INFO 2024-04-09 22:29:56,294Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T141331/201907171413_201907171533.nc4 file...
INFO 2024-04-09 22:29:56,295Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/201907171413_201907171533.nc4
INFO 2024-04-09 22:29:56,734Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T141331/201907171413_201907171533.nc4
INFO 2024-04-09 22:29:56,763Z lrauvNc4ToNetcdf.py createSeries():299 latitude :  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:56,827Z lrauvNc4ToNetcdf.py createSeries():299 longitude:  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:56,894Z lrauvNc4ToNetcdf.py createSeries():299 depth    :  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:56,959Z lrauvNc4ToNetcdf.py createSeries():299 time     :  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,021Z lrauvNc4ToNetcdf.py createSeries():299 latitude :  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,083Z lrauvNc4ToNetcdf.py createSeries():299 longitude:  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,145Z lrauvNc4ToNetcdf.py createSeries():299 depth    :  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,207Z lrauvNc4ToNetcdf.py createSeries():299 time     :  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,269Z lrauvNc4ToNetcdf.py createSeries():299 latitude :  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,334Z lrauvNc4ToNetcdf.py createSeries():299 longitude:  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,398Z lrauvNc4ToNetcdf.py createSeries():299 depth    :  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,461Z lrauvNc4ToNetcdf.py createSeries():299 time     :  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,524Z lrauvNc4ToNetcdf.py createSeries():299 latitude :  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,586Z lrauvNc4ToNetcdf.py createSeries():299 longitude:  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,648Z lrauvNc4ToNetcdf.py createSeries():299 depth    :  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,712Z lrauvNc4ToNetcdf.py createSeries():299 time     :  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,757Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes
INFO 2024-04-09 22:29:57,766Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2024-04-09 22:29:57,768Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable sea_water_salinity empty so skipping
INFO 2024-04-09 22:29:57,769Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable sea_water_temperature empty so skipping
INFO 2024-04-09 22:29:57,771Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_mean_sea_water_salinity empty so skipping
INFO 2024-04-09 22:29:57,772Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_median_sea_water_salinity empty so skipping
INFO 2024-04-09 22:29:57,774Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_mean_sea_water_temperature empty so skipping
INFO 2024-04-09 22:29:57,776Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_median_sea_water_temperature empty so skipping
INFO 2024-04-09 22:29:57,780Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2024-04-09 22:29:57,784Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2024-04-09 22:29:57,786Z lrauvNc4ToNetcdf.py createSeries():299 time_fix :    1 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,789Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2024-04-09 22:29:57,791Z lrauvNc4ToNetcdf.py createSeries():299 latitude_fix:    1 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,794Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2024-04-09 22:29:57,795Z lrauvNc4ToNetcdf.py createSeries():299 longitude_fix:    1 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,799Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2024-04-09 22:29:57,806Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2024-04-09 22:29:57,822Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2024-04-09 22:29:57,826Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2024-04-09 22:29:57,830Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2024-04-09 22:29:57,831Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable BackscatteringCoeff700nm empty so skipping
INFO 2024-04-09 22:29:57,835Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2024-04-09 22:29:57,838Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2024-04-09 22:29:57,841Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 22:29:57,844Z lrauvNc4ToNetcdf.py createSeries():299 longitude:  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,860Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 22:29:57,863Z lrauvNc4ToNetcdf.py createSeries():299 latitude :  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,878Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 22:29:57,881Z lrauvNc4ToNetcdf.py createSeries():299 depth    :  101 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,897Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 22:29:57,907Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2024-04-09 22:29:57,916Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2024-04-09 22:29:57,943Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle:   98 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:57,993Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:29:58,015Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle:   98 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:58,066Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:29:58,088Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation:   98 v_t values found before 2019-07-17 14:13:00 and after 2019-07-17 15:33:00
INFO 2024-04-09 22:29:58,139Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:29:58,140Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T141331/201907171413_201907171533.nc4
INFO 2024-04-09 22:29:58,250Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 11599 vehicle dead reckoned longitude and latitude values
INFO 2024-04-09 22:29:58,347Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 6 longitude_fix and latititude_fix values from /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T141331/201907171413_201907171533.nc4
INFO 2024-04-09 22:29:58,347Z lrauvNc4ToNetcdf.py nudge_coords():786 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2024-04-09 22:29:58,348Z lrauvNc4ToNetcdf.py nudge_coords():807                  -            -            -         0      0.00              -              -                             -
INFO 2024-04-09 22:29:58,349Z lrauvNc4ToNetcdf.py nudge_coords():840    0:        0.395    0.0000686    0.0000031       189      1.27           0.29           0.45 2019-07-17 14:16:49.900132895
INFO 2024-04-09 22:29:58,352Z lrauvNc4ToNetcdf.py nudge_coords():840    1:        0.392    0.0000682    0.0000597       641      4.31           1.62           2.57 2019-07-17 14:21:09.095206976
INFO 2024-04-09 22:29:58,354Z lrauvNc4ToNetcdf.py nudge_coords():840    2:        0.304   -0.0000046    0.0000008        87      0.58           0.16           0.25 2019-07-17 14:21:44.401202917
INFO 2024-04-09 22:29:58,357Z lrauvNc4ToNetcdf.py nudge_coords():840    3:        0.368    0.0002106   -0.0010597      9834     66.22          -1.87          -2.97 2019-07-17 15:27:58.035289049
INFO 2024-04-09 22:29:58,361Z lrauvNc4ToNetcdf.py nudge_coords():840    4:        0.219    0.0001185   -0.0000554       800      5.38          -1.20          -1.91 2019-07-17 15:33:21.449888945
INFO 2024-04-09 22:29:58,364Z lrauvNc4ToNetcdf.py nudge_coords():871    6:            -            -            -        47      0.31              -              -
INFO 2024-04-09 22:29:58,365Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 11598
INFO 2024-04-09 22:29:58,386Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190717T131342/20190717T163340/data.csv
INFO 2024-04-09 22:29:58,484Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database
INFO 2024-04-09 22:29:58,490Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2024-04-09 22:29:58,751Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S'
INFO 2024-04-09 22:29:58,908Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T141331/201907171413_201907171533_2S_scieng.nc