INFO 2024-04-09 23:22:56,711Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T165515/202011041655_202011041739.nc4 file...
INFO 2024-04-09 23:22:56,712Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/202011041655_202011041739.nc4
INFO 2024-04-09 23:22:57,147Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T165515/202011041655_202011041739.nc4
INFO 2024-04-09 23:22:57,178Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:57,240Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:57,301Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:57,363Z lrauvNc4ToNetcdf.py createSeries():299 time     :   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:57,422Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:57,481Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:57,540Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:57,600Z lrauvNc4ToNetcdf.py createSeries():299 time     :   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:57,661Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:57,720Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:57,780Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:57,840Z lrauvNc4ToNetcdf.py createSeries():299 time     :   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:57,900Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:57,963Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:58,023Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:58,083Z lrauvNc4ToNetcdf.py createSeries():299 time     :   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:58,126Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes
INFO 2024-04-09 23:22:58,132Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2024-04-09 23:22:58,136Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2024-04-09 23:22:58,139Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2024-04-09 23:22:58,143Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2024-04-09 23:22:58,148Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2024-04-09 23:22:58,152Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2024-04-09 23:22:58,157Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2024-04-09 23:22:58,163Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2024-04-09 23:22:58,168Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2024-04-09 23:22:58,173Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2024-04-09 23:22:58,176Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_salinity renaming to bin_mean_sea_water_salinity
INFO 2024-04-09 23:22:58,180Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to bin_median_sea_water_salinity
INFO 2024-04-09 23:22:58,184Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_temperature renaming to bin_mean_sea_water_temperature
INFO 2024-04-09 23:22:58,187Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to bin_median_sea_water_temperature
INFO 2024-04-09 23:22:58,189Z lrauvNc4ToNetcdf.py createSeries():299 downwelling_photosynthetic_photon_flux_in_sea_water:   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:58,197Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2024-04-09 23:22:58,203Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2024-04-09 23:22:58,209Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2024-04-09 23:22:58,215Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2024-04-09 23:22:58,221Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2024-04-09 23:22:58,226Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg470nm renaming to volumescatcoeff117deg470nm
INFO 2024-04-09 23:22:58,232Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg650nm renaming to volumescatcoeff117deg650nm
INFO 2024-04-09 23:22:58,237Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff470nm renaming to particulatebackscatteringcoeff470nm
INFO 2024-04-09 23:22:58,242Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff650nm renaming to particulatebackscatteringcoeff650nm
INFO 2024-04-09 23:22:58,246Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_mean_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 23:22:58,249Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_median_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 23:22:58,259Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2024-04-09 23:22:58,267Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2024-04-09 23:22:58,270Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group Onboard parameter platform_average_current renaming to health_platform_average_current
INFO 2024-04-09 23:22:58,274Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 23:22:58,275Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:58,284Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 23:22:58,285Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:58,294Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 23:22:58,296Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   36 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:58,304Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 23:22:58,334Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle:   35 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:58,677Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 23:22:58,701Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle:   35 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:59,047Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 23:22:59,068Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation:   35 v_t values found before 2020-11-04 16:55:00 and after 2020-11-04 17:39:00
INFO 2024-04-09 23:22:59,416Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 23:22:59,417Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T165515/202011041655_202011041739.nc4
INFO 2024-04-09 23:22:59,521Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 6172 vehicle dead reckoned longitude and latitude values
INFO 2024-04-09 23:22:59,619Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 5 longitude_fix and latititude_fix values from /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T165515/202011041655_202011041739.nc4
INFO 2024-04-09 23:22:59,620Z lrauvNc4ToNetcdf.py nudge_coords():786 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2024-04-09 23:22:59,621Z lrauvNc4ToNetcdf.py nudge_coords():807                  -            -            -         0      0.00              -              -                             -
INFO 2024-04-09 23:22:59,622Z lrauvNc4ToNetcdf.py nudge_coords():840    0:        0.382    0.0000442   -0.0000358       187      1.34          -3.11          -4.96 2020-11-04 16:58:32.738017082
INFO 2024-04-09 23:22:59,625Z lrauvNc4ToNetcdf.py nudge_coords():840    1:        0.374    0.0000328   -0.0000321      1090      7.40          -0.51          -0.80 2020-11-04 17:05:56.945095062
INFO 2024-04-09 23:22:59,629Z lrauvNc4ToNetcdf.py nudge_coords():840    2:        0.397    0.0000401    0.0000135       831      5.59           0.28           0.45 2020-11-04 17:11:32.911887884
INFO 2024-04-09 23:22:59,632Z lrauvNc4ToNetcdf.py nudge_coords():840    3:        0.378    0.0001242    0.0000604      3246     21.86           0.32           0.51 2020-11-04 17:33:24.752167940
INFO 2024-04-09 23:22:59,635Z lrauvNc4ToNetcdf.py nudge_coords():871    5:            -            -            -       817      5.81              -              -
INFO 2024-04-09 23:22:59,635Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 6171
INFO 2024-04-09 23:22:59,672Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/tethys_ac/between/20201104T155524/20201104T183914/data.csv
INFO 2024-04-09 23:22:59,768Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database
INFO 2024-04-09 23:22:59,773Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'salinity', 'temperature', 'bin_mean_sea_water_salinity', 'bin_median_sea_water_salinity', 'bin_mean_sea_water_temperature', 'bin_median_sea_water_temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'volumescatcoeff117deg470nm', 'volumescatcoeff117deg650nm', 'particulatebackscatteringcoeff470nm', 'particulatebackscatteringcoeff650nm', 'bin_mean_mass_concentration_of_chlorophyll_in_sea_water', 'bin_median_mass_concentration_of_chlorophyll_in_sea_water', 'health_platform_battery_charge', 'health_platform_average_voltage', 'health_platform_average_current', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2024-04-09 23:23:00,449Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S'
INFO 2024-04-09 23:23:01,302Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T165515/202011041655_202011041739_2S_scieng.nc