INFO 2024-04-09 23:22:27,472Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T030345/202011040303_202011040351.nc4 file...
INFO 2024-04-09 23:22:27,472Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/202011040303_202011040351.nc4
INFO 2024-04-09 23:22:27,898Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T030345/202011040303_202011040351.nc4
INFO 2024-04-09 23:22:27,930Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   25 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:27,997Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   25 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:28,066Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   26 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:28,136Z lrauvNc4ToNetcdf.py createSeries():299 time     :   26 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:28,204Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   25 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:28,276Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   25 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:28,378Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   26 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:28,474Z lrauvNc4ToNetcdf.py createSeries():299 time     :   26 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:28,593Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   25 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:28,661Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   25 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:28,726Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   26 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:28,791Z lrauvNc4ToNetcdf.py createSeries():299 time     :   26 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:28,856Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   25 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:28,923Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   25 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:28,988Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   26 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:29,054Z lrauvNc4ToNetcdf.py createSeries():299 time     :   26 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:29,099Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes
INFO 2024-04-09 23:22:29,105Z lrauvNc4ToNetcdf.py createSeries():299 time_fix :    1 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:29,108Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2024-04-09 23:22:29,110Z lrauvNc4ToNetcdf.py createSeries():299 latitude_fix:    1 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:29,113Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2024-04-09 23:22:29,114Z lrauvNc4ToNetcdf.py createSeries():299 longitude_fix:    1 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:29,117Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2024-04-09 23:22:29,118Z lrauvNc4ToNetcdf.py createSeries():299 platform_buoyancy_position:   25 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:29,122Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2024-04-09 23:22:29,127Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2024-04-09 23:22:29,130Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2024-04-09 23:22:29,134Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2024-04-09 23:22:29,145Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2024-04-09 23:22:29,152Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2024-04-09 23:22:29,158Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2024-04-09 23:22:29,162Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_salinity renaming to bin_mean_sea_water_salinity
INFO 2024-04-09 23:22:29,166Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to bin_median_sea_water_salinity
INFO 2024-04-09 23:22:29,170Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_temperature renaming to bin_mean_sea_water_temperature
INFO 2024-04-09 23:22:29,174Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to bin_median_sea_water_temperature
INFO 2024-04-09 23:22:29,176Z lrauvNc4ToNetcdf.py createSeries():299 downwelling_photosynthetic_photon_flux_in_sea_water:   26 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:29,186Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2024-04-09 23:22:29,195Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2024-04-09 23:22:29,204Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2024-04-09 23:22:29,212Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2024-04-09 23:22:29,221Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2024-04-09 23:22:29,229Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg470nm renaming to volumescatcoeff117deg470nm
INFO 2024-04-09 23:22:29,238Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg650nm renaming to volumescatcoeff117deg650nm
INFO 2024-04-09 23:22:29,245Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff470nm renaming to particulatebackscatteringcoeff470nm
INFO 2024-04-09 23:22:29,252Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff650nm renaming to particulatebackscatteringcoeff650nm
INFO 2024-04-09 23:22:29,257Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_mean_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 23:22:29,261Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_median_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 23:22:29,271Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2024-04-09 23:22:29,280Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2024-04-09 23:22:29,284Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group Onboard parameter platform_average_current renaming to health_platform_average_current
INFO 2024-04-09 23:22:29,286Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2024-04-09 23:22:29,288Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   25 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:29,299Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 23:22:29,302Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   25 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:29,312Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 23:22:29,314Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   25 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:29,324Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 23:22:29,355Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle:   25 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:29,630Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 23:22:29,658Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle:   25 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:29,934Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 23:22:29,958Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation:   25 v_t values found before 2020-11-04 03:03:00 and after 2020-11-04 03:51:00
INFO 2024-04-09 23:22:30,237Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 23:22:30,238Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T030345/202011040303_202011040351.nc4
INFO 2024-04-09 23:22:30,357Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 6393 vehicle dead reckoned longitude and latitude values
INFO 2024-04-09 23:22:30,468Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 4 longitude_fix and latititude_fix values from /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T030345/202011040303_202011040351.nc4
INFO 2024-04-09 23:22:30,469Z lrauvNc4ToNetcdf.py nudge_coords():786 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2024-04-09 23:22:30,470Z lrauvNc4ToNetcdf.py nudge_coords():807                  -            -            -         0      0.00              -              -                             -
INFO 2024-04-09 23:22:30,470Z lrauvNc4ToNetcdf.py nudge_coords():840    0:        0.383    0.0000209   -0.0000675       851      5.74          -1.37          -2.18 2020-11-04 03:13:48.110698938
INFO 2024-04-09 23:22:30,473Z lrauvNc4ToNetcdf.py nudge_coords():840    1:        0.368    0.0001654   -0.0000154      3505     23.61          -0.08          -0.12 2020-11-04 03:37:25.317585945
INFO 2024-04-09 23:22:30,475Z lrauvNc4ToNetcdf.py nudge_coords():840    2:        0.355    0.0000754   -0.0000563      2037     13.74          -0.48          -0.76 2020-11-04 03:51:09.835129976
INFO 2024-04-09 23:22:30,478Z lrauvNc4ToNetcdf.py nudge_coords():871    4:            -            -            -         0      0.00              -              -
INFO 2024-04-09 23:22:30,478Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 6393
INFO 2024-04-09 23:22:30,503Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/tethys_ac/between/20201104T020354/20201104T045110/data.csv
INFO 2024-04-09 23:22:30,600Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database
INFO 2024-04-09 23:22:30,605Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'salinity', 'temperature', 'bin_mean_sea_water_salinity', 'bin_median_sea_water_salinity', 'bin_mean_sea_water_temperature', 'bin_median_sea_water_temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'volumescatcoeff117deg470nm', 'volumescatcoeff117deg650nm', 'particulatebackscatteringcoeff470nm', 'particulatebackscatteringcoeff650nm', 'bin_mean_mass_concentration_of_chlorophyll_in_sea_water', 'bin_median_mass_concentration_of_chlorophyll_in_sea_water', 'health_platform_battery_charge', 'health_platform_average_voltage', 'health_platform_average_current', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2024-04-09 23:22:30,961Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S'
INFO 2024-04-09 23:22:31,268Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/tethys/missionlogs/2020/20201103_20201104/20201104T030345/202011040303_202011040351_2S_scieng.nc