INFO 2024-04-09 23:22:47,469Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T151312/202011041513_202011041627.nc4 file...
INFO 2024-04-09 23:22:47,469Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/202011041513_202011041627.nc4
INFO 2024-04-09 23:22:47,874Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T151312/202011041513_202011041627.nc4
INFO 2024-04-09 23:22:47,905Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:47,972Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:48,033Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:48,095Z lrauvNc4ToNetcdf.py createSeries():299 time     :   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:48,156Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:48,215Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:48,274Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:48,335Z lrauvNc4ToNetcdf.py createSeries():299 time     :   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:48,394Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:48,454Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:48,513Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:48,575Z lrauvNc4ToNetcdf.py createSeries():299 time     :   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:48,638Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:48,705Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:48,768Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:48,829Z lrauvNc4ToNetcdf.py createSeries():299 time     :   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:48,871Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes
INFO 2024-04-09 23:22:48,879Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2024-04-09 23:22:48,883Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2024-04-09 23:22:48,886Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2024-04-09 23:22:48,890Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2024-04-09 23:22:48,893Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2024-04-09 23:22:48,897Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2024-04-09 23:22:48,900Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2024-04-09 23:22:48,905Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2024-04-09 23:22:48,909Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2024-04-09 23:22:48,912Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2024-04-09 23:22:48,916Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_salinity renaming to bin_mean_sea_water_salinity
INFO 2024-04-09 23:22:48,919Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to bin_median_sea_water_salinity
INFO 2024-04-09 23:22:48,923Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_temperature renaming to bin_mean_sea_water_temperature
INFO 2024-04-09 23:22:48,926Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to bin_median_sea_water_temperature
INFO 2024-04-09 23:22:48,930Z lrauvNc4ToNetcdf.py createSeries():299 downwelling_photosynthetic_photon_flux_in_sea_water:   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:48,942Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2024-04-09 23:22:48,947Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2024-04-09 23:22:48,952Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2024-04-09 23:22:48,956Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2024-04-09 23:22:48,960Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2024-04-09 23:22:48,965Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg470nm renaming to volumescatcoeff117deg470nm
INFO 2024-04-09 23:22:48,969Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg650nm renaming to volumescatcoeff117deg650nm
INFO 2024-04-09 23:22:48,972Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff470nm renaming to particulatebackscatteringcoeff470nm
INFO 2024-04-09 23:22:48,976Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff650nm renaming to particulatebackscatteringcoeff650nm
INFO 2024-04-09 23:22:48,979Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_mean_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 23:22:48,983Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_median_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 23:22:48,992Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2024-04-09 23:22:49,000Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2024-04-09 23:22:49,001Z lrauvNc4ToNetcdf.py createSeries():299 platform_average_current:    1 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:49,004Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group Onboard parameter platform_average_current renaming to health_platform_average_current
INFO 2024-04-09 23:22:49,006Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2024-04-09 23:22:49,009Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:49,023Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 23:22:49,025Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:49,039Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 23:22:49,042Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   66 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:49,055Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 23:22:49,082Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle:   65 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:49,656Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 23:22:49,681Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle:   65 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:50,262Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 23:22:50,285Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation:   65 v_t values found before 2020-11-04 15:13:00 and after 2020-11-04 16:27:00
INFO 2024-04-09 23:22:50,855Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 23:22:50,856Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T151312/202011041513_202011041627.nc4
INFO 2024-04-09 23:22:50,978Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 10735 vehicle dead reckoned longitude and latitude values
INFO 2024-04-09 23:22:51,075Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 17 longitude_fix and latititude_fix values from /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T151312/202011041513_202011041627.nc4
INFO 2024-04-09 23:22:51,076Z lrauvNc4ToNetcdf.py nudge_coords():786 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2024-04-09 23:22:51,077Z lrauvNc4ToNetcdf.py nudge_coords():807                  -            -            -         0      0.00              -              -                             -
INFO 2024-04-09 23:22:51,077Z lrauvNc4ToNetcdf.py nudge_coords():840    0:        0.384    0.0000006    0.0000124        27      0.18           8.19          13.06 2020-11-04 15:15:06.048103094
INFO 2024-04-09 23:22:51,080Z lrauvNc4ToNetcdf.py nudge_coords():840    1:        0.371    0.0000029    0.0000101       176      1.26           0.93           1.49 2020-11-04 15:16:22.280280113
INFO 2024-04-09 23:22:51,082Z lrauvNc4ToNetcdf.py nudge_coords():840    2:        0.372   -0.0000071   -0.0000174       811      5.59          -0.36          -0.58 2020-11-04 15:21:57.855091095
INFO 2024-04-09 23:22:51,084Z lrauvNc4ToNetcdf.py nudge_coords():840    3:        0.390    0.0000235    0.0000026       510      3.43           0.09           0.14 2020-11-04 15:25:24.033823967
INFO 2024-04-09 23:22:51,086Z lrauvNc4ToNetcdf.py nudge_coords():840    4:        0.341    0.0000085    0.0000018        87      0.58           0.36           0.57 2020-11-04 15:25:59.274058104
INFO 2024-04-09 23:22:51,089Z lrauvNc4ToNetcdf.py nudge_coords():840    5:        0.383    0.0000121   -0.0000058       698      4.69          -0.14          -0.23 2020-11-04 15:30:41.271903992
INFO 2024-04-09 23:22:51,091Z lrauvNc4ToNetcdf.py nudge_coords():840    6:        0.378    0.0000351   -0.0000328       819      5.51          -0.69          -1.10 2020-11-04 15:36:12.280061960
INFO 2024-04-09 23:22:51,093Z lrauvNc4ToNetcdf.py nudge_coords():840    7:        0.363    0.0000220   -0.0000023       825      5.55          -0.05          -0.08 2020-11-04 15:41:45.731237888
INFO 2024-04-09 23:22:51,095Z lrauvNc4ToNetcdf.py nudge_coords():840    8:        0.383    0.0000292    0.0000023       825      5.55           0.05           0.08 2020-11-04 15:47:19.180094957
INFO 2024-04-09 23:22:51,098Z lrauvNc4ToNetcdf.py nudge_coords():840    9:        0.382    0.0000435   -0.0000201       816      5.49          -0.43          -0.68 2020-11-04 15:52:48.908077002
INFO 2024-04-09 23:22:51,100Z lrauvNc4ToNetcdf.py nudge_coords():840   10:        0.355    0.0000332    0.0000082       819      5.51           0.17           0.27 2020-11-04 15:58:19.808712006
INFO 2024-04-09 23:22:51,103Z lrauvNc4ToNetcdf.py nudge_coords():840   11:        0.369    0.0000179   -0.0000098       819      5.51          -0.21          -0.33 2020-11-04 16:03:50.678236961
INFO 2024-04-09 23:22:51,105Z lrauvNc4ToNetcdf.py nudge_coords():840   12:        0.379    0.0001386   -0.0001327       837      5.63          -2.74          -4.37 2020-11-04 16:09:28.924017906
INFO 2024-04-09 23:22:51,108Z lrauvNc4ToNetcdf.py nudge_coords():840   13:        0.383    0.0012406   -0.0011575       817      5.50         -24.53         -39.03 2020-11-04 16:14:59.095901966
INFO 2024-04-09 23:22:51,110Z lrauvNc4ToNetcdf.py nudge_coords():840   14:        0.381    0.0000528   -0.0002394       838      5.64          -4.94          -7.87 2020-11-04 16:20:37.852082014
INFO 2024-04-09 23:22:51,114Z lrauvNc4ToNetcdf.py nudge_coords():840   15:        0.374    0.0000355   -0.0000051       818      5.50          -0.11          -0.17 2020-11-04 16:26:08.456697941
INFO 2024-04-09 23:22:51,117Z lrauvNc4ToNetcdf.py nudge_coords():871   17:            -            -            -       192      1.29              -              -
INFO 2024-04-09 23:22:51,117Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 10734
INFO 2024-04-09 23:22:51,149Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/tethys_ac/between/20201104T141321/20201104T172726/data.csv
INFO 2024-04-09 23:22:51,246Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database
INFO 2024-04-09 23:22:51,251Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'salinity', 'temperature', 'bin_mean_sea_water_salinity', 'bin_median_sea_water_salinity', 'bin_mean_sea_water_temperature', 'bin_median_sea_water_temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'volumescatcoeff117deg470nm', 'volumescatcoeff117deg650nm', 'particulatebackscatteringcoeff470nm', 'particulatebackscatteringcoeff650nm', 'bin_mean_mass_concentration_of_chlorophyll_in_sea_water', 'bin_median_mass_concentration_of_chlorophyll_in_sea_water', 'health_platform_battery_charge', 'health_platform_average_voltage', 'health_platform_average_current', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2024-04-09 23:22:51,773Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S'
INFO 2024-04-09 23:22:52,319Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T151312/202011041513_202011041627_2S_scieng.nc