INFO 2025-06-26 11:07:10,572 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 11:07:10,572 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portal executed from Eclipse to get through ingest/ruminate - multiple Ruminate proble - ctdToUse = ctd1 INFO 2025-06-26 11:07:10,572 process.py process_mission():449 [1] Processing AUVCTD mission 2006.052.06 by user docker_user on host eae60d30a712 INFO 2025-06-26 11:07:10,572 process.py download_process():165 [1] Download and processing steps for 2006.052.06 INFO 2025-06-26 11:07:10,572 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2006/2006052/2006.052.06 INFO 2025-06-26 11:07:10,572 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2006/2006052/2006.052.06 to /data/auv_data/dorado/missionlogs/2006.052.06 INFO 2025-06-26 11:07:11,917 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2006.052.06 INFO 2025-06-26 11:07:11,917 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.052.06/ctdDriver.log (1845667 bytes) INFO 2025-06-26 11:07:12,059 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.052.06/ctdDriver2.log (1845573 bytes) INFO 2025-06-26 11:07:12,200 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.052.06/gps.log (25988 bytes) INFO 2025-06-26 11:07:12,211 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.052.06/hydroscatlog.log (0 bytes) WARNING 2025-06-26 11:07:12,211 logs2netcdfs.py download_process_logs():790 [1] /data/auv_data/dorado/missionlogs/2006.052.06/hydroscatlog.log is empty INFO 2025-06-26 11:07:12,211 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.052.06/navigation.log (6193238 bytes) INFO 2025-06-26 11:07:12,652 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.052.06/isuslog.log (10869 bytes) INFO 2025-06-26 11:07:12,658 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.052.06/parosci.log (2709398 bytes) INFO 2025-06-26 11:07:12,882 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.052.06/tailCone.log (1264315 bytes) INFO 2025-06-26 11:07:13,041 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2006.052.06/biolume.log (1436300 bytes) INFO 2025-06-26 11:07:13,178 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 11:07:13,256 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.34 seconds WARNING 2025-06-26 11:07:13,256 process.py download_process():196 [1] No lopc.bin file for 2006.052.06 INFO 2025-06-26 11:07:13,256 process.py calibrate():227 [1] Calibration steps for 2006.052.06 INFO 2025-06-26 11:07:13,338 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 11:07:13,340 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 11:07:14,878 calibrate.py _nudge_pos():1806 [1] 181: 0.010 -0.0006423 0.0016406 5450 18.16 -5.249 16.738 2006-02-21T21:34:54.324899456 INFO 2025-06-26 11:07:15,437 calibrate.py _nudge_pos():1806 [1] 239: 0.190 0.0049130 0.0004074 12104 40.34 18.076 1.871 2006-02-21T22:16:12.125158528 INFO 2025-06-26 11:07:16,123 calibrate.py _nudge_pos():1806 [1] 310: 0.200 0.0036833 -0.0001720 7060 23.53 23.234 -1.354 2006-02-21T22:40:54.123634560 INFO 2025-06-26 11:07:16,495 calibrate.py _nudge_pos():1862 [1] 327: - - - 4 0.01 - - INFO 2025-06-26 11:07:16,495 calibrate.py _nudge_pos():1868 [1] Points in final series = 26097 WARNING 2025-06-26 11:07:16,544 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 11:07:16,769 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:07:16,931 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:07:16,933 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2006.052.06/ctd1.nc INFO 2025-06-26 11:07:16,934 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 11:07:16,934 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:07:16,934 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 11:07:17,141 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:07:17,310 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:07:17,312 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2006.052.06/ctd2.nc INFO 2025-06-26 11:07:17,313 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 11:07:17,314 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:07:17,314 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 11:07:17,324 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 11:07:17,624 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [60 61 62 63] INFO 2025-06-26 11:07:17,675 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 11:07:17,680 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 11:07:17,681 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2006.052.06 ERROR 2025-06-26 11:07:17,681 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2006.052.06 INFO 2025-06-26 11:07:17,704 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2006.052.06/dorado_2006.052.06_cal.nc INFO 2025-06-26 11:07:17,763 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 11:07:17,767 process.py align():251 [1] Alignment steps for 2006.052.06 INFO 2025-06-26 11:07:17,788 align.py process_cal():139 [1] Processing dorado_2006.052.06_cal.nc from /data/auv_data/dorado/missionnetcdfs/2006.052.06 INFO 2025-06-26 11:07:17,800 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:07:17,802 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:07:17,828 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:07:17,830 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:07:17,855 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:07:17,857 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:07:17,872 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 11:07:17,872 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 11:07:17,882 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:07:17,885 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:07:17,909 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.052.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:07:17,911 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:07:17,933 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.052.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:07:17,936 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:07:17,958 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.052.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:07:17,961 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:07:17,983 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.052.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:07:17,985 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:07:18,009 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.052.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:07:18,012 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:07:18,035 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.052.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:07:18,037 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:07:18,060 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.052.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:07:18,063 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:07:18,085 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.052.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:07:18,087 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:07:18,109 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.052.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:07:18,111 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:07:18,133 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2006.052.06_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:07:18,135 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:07:18,158 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.052.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:07:18,161 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:07:18,183 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.052.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:07:18,186 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:07:18,208 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.052.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:07:18,211 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:07:18,232 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.052.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:07:18,235 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:07:18,257 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.052.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:07:18,259 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:07:18,281 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.052.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:07:18,283 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:07:18,307 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2006.052.06_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:07:18,309 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:07:18,337 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.06 INFO 2025-06-26 11:07:18,358 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.06 INFO 2025-06-26 11:07:18,379 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.06 INFO 2025-06-26 11:07:18,401 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 11:07:18,426 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:07:18,446 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2006.052.06/dorado_2006.052.06_align.nc INFO 2025-06-26 11:07:18,491 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 11:07:18,493 process.py resample():273 [1] Resampling steps for 2006.052.06 INFO 2025-06-26 11:07:18,494 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 11:07:18,514 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2006.052.06/dorado_2006.052.06_align.nc mission netCDF file INFO 2025-06-26 11:07:18,518 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2006.052.06/dorado_2006.052.06_align.nc mission netCDF file INFO 2025-06-26 11:07:18,519 resample.py get_mission_start_end():1145 [1] navigation: 2006-02-21T21:14:06.540378624 to 2006-02-21T22:41:33.130962432 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 11:07:18,520 resample.py get_mission_start_end():1145 [1] ctd1 : 2006-02-21T21:14:12.050001152 to 2006-02-21T22:41:33.160960384 (0 days 00:00:00.079994496 before mission_end) INFO 2025-06-26 11:07:18,522 resample.py get_mission_start_end():1145 [1] ctd2 : 2006-02-21T21:14:12.199990784 to 2006-02-21T22:41:33.060967168 (0 days 00:00:00.179987712 before mission_end) INFO 2025-06-26 11:07:18,523 resample.py get_mission_start_end():1145 [1] isus : 2006-02-21T21:15:27.064862208 to 2006-02-21T22:41:19.661885056 (0 days 00:00:13.579069824 before mission_end) INFO 2025-06-26 11:07:18,524 resample.py get_mission_start_end():1145 [1] biolume : 2006-02-21T21:13:43.691909504 to 2006-02-21T22:41:32.051001984 (0 days 00:00:01.189952896 before mission_end) INFO 2025-06-26 11:07:18,526 resample.py get_mission_start_end():1145 [1] tailcone : 2006-02-21T21:13:47.051713408 to 2006-02-21T22:41:33.240954880 (0 days 00:00:00 before mission_end) INFO 2025-06-26 11:07:18,526 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2006.052.06/dorado_2006.052.06_align.nc mission netCDF file INFO 2025-06-26 11:07:18,527 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,607 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,622 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,638 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,653 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,667 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,680 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,693 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,706 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,719 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,731 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,744 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,757 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,770 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,785 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,799 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,813 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,827 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,842 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,855 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,864 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,873 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,881 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,891 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:18,907 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 11:07:19,027 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2006.052.06/dorado_2006.052.06_1S.nc INFO 2025-06-26 11:07:20,230 create_products.py gulper_odv():401 [1] No gulper times found for 2006.052.06 INFO 2025-06-26 11:07:20,231 process.py archive():337 [1] Archiving steps for 2006.052.06 INFO 2025-06-26 11:07:20,231 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2006.052.06/dorado_2006.052.06, BASE_PATH = /data/auv_data INFO 2025-06-26 11:07:20,231 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2006.052.06/dorado_2006.052.06 files to /Volumes/AUVCTD/surveys/2006/netcdf INFO 2025-06-26 11:07:20,233 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2006/netcdf/dorado_2006.052.06_1S.nc INFO 2025-06-26 11:07:20,244 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.052.06/dorado_2006.052.06_1S.nc /Volumes/AUVCTD/surveys/2006/netcdf done. INFO 2025-06-26 11:07:20,245 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2006/netcdf/dorado_2006.052.06_cal.nc INFO 2025-06-26 11:07:20,270 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.052.06/dorado_2006.052.06_cal.nc /Volumes/AUVCTD/surveys/2006/netcdf done. INFO 2025-06-26 11:07:20,271 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2006/netcdf/dorado_2006.052.06_align.nc INFO 2025-06-26 11:07:20,295 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.052.06/dorado_2006.052.06_align.nc /Volumes/AUVCTD/surveys/2006/netcdf done. INFO 2025-06-26 11:07:20,307 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.052.06/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006052/2006.052.06 done. INFO 2025-06-26 11:07:20,318 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.052.06/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006052/2006.052.06 done. INFO 2025-06-26 11:07:20,322 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.052.06/gps.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006052/2006.052.06 done. INFO 2025-06-26 11:07:20,343 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.052.06/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006052/2006.052.06 done. INFO 2025-06-26 11:07:20,347 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.052.06/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006052/2006.052.06 done. INFO 2025-06-26 11:07:20,359 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.052.06/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006052/2006.052.06 done. INFO 2025-06-26 11:07:20,368 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.052.06/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006052/2006.052.06 done. INFO 2025-06-26 11:07:20,385 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.052.06/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2006/2006052/2006.052.06 done. INFO 2025-06-26 11:07:20,385 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 11:07:20,385 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2006.052.06/dorado_2006.052.06_processing.log /Volumes/AUVCTD/surveys/2006/netcdf