sfcctdStream2netcdf.pl Run begun at Mon Jul 5 16:26:28 2004 on host mammoth by mccann Executing getSIAM_sfcctd.pl 1314 1299 ssds.shore.mbari.org 408 /tmp/outputFiles/m0/sfcctd/2004 | tee -a /u/mccann/dev/DPforSSDS/sfcctd/logs/m0_sfcctd_20040603_sfcctd_hourly.log Executing /mbari/matlab/bin/matlab < sfcctd_mooring.m | tee -a /u/mccann/dev/DPforSSDS/sfcctd/logs/m0_sfcctd_20040603_sfcctd_hourly.log 2>&1 Copying /tmp/outputFiles/m0/sfcctd/2004/m0_sfcctd_uv_jul_2004.mat to /u/mccann/dev/DPforSSDS/sfcctd/outputFiles/m0/sfcctd/2004 Executing /mbari/matlab/bin/matlab < nohandssfcctd.m | tee -a /u/mccann/dev/DPforSSDS/sfcctd/logs/m0_sfcctd_20040603_sfcctd_hourly.log Copying /tmp/outputFiles/ncFiles/m0_sfcctd_20040603_sfcctd_hourly.nc to /u/mccann/dev/DPforSSDS/sfcctd/ncFiles Copying ncFiles/m0_sfcctd_20040603_sfcctd_hourly.nc to /ssdsdata/mooring/m0/sfcctd/netcdf Copying /tmp/outputFiles/m0_uvplot.png to /ssdsdata/mooring/m0/sfcctd/plots Copying /tmp/outputFiles/m0_uvprof.png to /ssdsdata/mooring/m0/sfcctd/plots Executing /usr/java/j2sdk1.4.2_04/bin/java -jar ../ssdsLoads-polyp.jar -i xml/inputDS.xml -u xml/sfcctdM0pr.xml -o xml/outputNC.txt -x | tee -a /u/mccann/dev/DPforSSDS/sfcctd/logs/m0_sfcctd_20040603_sfcctd_hourly.log Executing /usr/java/j2sdk1.4.2_04/bin/java -jar ../ssdsLoads-polyp.jar -i xml/inputDS.xml -u xml/sfcctdM0pr.xml -o xml/outputNC.txt -s | tee -a /u/mccann/dev/DPforSSDS/sfcctd/logs/m0_sfcctd_20040603_sfcctd_hourly.log Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] < M A T L A B > Copyright 1984-2003 The MathWorks, Inc. Version 6.5.1.199709 Release 13 (Service Pack 1) Aug 4 2003 Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf. Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf/bin. Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf/ncfiles. Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf/nctype. Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf/ncutility. Warning: Name is nonexistent or not a directory: /usr/local/DODS/bin. Warning: Name is nonexistent or not a directory: /mbari/local/DODS/bin/matlab-gui. Using Toolbox Path Cache. Type "help toolbox_path_cache" for more info. Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf. Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf/bin. Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf/ncfiles. Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf/nctype. Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf/ncutility. Warning: Name is nonexistent or not a directory: /usr/local/DODS/bin. Warning: Name is nonexistent or not a directory: /mbari/local/DODS/bin/matlab-gui. To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] Font specified in font.properties not found [-*-standard symbols l-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] < M A T L A B > Copyright 1984-2003 The MathWorks, Inc. Version 6.5.1.199709 Release 13 (Service Pack 1) Aug 4 2003 Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf. Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf/bin. Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf/ncfiles. Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf/nctype. Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf/ncutility. Warning: Name is nonexistent or not a directory: /usr/local/DODS/bin. Warning: Name is nonexistent or not a directory: /mbari/local/DODS/bin/matlab-gui. Using Toolbox Path Cache. Type "help toolbox_path_cache" for more info. Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf. Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf/bin. Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf/ncfiles. Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf/nctype. Warning: Name is nonexistent or not a directory: /hosts/tornado/vol/vol0/IAG/libraries/matlab/netcdf/ncutility. Warning: Name is nonexistent or not a directory: /usr/local/DODS/bin. Warning: Name is nonexistent or not a directory: /mbari/local/DODS/bin/matlab-gui. To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> load /tmp/outputFiles/m0/sfcctd/2004/m0_sfcctd_jun_2004; load /tmp/outputFiles/m0/sfcctd/2004/m0_sfcctd_jul_2004; >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> Warning: File: /data/AOSNII/software/netcdfmatlab/netcdflinux/netcdf/@ncvar/subsasgn.m Line: 118 Column: 9 Variable 'subs' has been previously used as a function name. (Type "warning off MATLAB:mir_warning_variable_used_as_function" to suppress this warning.) > In /data/AOSNII/software/netcdfmatlab/netcdflinux/netcdf/@netcdf/subsasgn.m at line 83 >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> 0 [main] INFO moos.ssds.model.ObjectBuilder - NoSuchMethodException: problem with ProcessRun: trying to find method setSoftware(class moos.ssds.model.Software) 2 [main] INFO moos.ssds.model.ObjectBuilder - Will try to see if we can find a method that has and interface parameter 11 [main] INFO moos.ssds.model.ObjectBuilder - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource) 11 [main] INFO moos.ssds.model.ObjectBuilder - Will try with an interface before giving up ... 12 [main] INFO moos.ssds.model.ObjectBuilder - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource) 13 [main] INFO moos.ssds.model.ObjectBuilder - Will try with an interface before giving up ... 14 [main] INFO moos.ssds.model.ObjectBuilder - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource) 14 [main] INFO moos.ssds.model.ObjectBuilder - Will try with an interface before giving up ... 18 [main] INFO moos.ssds.model.ObjectBuilder - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource) 19 [main] INFO moos.ssds.model.ObjectBuilder - Will try with an interface before giving up ... 20 [main] INFO moos.ssds.model.ObjectBuilder - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource) 20 [main] INFO moos.ssds.model.ObjectBuilder - Will try with an interface before giving up ... 22 [main] INFO moos.ssds.model.ObjectBuilder - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource) 22 [main] INFO moos.ssds.model.ObjectBuilder - Will try with an interface before giving up ... 209 [main] ERROR moos.ssds - Failed to get DODS URL: http://ssds.shore.mbari.org/cgi-bin/nph-dods/ssdsdata/mooring/m0/sfcctd/netcdf/m0_sfcctd_20040603_sfcctd_hourly.nc 209 [main] ERROR moos.ssds - opendap.dap.DODSException: "Could not open m0_sfcctd_20040603_sfcctd_hourly.nc." 0 [main] INFO moos.ssds.model.ObjectBuilder - NoSuchMethodException: problem with ProcessRun: trying to find method setSoftware(class moos.ssds.model.Software) 2 [main] INFO moos.ssds.model.ObjectBuilder - Will try to see if we can find a method that has and interface parameter 12 [main] INFO moos.ssds.model.ObjectBuilder - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource) 12 [main] INFO moos.ssds.model.ObjectBuilder - Will try with an interface before giving up ... 14 [main] INFO moos.ssds.model.ObjectBuilder - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource) 14 [main] INFO moos.ssds.model.ObjectBuilder - Will try with an interface before giving up ... 15 [main] INFO moos.ssds.model.ObjectBuilder - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource) 15 [main] INFO moos.ssds.model.ObjectBuilder - Will try with an interface before giving up ... 21 [main] INFO moos.ssds.model.ObjectBuilder - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource) 21 [main] INFO moos.ssds.model.ObjectBuilder - Will try with an interface before giving up ... 22 [main] INFO moos.ssds.model.ObjectBuilder - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource) 22 [main] INFO moos.ssds.model.ObjectBuilder - Will try with an interface before giving up ... 25 [main] INFO moos.ssds.model.ObjectBuilder - Unable to add the child object to the parent object: moos.ssds.model.ProcessRun.addResource(moos.ssds.model.Resource) 25 [main] INFO moos.ssds.model.ObjectBuilder - Will try with an interface before giving up ... 208 [main] ERROR moos.ssds - Failed to get DODS URL: http://ssds.shore.mbari.org/cgi-bin/nph-dods/ssdsdata/mooring/m0/sfcctd/netcdf/m0_sfcctd_20040603_sfcctd_hourly.nc 209 [main] ERROR moos.ssds - opendap.dap.DODSException: "Could not open m0_sfcctd_20040603_sfcctd_hourly.nc."