,516 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 11:32:57,531 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.96 INFO 2025-06-26 11:32:57,544 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2006.219.08/dorado_2006.219.08_align.nc INFO 2025-06-26 11:32:57,587 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 11:32:57,589 process.py resample():273 [1] Resampling steps for 2006.219.08 INFO 2025-06-26 11:32:57,589 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 11:32:57,610 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2006.219.08/dorado_2006.219.08_align.nc mission netCDF file INFO 2025-06-26 11:32:57,615 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2006.219.08/dorado_2006.219.08_align.nc mission netCDF file INFO 2025-06-26 11:32:57,616 resample.py get_mission_start_end():1145 [1] navigation: 2006-08-07T15:06:08.117513216 to 2006-08-07T15:27:55.697937664 (0 days 00:00:00.099993344 before mission_end) INFO 2025-06-26 11:32:57,617 resample.py get_mission_start_end():1145 [1] hs2 : 2006-08-07T15:05:51.138676480 to 2006-08-07T15:27:55.657940480 (0 days 00:00:00.139990528 before mission_end) INFO 2025-06-26 11:32:57,619 resample.py get_mission_start_end():1145 [1] ctd1 : 2006-08-07T15:06:14.797055488 to 2006-08-07T15:27:55.747934464 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 11:32:57,620 resample.py get_mission_start_end():1145 [1] ctd2 : 2006-08-07T15:06:15.107034368 to 2006-08-07T15:27:55.797931008 (0 days 00:00:00 before mission_end) INFO 2025-06-26 11:32:57,621 resample.py get_mission_start_end():1145 [1] isus : 2006-08-07T15:07:10.653229312 to 2006-08-07T15:27:54.638010368 (0 days 00:00:01.159920640 before mission_end) INFO 2025-06-26 11:32:57,622 resample.py get_mission_start_end():1145 [1] biolume : 2006-08-07T15:05:46.298973440 to 2006-08-07T15:27:54.757967872 (0 days 00:00:01.039963136 before mission_end) INFO 2025-06-26 11:32:57,624 resample.py get_mission_start_end():1145 [1] tailcone : 2006-08-07T15:05:46.169016832 to 2006-08-07T15:27:55.697937664 (0 days 00:00:00.099993344 before mission_end) INFO 2025-06-26 11:32:57,624 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2006.219.08/dorado_2006.219.08_align.nc mission netCDF file INFO 2025-06-26 11:32:57,624 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,667 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,677 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,686 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,695 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,705 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,715 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,724 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,733 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,741 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,749 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,757 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,765 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,773 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,781 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,789 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,797 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,806 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,815 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,824 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,833 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,842 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,851 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,859 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,868 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,877 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,886 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,896 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 11:32:57,996 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2006.219.08/dorado_2006.219.08_1S.nc INFO 2025-06-26 11:32:58,754 create_products.py gulper_odv():401 [1] No gulper times found for 2006.219.08 INFO 2025-06-26 11:32:58,754 process.py archive():337 [1] Archiving steps for 2006.219.08 INFO 2025-06-26 11:32:58,754 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2006.219.08/dorado_2006.219.08, BASE_PATH = /data/auv_data INFO 2025-06-26 11:32:58,754 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2006.219.08/dorado_2006.219.08 files to /Volumes/AUVCTD/surveys/2006/netcdf INFO 2025-06-26 11:32:58,756 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2006/netcdf/dorado_2006.219.08_1S.nc INFO 2025-06-26 11:32:58,763 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.219.08/dorado_2006.219.08_1S.nc /Volumes/AUVCTD/surveys/2006/netcdf done. INFO 2025-06-26 11:32:58,764 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2006/netcdf/dorado_2006.219.08_cal.nc INFO 2025-06-26 11:32:58,775 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.219.08/dorado_2006.219.08_cal.nc /Volumes/AUVCTD/surveys/2006/netcdf done. INFO 2025-06-26 11:32:58,776 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2006/netcdf/dorado_2006.219.08_align.nc INFO 2025-06-26 11:32:58,788 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.219.08/dorado_2006.219.08_align.nc /Volumes/AUVCTD/surveys/2006/netcdf done. INFO 2025-06-26 11:32:58,796 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.219.08/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006219/2006.219.08 done. INFO 2025-06-26 11:32:58,802 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.219.08/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006219/2006.219.08 done. INFO 2025-06-26 11:32:58,806 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.219.08/gps.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006219/2006.219.08 done. INFO 2025-06-26 11:32:58,811 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.219.08/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006219/2006.219.08 done. INFO 2025-06-26 11:32:58,820 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.219.08/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006219/2006.219.08 done. INFO 2025-06-26 11:32:58,824 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.219.08/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006219/2006.219.08 done. INFO 2025-06-26 11:32:58,831 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.219.08/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006219/2006.219.08 done. INFO 2025-06-26 11:32:58,837 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.219.08/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006219/2006.219.08 done. INFO 2025-06-26 11:32:58,847 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.219.08/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006219/2006.219.08 done. INFO 2025-06-26 11:32:58,847 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 11:32:58,847 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.219.08/dorado_2006.219.08_processing.log /Volumes/AUVCTD/surveys/2006/netcdf