INFO 2025-06-26 11:19:47,736 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 11:19:47,736 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Davidson Seamount - John Ryan - ctdToUse = ctd1 INFO 2025-06-26 11:19:47,736 process.py process_mission():449 [1] Processing AUVCTD mission 2006.135.03 by user docker_user on host eae60d30a712 INFO 2025-06-26 11:19:47,736 process.py download_process():165 [1] Download and processing steps for 2006.135.03 INFO 2025-06-26 11:19:47,736 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2006/2006135/2006.135.03 INFO 2025-06-26 11:19:47,736 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2006/2006135/2006.135.03 to /data/auv_data/dorado/missionlogs/2006.135.03 INFO 2025-06-26 11:19:48,741 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2006.135.03 INFO 2025-06-26 11:19:48,741 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.135.03/ctdDriver.log (440043 bytes) INFO 2025-06-26 11:19:48,781 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.135.03/ctdDriver2.log (439949 bytes) INFO 2025-06-26 11:19:48,817 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.135.03/gps.log (10652 bytes) INFO 2025-06-26 11:19:48,826 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.135.03/hydroscatlog.log (313814 bytes) INFO 2025-06-26 11:19:48,870 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.135.03/navigation.log (1518786 bytes) INFO 2025-06-26 11:19:48,987 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.135.03/isuslog.log (26549 bytes) INFO 2025-06-26 11:19:48,994 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.135.03/parosci.log (672950 bytes) INFO 2025-06-26 11:19:49,053 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2006.135.03/parosci.log: [9233 9234] INFO 2025-06-26 11:19:49,055 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.135.03/tailCone.log (314395 bytes) INFO 2025-06-26 11:19:49,102 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.135.03/biolume.log (358908 bytes) INFO 2025-06-26 11:19:49,139 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 11:19:49,160 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.42 seconds WARNING 2025-06-26 11:19:49,160 process.py download_process():196 [1] No lopc.bin file for 2006.135.03 INFO 2025-06-26 11:19:49,160 process.py calibrate():227 [1] Calibration steps for 2006.135.03 INFO 2025-06-26 11:19:49,223 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 11:19:49,225 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 11:19:49,884 calibrate.py _nudge_pos():1806 [1] 88: 0.130 -0.0000676 -0.0006839 5869 19.58 -0.516 -6.472 2006-05-15T20:47:41.206146048 INFO 2025-06-26 11:19:50,331 calibrate.py _nudge_pos():1862 [1] 114: - - - 1 0.00 - - INFO 2025-06-26 11:19:50,331 calibrate.py _nudge_pos():1868 [1] Points in final series = 6427 WARNING 2025-06-26 11:19:50,562 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 11:19:50,627 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:19:50,698 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 60 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:19:50,739 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 60 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:19:50,741 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2006.135.03/ctd1.nc INFO 2025-06-26 11:19:50,742 calibrate.py _range_qc_combined_nc():898 [1] Setting 3 ctd1_salinity values to NaN INFO 2025-06-26 11:19:50,742 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:19:50,742 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 11:19:50,801 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 60 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 11:19:50,842 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 60 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 11:19:50,843 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2006.135.03/ctd2.nc INFO 2025-06-26 11:19:50,844 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 11:19:50,845 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:19:50,845 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 11:19:50,852 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 11:19:50,923 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 11:19:50,928 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 11:19:50,928 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2006.135.03 ERROR 2025-06-26 11:19:50,928 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2006.135.03 INFO 2025-06-26 11:19:50,936 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2006.135.03/dorado_2006.135.03_cal.nc INFO 2025-06-26 11:19:50,981 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 11:19:50,985 process.py align():251 [1] Alignment steps for 2006.135.03 INFO 2025-06-26 11:19:51,008 align.py process_cal():139 [1] Processing dorado_2006.135.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2006.135.03 INFO 2025-06-26 11:19:51,014 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:19:51,016 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:19:51,030 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:19:51,031 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:19:51,043 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:19:51,045 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:19:51,052 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 11:19:51,052 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 11:19:51,057 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:19:51,058 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:19:51,070 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:19:51,072 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,084 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:19:51,087 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,106 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:19:51,108 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,120 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:19:51,122 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,133 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:19:51,135 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,146 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:19:51,148 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,159 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:19:51,161 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,173 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:19:51,175 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,186 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:19:51,188 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,200 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:19:51,202 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,213 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:19:51,215 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,227 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:19:51,229 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,241 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:19:51,242 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,254 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:19:51,256 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,269 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:19:51,271 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,284 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:19:51,286 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,298 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:19:51,300 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,312 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:19:51,314 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,327 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:19:51,329 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,341 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.135.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:19:51,343 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:19:51,360 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 11:19:51,375 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 11:19:51,389 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 11:19:51,404 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 11:19:51,419 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:19:51,432 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2006.135.03/dorado_2006.135.03_align.nc INFO 2025-06-26 11:19:51,475 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 11:19:51,477 process.py resample():273 [1] Resampling steps for 2006.135.03 INFO 2025-06-26 11:19:51,478 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 11:19:51,499 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2006.135.03/dorado_2006.135.03_align.nc mission netCDF file INFO 2025-06-26 11:19:51,503 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2006.135.03/dorado_2006.135.03_align.nc mission netCDF file INFO 2025-06-26 11:19:51,505 resample.py get_mission_start_end():1145 [1] navigation: 2006-05-15T20:27:02.021036160 to 2006-05-15T20:48:28.402912896 (0 days 00:00:00 before mission_end) INFO 2025-06-26 11:19:51,506 resample.py get_mission_start_end():1145 [1] hs2 : 2006-05-15T20:26:44.342247296 to 2006-05-15T20:48:28.352916224 (0 days 00:00:00.049996672 before mission_end) INFO 2025-06-26 11:19:51,507 resample.py get_mission_start_end():1145 [1] ctd1 : 2006-05-15T20:27:40.348410368 to 2006-05-15T20:48:28.272921856 (0 days 00:00:00.129991040 before mission_end) INFO 2025-06-26 11:19:51,509 resample.py get_mission_start_end():1145 [1] ctd2 : 2006-05-15T20:27:40.698386432 to 2006-05-15T20:48:28.402912896 (0 days 00:00:00 before mission_end) INFO 2025-06-26 11:19:51,510 resample.py get_mission_start_end():1145 [1] isus : 2006-05-15T20:28:07.866525440 to 2006-05-15T20:48:27.332986112 (0 days 00:00:01.069926784 before mission_end) INFO 2025-06-26 11:19:51,511 resample.py get_mission_start_end():1145 [1] biolume : 2006-05-15T20:26:39.482545792 to 2006-05-15T20:48:27.342951296 (0 days 00:00:01.059961600 before mission_end) INFO 2025-06-26 11:19:51,513 resample.py get_mission_start_end():1145 [1] tailcone : 2006-05-15T20:26:39.932549248 to 2006-05-15T20:48:28.302919680 (0 days 00:00:00.099993216 before mission_end) INFO 2025-06-26 11:19:51,513 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2006.135.03/dorado_2006.135.03_align.nc mission netCDF file INFO 2025-06-26 11:19:51,514 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,554 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,564 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,574 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,584 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,594 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,603 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,613 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,622 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,630 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,639 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,647 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,655 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,664 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,672 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,680 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,689 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,698 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,708 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,717 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,727 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,736 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,745 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,754 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,762 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,771 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,779 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,790 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 11:19:51,887 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2006.135.03/dorado_2006.135.03_1S.nc INFO 2025-06-26 11:19:52,569 create_products.py gulper_odv():401 [1] No gulper times found for 2006.135.03 INFO 2025-06-26 11:19:52,569 process.py archive():337 [1] Archiving steps for 2006.135.03 INFO 2025-06-26 11:19:52,569 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2006.135.03/dorado_2006.135.03, BASE_PATH = /data/auv_data INFO 2025-06-26 11:19:52,569 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2006.135.03/dorado_2006.135.03 files to /Volumes/AUVCTD/surveys/2006/netcdf INFO 2025-06-26 11:19:52,571 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2006/netcdf/dorado_2006.135.03_1S.nc INFO 2025-06-26 11:19:52,579 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.135.03/dorado_2006.135.03_1S.nc /Volumes/AUVCTD/surveys/2006/netcdf done. INFO 2025-06-26 11:19:52,579 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2006/netcdf/dorado_2006.135.03_cal.nc INFO 2025-06-26 11:19:52,592 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.135.03/dorado_2006.135.03_cal.nc /Volumes/AUVCTD/surveys/2006/netcdf done. INFO 2025-06-26 11:19:52,592 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2006/netcdf/dorado_2006.135.03_align.nc INFO 2025-06-26 11:19:52,604 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.135.03/dorado_2006.135.03_align.nc /Volumes/AUVCTD/surveys/2006/netcdf done. INFO 2025-06-26 11:19:52,612 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.135.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006135/2006.135.03 done. INFO 2025-06-26 11:19:52,618 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.135.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006135/2006.135.03 done. INFO 2025-06-26 11:19:52,621 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.135.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006135/2006.135.03 done. INFO 2025-06-26 11:19:52,626 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.135.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006135/2006.135.03 done. INFO 2025-06-26 11:19:52,635 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.135.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006135/2006.135.03 done. INFO 2025-06-26 11:19:52,639 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.135.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006135/2006.135.03 done. INFO 2025-06-26 11:19:52,646 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.135.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006135/2006.135.03 done. INFO 2025-06-26 11:19:52,652 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.135.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006135/2006.135.03 done. INFO 2025-06-26 11:19:52,660 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.135.03/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006135/2006.135.03 done. INFO 2025-06-26 11:19:52,660 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 11:19:52,660 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.135.03/dorado_2006.135.03_processing.log /Volumes/AUVCTD/surveys/2006/netcdf