INFO 2024-04-09 22:06:05,109Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190117T172207/201901171722_201901171747.nc4 file...
INFO 2024-04-09 22:06:05,110Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/201901171722_201901171747.nc4
INFO 2024-04-09 22:06:05,511Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190117T172207/201901171722_201901171747.nc4
INFO 2024-04-09 22:06:05,539Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   31 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:05,597Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   31 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:05,653Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   32 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:05,713Z lrauvNc4ToNetcdf.py createSeries():299 time     :   32 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:05,764Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   31 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:05,813Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   31 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:05,863Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   32 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:05,913Z lrauvNc4ToNetcdf.py createSeries():299 time     :   32 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:05,962Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   31 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:06,012Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   31 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:06,063Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   32 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:06,113Z lrauvNc4ToNetcdf.py createSeries():299 time     :   32 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:06,163Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   31 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:06,215Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   31 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:06,268Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   32 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:06,320Z lrauvNc4ToNetcdf.py createSeries():299 time     :   32 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:06,362Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes
INFO 2024-04-09 22:06:06,366Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2024-04-09 22:06:06,368Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   32 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:06,375Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2024-04-09 22:06:06,376Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   32 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:06,383Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2024-04-09 22:06:06,384Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   32 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:06,391Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2024-04-09 22:06:06,393Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable sea_water_salinity empty so skipping
INFO 2024-04-09 22:06:06,394Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable sea_water_temperature empty so skipping
INFO 2024-04-09 22:06:06,396Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_mean_sea_water_salinity empty so skipping
INFO 2024-04-09 22:06:06,397Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_median_sea_water_salinity empty so skipping
INFO 2024-04-09 22:06:06,399Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_mean_sea_water_temperature empty so skipping
INFO 2024-04-09 22:06:06,400Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_median_sea_water_temperature empty so skipping
INFO 2024-04-09 22:06:06,402Z lrauvNc4ToNetcdf.py createSeries():299 downwelling_photosynthetic_photon_flux_in_sea_water:   32 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:06,409Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2024-04-09 22:06:06,413Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2024-04-09 22:06:06,416Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2024-04-09 22:06:06,420Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2024-04-09 22:06:06,423Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2024-04-09 22:06:06,426Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg470nm renaming to volumescatcoeff117deg470nm
INFO 2024-04-09 22:06:06,429Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg650nm renaming to volumescatcoeff117deg650nm
INFO 2024-04-09 22:06:06,431Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_mean_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2024-04-09 22:06:06,432Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_median_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2024-04-09 22:06:06,434Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable flow_rate empty so skipping
INFO 2024-04-09 22:06:06,437Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2024-04-09 22:06:06,440Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2024-04-09 22:06:06,444Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2024-04-09 22:06:06,448Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2024-04-09 22:06:06,451Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2024-04-09 22:06:06,462Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2024-04-09 22:06:06,473Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2024-04-09 22:06:06,474Z lrauvNc4ToNetcdf.py createSeries():299 time_fix :    1 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:06,478Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2024-04-09 22:06:06,479Z lrauvNc4ToNetcdf.py createSeries():299 latitude_fix:    1 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:06,482Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2024-04-09 22:06:06,484Z lrauvNc4ToNetcdf.py createSeries():299 longitude_fix:    1 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:06,487Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2024-04-09 22:06:06,512Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle:   32 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:06,550Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:06:06,568Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle:   32 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:06,607Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:06:06,626Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation:   32 v_t values found before 2019-01-17 17:22:00 and after 2019-01-17 17:47:00
INFO 2024-04-09 22:06:06,665Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:06:06,665Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190117T172207/201901171722_201901171747.nc4
INFO 2024-04-09 22:06:06,763Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 2415 vehicle dead reckoned longitude and latitude values
INFO 2024-04-09 22:06:06,845Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 3 longitude_fix and latititude_fix values from /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190117T172207/201901171722_201901171747.nc4
INFO 2024-04-09 22:06:06,846Z lrauvNc4ToNetcdf.py nudge_coords():786 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2024-04-09 22:06:06,846Z lrauvNc4ToNetcdf.py nudge_coords():807                  -            -            -         0      0.00              -              -                             -
INFO 2024-04-09 22:06:06,847Z lrauvNc4ToNetcdf.py nudge_coords():840    0:        0.332   -0.0004323    0.0001947      1235      9.57           2.36           3.77 2019-01-17 17:38:51.690751076
INFO 2024-04-09 22:06:06,849Z lrauvNc4ToNetcdf.py nudge_coords():840    1:        0.342    0.0221667   -0.0004593      1177      8.36          -6.37         -10.18 2019-01-17 17:47:13.686346054
INFO 2024-04-09 22:06:06,851Z lrauvNc4ToNetcdf.py nudge_coords():871    3:            -            -            -         2      0.02              -              -
INFO 2024-04-09 22:06:06,852Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 2414
INFO 2024-04-09 22:06:06,871Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/tethys_ac/between/20190117T162219/20190117T184715/data.csv
INFO 2024-04-09 22:06:06,977Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database
INFO 2024-04-09 22:06:06,981Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'volumescatcoeff117deg470nm', 'volumescatcoeff117deg650nm', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2024-04-09 22:06:07,441Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S'
INFO 2024-04-09 22:06:07,919Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190117T172207/201901171722_201901171747_2S_scieng.nc