2016-07-11T20:07:46.211Z,1468267666.211 [Supervisor](IMPORTANT): Reading configuration overrides from Data/persisted.cfg 2016-07-11T20:07:50.778Z,1468267670.778 [SBIT](IMPORTANT): git: 2016-05-16-37-gf7bfef0 2016-07-11T20:07:50.778Z,1468267670.778 [SBIT](IMPORTANT): Kernel Release: 2.6.27.8 2016-07-11T20:07:50.778Z,1468267670.778 [SBIT](IMPORTANT): Kernel Version:#639 PREEMPT Wed Mar 12 12:53:33 PDT 2014 2016-07-11T20:07:52.858Z,1468267672.858 [BuoyancyServo](FAULT): Buoyancy failed to initialize 2016-07-11T20:08:11.217Z,1468267691.217 [SBIT](IMPORTANT): Beginning Startup BIT 2016-07-11T20:08:11.220Z,1468267691.220 [CBIT](IMPORTANT): Beginning GF scan 2016-07-11T20:08:38.688Z,1468267718.688 [CBIT](FAULT): Low side GF detected mA: CHAN 5 (24V): 0.391695 CHAN 4 (Batt): 0.391695 CHAN 2 (12V): 0.391695 CHAN 1 (5V): 0.391695 CHAN 0 (3.3V): 0.047348 OPEN: 0.000478 Full Scale Calc: 0.392 2016-07-11T20:09:04.900Z,1468267744.900 [SBIT](IMPORTANT): SBIT PASSED 2016-07-11T20:09:05.231Z,1468267745.231 [MissionManager](IMPORTANT): Started mission Startup 2016-07-11T20:10:50.957Z,1468267850.957 [DeadReckonUsingMultipleVelocitySources](FAULT): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan 2016-07-11T20:10:50.980Z,1468267850.980 [DeadReckonUsingSpeedCalculator](FAULT): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan 2016-07-11T20:11:05.910Z,1468267865.910 [MissionManager](IMPORTANT): Started mission Default 2016-07-11T20:13:07.414Z,1468267987.414 [NAL9602](FAULT): MT Queue status failed to be acquired within timeout. Will not retry this session. 2016-07-11T20:13:13.877Z,1468267993.877 [DeadReckonUsingMultipleVelocitySources](FAULT): Caught NaN! Will not write estimated position: latitude_ = nan, longitude_ = nan, depth_ = nan, horizontalPathLengthSinceLastFix_ = nan, latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan 2016-07-11T20:16:15.226Z,1468268175.226 [DeadReckonUsingMultipleVelocitySources](FAULT): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan 2016-07-11T20:16:34.348Z,1468268194.348 [DataOverHttps](IMPORTANT): SBD MTMSN=20160711T201633 2016-07-11T20:16:40.146Z,1468268200.146 [CommandLine](IMPORTANT): got command load ./Missions/Science/sci2.xml 2016-07-11T20:16:42.929Z,1468268202.929 [CommandLine](IMPORTANT): Loaded ./Missions/Science/sci2.xml 2016-07-11T20:16:47.997Z,1468268207.997 [CommandLine](IMPORTANT): got command set sci2.NeedCommsTime 20.000000 minute 2016-07-11T20:16:47.998Z,1468268207.998 [CommandLine](IMPORTANT): got command set sci2.Lat1 36.750000 degree 2016-07-11T20:16:47.998Z,1468268207.998 [CommandLine](IMPORTANT): got command set sci2.Lon1 -122.029999 degree 2016-07-11T20:16:47.999Z,1468268207.999 [CommandLine](IMPORTANT): got command set sci2.YoYoMaxDepth 50.000000 meter 2016-07-11T20:16:47.000Z,1468268208.000 [CommandLine](IMPORTANT): got command run 2016-07-11T20:16:48.003Z,1468268208.003 [CommandLine](IMPORTANT): Running 2016-07-11T20:16:48.108Z,1468268208.108 [MissionManager](IMPORTANT): Started mission sci2 2016-07-11T20:16:49.894Z,1468268209.894 [ThrusterServo](FAULT): getVelocity uart error serial timeout 2016-07-11T20:16:49.894Z,1468268209.894 [ThrusterServo](FAULT): Thruster uart error: serial timeout 2016-07-11T20:16:59.359Z,1468268219.359 [PNI_TCM](FAULT): Failed to acquire valid data within timeout. 2016-07-11T20:17:35.878Z,1468268255.878 [NAL9602](FAULT): received: 2016-07-11T20:19:16.129Z,1468268356.129 [DeadReckonUsingMultipleVelocitySources](FAULT): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan 2016-07-11T20:20:51.240Z,1468268451.240 [DataOverHttps](IMPORTANT): SBD MTMSN=20160711T202049 2016-07-11T20:21:04.999Z,1468268464.999 [CommandLine](IMPORTANT): got command configSet Express linearApproximation Rowe_600LCM.height_above_sea_floor 2.000000 meter persist 2016-07-11T20:22:02.799Z,1468268522.799 [DataOverHttps](IMPORTANT): SBD MTMSN=20160711T202201 2016-07-11T20:22:17.653Z,1468268537.653 [NAL9602](FAULT): MT Queue status failed to be acquired within timeout. Will not retry this session. 2016-07-11T20:22:17.743Z,1468268537.743 [DeadReckonUsingMultipleVelocitySources](FAULT): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan 2016-07-11T20:22:18.002Z,1468268538.002 [CommandLine](IMPORTANT): got command load ./Missions/Science/sci2.xml 2016-07-11T20:22:19.937Z,1468268539.937 [CommandLine](IMPORTANT): Loaded ./Missions/Science/sci2.xml 2016-07-11T20:22:25.263Z,1468268545.263 [CommandLine](IMPORTANT): got command set sci2.NeedCommsTime 20.000000 minute 2016-07-11T20:22:25.264Z,1468268545.264 [CommandLine](IMPORTANT): got command set sci2.Lat1 36.825001 degree 2016-07-11T20:22:25.265Z,1468268545.265 [CommandLine](IMPORTANT): got command set sci2.Lon1 -121.843002 degree 2016-07-11T20:22:25.266Z,1468268545.266 [CommandLine](IMPORTANT): got command set sci2.YoYoMaxDepth 50.000000 meter 2016-07-11T20:22:25.266Z,1468268545.266 [CommandLine](IMPORTANT): got command run 2016-07-11T20:22:25.268Z,1468268545.268 [CommandLine](IMPORTANT): Running 2016-07-11T20:22:25.297Z,1468268545.297 [MissionManager](IMPORTANT): Started mission sci2 2016-07-11T20:22:26.350Z,1468268546.350 [ThrusterServo](FAULT): getVelocity uart error serial timeout 2016-07-11T20:22:26.351Z,1468268546.351 [ThrusterServo](FAULT): Thruster uart error: serial timeout 2016-07-11T20:22:31.873Z,1468268551.873 [DeadReckonUsingMultipleVelocitySources](FAULT): Caught NaN! Will not write estimated position: latitude_ = nan, longitude_ = nan, depth_ = nan, horizontalPathLengthSinceLastFix_ = nan, latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan 2016-07-11T20:25:04.259Z,1468268704.259 [NAL9602](FAULT): received: 2016-07-11T20:25:35.166Z,1468268735.166 [DeadReckonUsingMultipleVelocitySources](FAULT): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan 2016-07-11T20:26:21.725Z,1468268781.725 [PNI_TCM](FAULT): Failed to acquire valid data within timeout. 2016-07-11T20:26:51.255Z,1468268811.255 [DeadReckonUsingMultipleVelocitySources](FAULT): Caught NaN! Will not write estimated position: latitude_ = nan, longitude_ = nan, depth_ = nan, horizontalPathLengthSinceLastFix_ = nan, latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan 2016-07-11T20:27:20.907Z,1468268840.907 [sci2:NeedComms:F.Buoyancy:A_Timeout:A](IMPORTANT): buoyancy pump-down timeout at 951.908354 ml 2016-07-11T20:29:51.937Z,1468268991.937 [DeadReckonUsingMultipleVelocitySources](FAULT): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan 2016-07-11T20:31:59.250Z,1468269119.250 [PNI_TCM](FAULT): Failed to acquire valid data within timeout. 2016-07-11T20:32:53.368Z,1468269173.368 [DeadReckonUsingMultipleVelocitySources](FAULT): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan 2016-07-11T20:35:18.198Z,1468269318.198 [ThrusterServo](FAULT): getVelocity uart error serial timeout 2016-07-11T20:35:18.199Z,1468269318.199 [ThrusterServo](FAULT): Thruster uart error: serial timeout 2016-07-11T20:35:54.364Z,1468269354.364 [DeadReckonUsingMultipleVelocitySources](FAULT): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan 2016-07-11T20:37:53.799Z,1468269473.799 [PNI_TCM](FAULT): Failed to acquire valid data within timeout. 2016-07-11T20:38:55.406Z,1468269535.406 [DeadReckonUsingMultipleVelocitySources](FAULT): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan 2016-07-11T20:41:56.544Z,1468269716.544 [DeadReckonUsingMultipleVelocitySources](FAULT): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan 2016-07-11T20:44:57.614Z,1468269897.614 [DeadReckonUsingMultipleVelocitySources](FAULT): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan 2016-07-11T20:47:58.575Z,1468270078.575 [DeadReckonUsingMultipleVelocitySources](FAULT): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan 2016-07-11T20:49:52.854Z,1468270192.854 [PNI_TCM](FAULT): Failed to acquire valid data within timeout. 2016-07-11T20:50:59.489Z,1468270259.489 [DeadReckonUsingMultipleVelocitySources](FAULT): Will not write estimated position: latitudeAccuracy_ = nan, longitudeAccuracy_ = nan, depthAccuracy_ = nan 2016-07-11T20:53:21.768Z,1468270401.768 [PNI_TCM](FAULT): Failed to acquire valid data within timeout. 2016-07-11T20:55:26.033Z,1468270526.033 [sci2:NeedComms:F.Buoyancy:A_Timeout:A](IMPORTANT): buoyancy pump-down timeout at 945.864886 ml 2016-07-11T20:59:23.585Z,1468270763.585 [PNI_TCM](FAULT): Failed to acquire valid data within timeout. 2016-07-11T21:01:40.407Z,1468270900.407 [PNI_TCM](FAULT): Failed to acquire valid data within timeout. 2016-07-11T21:03:43.040Z,1468271023.040 [PNI_TCM](FAULT): Failed to acquire valid data within timeout. 2016-07-11T21:06:13.385Z,1468271173.385 [PNI_TCM](FAULT): Failed to acquire valid data within timeout. 2016-07-11T21:09:04.907Z,1468271344.907 [PNI_TCM](FAULT): Failed to acquire valid data within timeout. 2016-07-11T21:14:32.802Z,1468271672.802 [PNI_TCM](FAULT): Failed to acquire valid data within timeout. 2016-07-11T21:17:45.351Z,1468271865.351 [NAL9602](IMPORTANT): SBD MO Status=0, MOMSN=39826, MT Status=1, MTMSN=623 2016-07-11T21:17:49.520Z,1468271869.520 [CommandLine](IMPORTANT): got command get DeadReckonWithRespectToSeafloor.loadAtStartup 2016-07-11T21:17:49.520Z,1468271869.520 [CommandLine](IMPORTANT): DeadReckonWithRespectToSeafloor.loadAtStartup 0 bool 2016-07-11T21:20:40.269Z,1468272040.269 [PNI_TCM](FAULT): Failed to acquire valid data within timeout. 2016-07-11T21:22:15.731Z,1468272135.731 [PNI_TCM](FAULT): Failed to acquire valid data within timeout. 2016-07-11T21:23:21.633Z,1468272201.633 [PNI_TCM](FAULT): Failed to acquire valid data within timeout. 2016-07-11T21:27:16.407Z,1468272436.407 [CommandLine](IMPORTANT): got command stop 2016-07-11T21:27:16.413Z,1468272436.413 [CommandLine](IMPORTANT): Scheduling is paused 2016-07-11T21:27:16.922Z,1468272436.922 [MissionManager](IMPORTANT): Started mission Default 2016-07-11T21:28:38.485Z,1468272518.485 [CommandLine](IMPORTANT): got command configSet list 2016-07-11T21:28:38.486Z,1468272518.486 [CommandLine](IMPORTANT): Listing configuration overrides from Data/persisted.cfg 2016-07-11T21:28:38.488Z,1468272518.488 [CommandLine](IMPORTANT): AcousticModem_Benthos_ATM900.loadAtStartup=0 bool; 2016-07-11T21:28:38.488Z,1468272518.488 [CommandLine](IMPORTANT): CANONSampler.baud=19200 bit_per_second; 2016-07-11T21:28:38.489Z,1468272518.489 [CommandLine](IMPORTANT): CANONSampler.sampleTimeout=5 minute; 2016-07-11T21:28:38.489Z,1468272518.489 [CommandLine](IMPORTANT): Express linearApproximation Rowe_600LCM.height_above_sea_floor 2.000000 meter; 2016-07-11T21:28:38.489Z,1468272518.489 [CommandLine](IMPORTANT): StratificationFrontDetector.threshold=0.3 celsius; 2016-07-11T21:28:38.493Z,1468272518.493 [CommandLine](IMPORTANT): VerticalControl.massDefault=0 centimeter; 2016-07-11T21:28:38.494Z,1468272518.494 [CommandLine](IMPORTANT): VerticalTemperatureHomogeneityIndexCalculator.depth1=5 meter; 2016-07-11T21:28:38.494Z,1468272518.494 [CommandLine](IMPORTANT): VerticalTemperatureHomogeneityIndexCalculator.depth2=20 meter; 2016-07-11T21:28:38.494Z,1468272518.494 [CommandLine](IMPORTANT): VerticalTemperatureHomogeneityIndexCalculator.depth3=35 meter; 2016-07-11T21:28:38.495Z,1468272518.495 [CommandLine](IMPORTANT): VerticalTemperatureHomogeneityIndexCalculator.depth4=50 meter; 2016-07-11T21:29:12.885Z,1468272552.885 [CommandLine](IMPORTANT): got command show variable deadReckonwith 2016-07-11T21:29:13.129Z,1468272553.129 [CommandLine](IMPORTANT): DeadReckonWithRespectToWater.loadAtStartup (bool) 2016-07-11T21:29:13.130Z,1468272553.130 [CommandLine](IMPORTANT): DeadReckonWithRespectToWater.verbosity (count) 2016-07-11T21:29:13.140Z,1468272553.140 [CommandLine](IMPORTANT): DeadReckonWithRespectToWater.allowableFailures (count) 2016-07-11T21:29:13.142Z,1468272553.142 [CommandLine](IMPORTANT): DeadReckonWithRespectToWater.accuracyPremultiplier (none) 2016-07-11T21:29:13.143Z,1468272553.143 [CommandLine](IMPORTANT): DeadReckonWithRespectToWater.orientationStaleAfter (minute) 2016-07-11T21:29:13.154Z,1468272553.154 [CommandLine](IMPORTANT): DeadReckonWithRespectToWater.velocityStaleAfter (second) 2016-07-11T21:29:13.157Z,1468272553.157 [CommandLine](IMPORTANT): DeadReckonWithRespectToSeafloor.loadAtStartup (bool) 2016-07-11T21:29:13.159Z,1468272553.159 [CommandLine](IMPORTANT): DeadReckonWithRespectToSeafloor.verbosity (count) 2016-07-11T21:29:13.161Z,1468272553.161 [CommandLine](IMPORTANT): DeadReckonWithRespectToSeafloor.allowableFailures (count) 2016-07-11T21:29:13.162Z,1468272553.162 [CommandLine](IMPORTANT): DeadReckonWithRespectToSeafloor.accuracyPremultiplier (none) 2016-07-11T21:29:13.163Z,1468272553.163 [CommandLine](IMPORTANT): DeadReckonWithRespectToSeafloor.orientationStaleAfter (minute) 2016-07-11T21:29:13.173Z,1468272553.173 [CommandLine](IMPORTANT): DeadReckonWithRespectToSeafloor.velocityStaleAfter (second) 2016-07-11T21:29:34.162Z,1468272574.162 [CommandLine](IMPORTANT): got command get DeadReckonWithRespectToSeafloor.loadAtStartup 2016-07-11T21:29:34.162Z,1468272574.162 [CommandLine](IMPORTANT): DeadReckonWithRespectToSeafloor.loadAtStartup 0 bool 2016-07-11T21:30:04.291Z,1468272604.291 [DataOverHttps](IMPORTANT): SBD MTMSN=20160711T213003 2016-07-11T21:30:13.131Z,1468272613.131 [CommandLine](IMPORTANT): got command configSet DeadReckonWithRespectToSeafloor.loadAtStartup 1.000000 bool persist 2016-07-11T21:30:13.132Z,1468272613.132 [CommandLine](IMPORTANT): configSet DeadReckonWithRespectToSeafloor.loadAtStartup requires a restart to take effect. 2016-07-11T21:30:50.216Z,1468272650.216 [CommandLine](IMPORTANT): got command configSet Express linearApproximation platform_speed_wrt_ground 0.500000 meter_per_second persist 2016-07-11T21:31:00.502Z,1468272660.502 [CommandLine](IMPORTANT): got command configSet list 2016-07-11T21:31:00.502Z,1468272660.502 [CommandLine](IMPORTANT): Listing configuration overrides from Data/persisted.cfg 2016-07-11T21:31:00.509Z,1468272660.509 [CommandLine](IMPORTANT): AcousticModem_Benthos_ATM900.loadAtStartup=0 bool; 2016-07-11T21:31:00.509Z,1468272660.509 [CommandLine](IMPORTANT): CANONSampler.baud=19200 bit_per_second; 2016-07-11T21:31:00.510Z,1468272660.510 [CommandLine](IMPORTANT): CANONSampler.sampleTimeout=5 minute; 2016-07-11T21:31:00.510Z,1468272660.510 [CommandLine](IMPORTANT): DeadReckonWithRespectToSeafloor.loadAtStartup=1 bool; 2016-07-11T21:31:00.510Z,1468272660.510 [CommandLine](IMPORTANT): Express linearApproximation Rowe_600LCM.height_above_sea_floor 2.000000 meter; 2016-07-11T21:31:00.510Z,1468272660.510 [CommandLine](IMPORTANT): Express linearApproximation platform_speed_wrt_ground 0.500000 meter_per_second; 2016-07-11T21:31:00.510Z,1468272660.510 [CommandLine](IMPORTANT): StratificationFrontDetector.threshold=0.3 celsius; 2016-07-11T21:31:00.510Z,1468272660.510 [CommandLine](IMPORTANT): VerticalControl.massDefault=0 centimeter; 2016-07-11T21:31:00.510Z,1468272660.510 [CommandLine](IMPORTANT): VerticalTemperatureHomogeneityIndexCalculator.depth1=5 meter; 2016-07-11T21:31:00.510Z,1468272660.510 [CommandLine](IMPORTANT): VerticalTemperatureHomogeneityIndexCalculator.depth2=20 meter; 2016-07-11T21:31:00.511Z,1468272660.511 [CommandLine](IMPORTANT): VerticalTemperatureHomogeneityIndexCalculator.depth3=35 meter; 2016-07-11T21:31:00.511Z,1468272660.511 [CommandLine](IMPORTANT): VerticalTemperatureHomogeneityIndexCalculator.depth4=50 meter; 2016-07-11T21:31:53.234Z,1468272713.234 [CommandLine](IMPORTANT): got command show best height_above_sea_floor 2016-07-11T21:31:53.234Z,1468272713.234 [CommandLine](IMPORTANT): height_above_sea_floor best is NavChart.height_above_sea_floor 2016-07-11T21:31:56.784Z,1468272716.784 [CommandLine](IMPORTANT): got command failComponent 2016-07-11T21:31:56.787Z,1468272716.787 [CommandLine](IMPORTANT): Failed components: 2016-07-11T21:31:56.788Z,1468272716.788 [CommandLine](IMPORTANT): No failed Components. 2016-07-11T21:32:08.792Z,1468272728.792 [CommandLine](IMPORTANT): got command show variable height_above_sea_floor 2016-07-11T21:32:08.801Z,1468272728.801 [CommandLine](IMPORTANT): height_above_sea_floor (meter) 2016-07-11T21:32:09.306Z,1468272729.306 [CommandLine](IMPORTANT): NavChart.height_above_sea_floor (meter) 2016-07-11T21:32:09.322Z,1468272729.322 [CommandLine](IMPORTANT): Rowe_600LCM.height_above_sea_floor (meter) 2016-07-11T21:32:17.679Z,1468272737.679 [CommandLine](IMPORTANT): got command get Rowe_600LCM.height_above_sea_floor 2016-07-11T21:32:17.717Z,1468272737.717 [CommandLine](IMPORTANT): Rowe_600LCM.height_above_sea_floor nan m