INFO 2024-04-09 22:29:45,336Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4 file... INFO 2024-04-09 22:29:45,336Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/201907170015_201907170407.nc4 INFO 2024-04-09 22:29:47,796Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4 INFO 2024-04-09 22:29:47,828Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 5 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:47,900Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 5 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:47,970Z lrauvNc4ToNetcdf.py createSeries():299 depth : 6 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:48,042Z lrauvNc4ToNetcdf.py createSeries():299 time : 6 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:48,110Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 5 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:48,176Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 5 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:48,241Z lrauvNc4ToNetcdf.py createSeries():299 depth : 6 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:48,308Z lrauvNc4ToNetcdf.py createSeries():299 time : 6 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:48,373Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 5 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:48,438Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 5 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:48,503Z lrauvNc4ToNetcdf.py createSeries():299 depth : 6 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:48,568Z lrauvNc4ToNetcdf.py createSeries():299 time : 6 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:48,633Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 5 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:48,697Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 5 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:48,761Z lrauvNc4ToNetcdf.py createSeries():299 depth : 6 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:48,826Z lrauvNc4ToNetcdf.py createSeries():299 time : 6 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:48,874Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes INFO 2024-04-09 22:29:48,890Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2024-04-09 22:29:48,905Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity INFO 2024-04-09 22:29:48,919Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature INFO 2024-04-09 22:29:48,921Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_mean_sea_water_salinity empty so skipping INFO 2024-04-09 22:29:48,922Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_median_sea_water_salinity empty so skipping INFO 2024-04-09 22:29:48,924Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_mean_sea_water_temperature empty so skipping INFO 2024-04-09 22:29:48,926Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_median_sea_water_temperature empty so skipping INFO 2024-04-09 22:29:48,934Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle INFO 2024-04-09 22:29:48,936Z lrauvNc4ToNetcdf.py createSeries():299 platform_mass_position: 5 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:48,940Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2024-04-09 22:29:48,944Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2024-04-09 22:29:48,949Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2024-04-09 22:29:48,953Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude INFO 2024-04-09 22:29:48,966Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2024-04-09 22:29:48,997Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate INFO 2024-04-09 22:29:49,004Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2024-04-09 22:29:49,011Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2024-04-09 22:29:49,013Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable BackscatteringCoeff700nm empty so skipping INFO 2024-04-09 22:29:49,020Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2024-04-09 22:29:49,027Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2024-04-09 22:29:49,031Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 22:29:49,036Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 5 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:49,071Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 22:29:49,077Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 5 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:49,111Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 22:29:49,117Z lrauvNc4ToNetcdf.py createSeries():299 depth : 5 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:49,151Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 22:29:49,162Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2024-04-09 22:29:49,171Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage INFO 2024-04-09 22:29:49,199Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle: 5 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:49,262Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 22:29:49,288Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle: 5 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:49,350Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 22:29:49,376Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation: 5 v_t values found before 2019-07-17 00:15:00 and after 2019-07-17 04:07:00 INFO 2024-04-09 22:29:49,439Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 22:29:49,440Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4 INFO 2024-04-09 22:29:49,579Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 34289 vehicle dead reckoned longitude and latitude values INFO 2024-04-09 22:29:49,665Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 25 longitude_fix and latititude_fix values from /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4 INFO 2024-04-09 22:29:49,666Z lrauvNc4ToNetcdf.py nudge_coords():786 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2024-04-09 22:29:49,667Z lrauvNc4ToNetcdf.py nudge_coords():807 - - - 809 5.44 - - - INFO 2024-04-09 22:29:49,668Z lrauvNc4ToNetcdf.py nudge_coords():840 0: 0.363 -0.0000150 0.0000031 88 0.71 0.51 0.81 2019-07-17 00:22:00.575352907 INFO 2024-04-09 22:29:49,671Z lrauvNc4ToNetcdf.py nudge_coords():840 1: 0.344 -0.0000071 0.0000069 147 0.98 0.81 1.29 2019-07-17 00:22:59.986906052 INFO 2024-04-09 22:29:49,673Z lrauvNc4ToNetcdf.py nudge_coords():840 2: 0.356 0.0026364 -0.0011806 4987 33.60 -4.09 -6.51 2019-07-17 00:56:36.308752060 INFO 2024-04-09 22:29:49,676Z lrauvNc4ToNetcdf.py nudge_coords():840 3: 0.363 -0.0001484 0.0000697 317 2.13 3.81 6.06 2019-07-17 00:58:44.385723114 INFO 2024-04-09 22:29:49,679Z lrauvNc4ToNetcdf.py nudge_coords():840 4: 0.367 0.0000561 -0.0000384 84 0.56 -8.01 -12.73 2019-07-17 00:59:18.301265001 INFO 2024-04-09 22:29:49,682Z lrauvNc4ToNetcdf.py nudge_coords():840 5: 0.377 0.0000489 0.0001477 797 5.36 3.21 5.10 2019-07-17 01:04:40.527112007 INFO 2024-04-09 22:29:49,685Z lrauvNc4ToNetcdf.py nudge_coords():840 6: 0.351 0.0000491 0.0000317 732 4.92 0.75 1.19 2019-07-17 01:09:36.337620974 INFO 2024-04-09 22:29:49,688Z lrauvNc4ToNetcdf.py nudge_coords():840 7: 0.378 -0.0000091 0.0000085 93 0.62 1.60 2.54 2019-07-17 01:10:13.965384007 INFO 2024-04-09 22:29:49,690Z lrauvNc4ToNetcdf.py nudge_coords():840 8: 0.369 0.0020139 -0.0021583 4937 33.27 -7.56 -12.02 2019-07-17 01:43:30.327197075 INFO 2024-04-09 22:29:49,693Z lrauvNc4ToNetcdf.py nudge_coords():840 9: 0.360 0.0001180 0.0000393 529 3.56 1.29 2.05 2019-07-17 01:47:04.048449039 INFO 2024-04-09 22:29:49,696Z lrauvNc4ToNetcdf.py nudge_coords():840 10: 0.358 0.0010004 0.0002432 2590 17.48 1.63 2.58 2019-07-17 02:04:33.422477007 INFO 2024-04-09 22:29:49,700Z lrauvNc4ToNetcdf.py nudge_coords():840 11: 0.343 -0.0000171 -0.0000385 43 0.28 -15.99 -25.26 2019-07-17 02:04:50.804706097 INFO 2024-04-09 22:29:49,702Z lrauvNc4ToNetcdf.py nudge_coords():840 12: 0.338 0.0001030 0.0001432 825 5.55 3.03 4.78 2019-07-17 02:10:24.230868101 INFO 2024-04-09 22:29:49,705Z lrauvNc4ToNetcdf.py nudge_coords():840 13: 0.314 -0.0000095 -0.0000083 128 0.86 -1.14 -1.80 2019-07-17 02:11:16.022489071 INFO 2024-04-09 22:29:49,708Z lrauvNc4ToNetcdf.py nudge_coords():840 14: 0.365 0.0027712 -0.0015933 4923 33.16 -5.61 -8.90 2019-07-17 02:44:26.195195913 INFO 2024-04-09 22:29:49,711Z lrauvNc4ToNetcdf.py nudge_coords():840 15: 0.376 0.0000277 0.0000073 454 3.05 0.28 0.44 2019-07-17 02:47:29.618638039 INFO 2024-04-09 22:29:49,714Z lrauvNc4ToNetcdf.py nudge_coords():840 16: 0.314 0.0002880 0.0000846 625 4.21 2.35 3.72 2019-07-17 02:51:42.810504913 INFO 2024-04-09 22:29:49,717Z lrauvNc4ToNetcdf.py nudge_coords():840 17: 0.368 0.0000980 -0.0000059 440 2.96 -0.23 -0.37 2019-07-17 02:54:40.510972977 INFO 2024-04-09 22:29:49,720Z lrauvNc4ToNetcdf.py nudge_coords():840 18: 0.397 0.0000047 -0.0000050 59 0.39 -1.50 -2.38 2019-07-17 02:55:04.395181894 INFO 2024-04-09 22:29:49,723Z lrauvNc4ToNetcdf.py nudge_coords():840 19: 0.372 0.0001301 0.0000110 800 5.38 0.24 0.38 2019-07-17 03:00:27.607105017 INFO 2024-04-09 22:29:49,726Z lrauvNc4ToNetcdf.py nudge_coords():840 20: 0.361 -0.0000009 0.0000100 93 0.62 1.90 3.00 2019-07-17 03:01:05.187222004 INFO 2024-04-09 22:29:49,728Z lrauvNc4ToNetcdf.py nudge_coords():840 21: 0.358 0.0000077 -0.0000014 53 0.35 -0.45 -0.72 2019-07-17 03:01:26.606585979 INFO 2024-04-09 22:29:49,732Z lrauvNc4ToNetcdf.py nudge_coords():840 22: 0.358 0.0022124 -0.0035541 7138 48.08 -8.60 -13.70 2019-07-17 03:49:31.943690062 INFO 2024-04-09 22:29:49,736Z lrauvNc4ToNetcdf.py nudge_coords():840 23: 0.369 0.0003605 -0.0001386 518 3.48 -4.63 -7.38 2019-07-17 03:53:01.206598043 INFO 2024-04-09 22:29:49,739Z lrauvNc4ToNetcdf.py nudge_coords():871 25: - - - 2079 14.00 - - INFO 2024-04-09 22:29:49,740Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 34288 INFO 2024-04-09 22:29:49,764Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190716T231550/20190717T050702/data.csv INFO 2024-04-09 22:29:49,871Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database INFO 2024-04-09 22:29:49,881Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['control_inputs_buoyancy_position', 'salinity', 'temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2024-04-09 22:29:50,136Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S' INFO 2024-04-09 22:29:50,251Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407_2S_scieng.nc