INFO 2024-04-09 23:23:06,987Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T181302/202011041813_202011041831.nc4 file...
INFO 2024-04-09 23:23:06,987Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/202011041813_202011041831.nc4
INFO 2024-04-09 23:23:07,469Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T181302/202011041813_202011041831.nc4
INFO 2024-04-09 23:23:07,505Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:07,592Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:07,665Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:07,737Z lrauvNc4ToNetcdf.py createSeries():299 time     :   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:07,809Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:07,881Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:07,952Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,023Z lrauvNc4ToNetcdf.py createSeries():299 time     :   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,093Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,162Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,231Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,301Z lrauvNc4ToNetcdf.py createSeries():299 time     :   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,370Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,440Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,510Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,592Z lrauvNc4ToNetcdf.py createSeries():299 time     :   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,649Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes
INFO 2024-04-09 23:23:08,653Z lrauvNc4ToNetcdf.py createSeries():299 time_fix :    1 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,657Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2024-04-09 23:23:08,659Z lrauvNc4ToNetcdf.py createSeries():299 latitude_fix:    1 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,662Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2024-04-09 23:23:08,664Z lrauvNc4ToNetcdf.py createSeries():299 longitude_fix:    1 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,667Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2024-04-09 23:23:08,671Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2024-04-09 23:23:08,672Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable platform_elevator_angle empty so skipping
INFO 2024-04-09 23:23:08,674Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable platform_mass_position empty so skipping
INFO 2024-04-09 23:23:08,677Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2024-04-09 23:23:08,681Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2024-04-09 23:23:08,684Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2024-04-09 23:23:08,688Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2024-04-09 23:23:08,691Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_salinity renaming to bin_mean_sea_water_salinity
INFO 2024-04-09 23:23:08,695Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to bin_median_sea_water_salinity
INFO 2024-04-09 23:23:08,698Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_temperature renaming to bin_mean_sea_water_temperature
INFO 2024-04-09 23:23:08,701Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to bin_median_sea_water_temperature
INFO 2024-04-09 23:23:08,703Z lrauvNc4ToNetcdf.py createSeries():299 downwelling_photosynthetic_photon_flux_in_sea_water:   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,710Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2024-04-09 23:23:08,713Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2024-04-09 23:23:08,717Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2024-04-09 23:23:08,721Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2024-04-09 23:23:08,724Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2024-04-09 23:23:08,728Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg470nm renaming to volumescatcoeff117deg470nm
INFO 2024-04-09 23:23:08,731Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg650nm renaming to volumescatcoeff117deg650nm
INFO 2024-04-09 23:23:08,734Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff470nm renaming to particulatebackscatteringcoeff470nm
INFO 2024-04-09 23:23:08,737Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff650nm renaming to particulatebackscatteringcoeff650nm
INFO 2024-04-09 23:23:08,740Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_mean_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 23:23:08,743Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_median_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 23:23:08,750Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable platform_battery_charge empty so skipping
INFO 2024-04-09 23:23:08,754Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable platform_battery_voltage empty so skipping
INFO 2024-04-09 23:23:08,755Z lrauvNc4ToNetcdf.py createSeries():299 platform_average_current:    1 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,759Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group Onboard parameter platform_average_current renaming to health_platform_average_current
INFO 2024-04-09 23:23:08,760Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2024-04-09 23:23:08,762Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,768Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 23:23:08,770Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,776Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 23:23:08,777Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   86 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,784Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 23:23:08,818Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle:   85 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,873Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 23:23:08,901Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle:   85 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:08,951Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 23:23:08,975Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation:   85 v_t values found before 2020-11-04 18:13:00 and after 2020-11-04 18:31:00
INFO 2024-04-09 23:23:09,026Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 23:23:09,027Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T181302/202011041813_202011041831.nc4
INFO 2024-04-09 23:23:09,151Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 2750 vehicle dead reckoned longitude and latitude values
INFO 2024-04-09 23:23:09,265Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 4 longitude_fix and latititude_fix values from /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T181302/202011041813_202011041831.nc4
INFO 2024-04-09 23:23:09,265Z lrauvNc4ToNetcdf.py nudge_coords():786 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2024-04-09 23:23:09,266Z lrauvNc4ToNetcdf.py nudge_coords():807                  -            -            -       484      3.25              -              -                             -
INFO 2024-04-09 23:23:09,267Z lrauvNc4ToNetcdf.py nudge_coords():840    0:        0.374    0.0000098   -0.0000007       432      2.92          -0.03          -0.04 2020-11-04 18:19:13.343990088
INFO 2024-04-09 23:23:09,270Z lrauvNc4ToNetcdf.py nudge_coords():840    1:        0.381    0.0000486    0.0000063       962      6.47           0.11           0.18 2020-11-04 18:25:42.236099958
INFO 2024-04-09 23:23:09,272Z lrauvNc4ToNetcdf.py nudge_coords():840    2:        0.373    0.0000239   -0.0000196       824      5.54          -0.41          -0.65 2020-11-04 18:31:15.331129074
INFO 2024-04-09 23:23:09,274Z lrauvNc4ToNetcdf.py nudge_coords():871    4:            -            -            -        47      0.31              -              -
INFO 2024-04-09 23:23:09,274Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 2749
INFO 2024-04-09 23:23:09,302Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/tethys_ac/between/20201104T171302/20201104T193134/data.csv
INFO 2024-04-09 23:23:09,398Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database
INFO 2024-04-09 23:23:09,402Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'salinity', 'temperature', 'bin_mean_sea_water_salinity', 'bin_median_sea_water_salinity', 'bin_mean_sea_water_temperature', 'bin_median_sea_water_temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'volumescatcoeff117deg470nm', 'volumescatcoeff117deg650nm', 'particulatebackscatteringcoeff470nm', 'particulatebackscatteringcoeff650nm', 'bin_mean_mass_concentration_of_chlorophyll_in_sea_water', 'bin_median_mass_concentration_of_chlorophyll_in_sea_water', 'health_platform_average_current', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2024-04-09 23:23:09,639Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S'
INFO 2024-04-09 23:23:09,800Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T181302/202011041813_202011041831_2S_scieng.nc