INFO 2024-04-09 22:05:57,657Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190117T080322/201901170803_201901171719.nc4 file... INFO 2024-04-09 22:05:57,657Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/201901170803_201901171719.nc4 INFO 2024-04-09 22:05:58,332Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190117T080322/201901170803_201901171719.nc4 INFO 2024-04-09 22:05:58,377Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:05:58,523Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:05:58,666Z lrauvNc4ToNetcdf.py createSeries():299 depth : 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:05:58,811Z lrauvNc4ToNetcdf.py createSeries():299 time : 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:05:58,946Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:05:59,063Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:05:59,176Z lrauvNc4ToNetcdf.py createSeries():299 depth : 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:05:59,289Z lrauvNc4ToNetcdf.py createSeries():299 time : 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:05:59,403Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:05:59,516Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:05:59,610Z lrauvNc4ToNetcdf.py createSeries():299 depth : 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:05:59,706Z lrauvNc4ToNetcdf.py createSeries():299 time : 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:05:59,804Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:05:59,898Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:05:59,988Z lrauvNc4ToNetcdf.py createSeries():299 depth : 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:06:00,099Z lrauvNc4ToNetcdf.py createSeries():299 time : 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:06:00,172Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes INFO 2024-04-09 22:06:00,189Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator INFO 2024-04-09 22:06:00,203Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:06:00,281Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator INFO 2024-04-09 22:06:00,294Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:06:00,368Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator INFO 2024-04-09 22:06:00,381Z lrauvNc4ToNetcdf.py createSeries():299 depth : 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:06:00,452Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator INFO 2024-04-09 22:06:00,483Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity INFO 2024-04-09 22:06:00,512Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature INFO 2024-04-09 22:06:00,524Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_salinity renaming to bin_mean_sea_water_salinity INFO 2024-04-09 22:06:00,537Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to bin_median_sea_water_salinity INFO 2024-04-09 22:06:00,549Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_temperature renaming to bin_mean_sea_water_temperature INFO 2024-04-09 22:06:00,562Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to bin_median_sea_water_temperature INFO 2024-04-09 22:06:00,576Z lrauvNc4ToNetcdf.py createSeries():299 downwelling_photosynthetic_photon_flux_in_sea_water: 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:06:00,633Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR INFO 2024-04-09 22:06:00,690Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2024-04-09 22:06:00,744Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter OutputChl renaming to chl INFO 2024-04-09 22:06:00,799Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470 INFO 2024-04-09 22:06:00,856Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650 INFO 2024-04-09 22:06:00,910Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg470nm renaming to volumescatcoeff117deg470nm INFO 2024-04-09 22:06:00,964Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg650nm renaming to volumescatcoeff117deg650nm INFO 2024-04-09 22:06:01,004Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff470nm renaming to particulatebackscatteringcoeff470nm INFO 2024-04-09 22:06:01,045Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff650nm renaming to particulatebackscatteringcoeff650nm INFO 2024-04-09 22:06:01,058Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_mean_mass_concentration_of_chlorophyll_in_sea_water INFO 2024-04-09 22:06:01,071Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_median_mass_concentration_of_chlorophyll_in_sea_water INFO 2024-04-09 22:06:01,080Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2024-04-09 22:06:01,093Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle INFO 2024-04-09 22:06:01,099Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2024-04-09 22:06:01,101Z lrauvNc4ToNetcdf.py createSeries():299 platform_rudder_angle: 1 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:06:01,114Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2024-04-09 22:06:01,184Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate INFO 2024-04-09 22:06:01,197Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2024-04-09 22:06:01,210Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage INFO 2024-04-09 22:06:01,215Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2024-04-09 22:06:01,220Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2024-04-09 22:06:01,225Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude INFO 2024-04-09 22:06:01,268Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle: 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:06:01,373Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 22:06:01,418Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle: 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:06:01,526Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 22:06:01,569Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation: 7 v_t values found before 2019-01-17 08:03:00 and after 2019-01-17 17:19:00 INFO 2024-04-09 22:06:01,672Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 22:06:01,673Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190117T080322/201901170803_201901171719.nc4 INFO 2024-04-09 22:06:01,891Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 80265 vehicle dead reckoned longitude and latitude values INFO 2024-04-09 22:06:01,995Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 14 longitude_fix and latititude_fix values from /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190117T080322/201901170803_201901171719.nc4 INFO 2024-04-09 22:06:01,995Z lrauvNc4ToNetcdf.py nudge_coords():786 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2024-04-09 22:06:01,996Z lrauvNc4ToNetcdf.py nudge_coords():807 - - - 0 0.00 - - - INFO 2024-04-09 22:06:01,998Z lrauvNc4ToNetcdf.py nudge_coords():840 0: 0.322 0.0020180 0.0012546 1690 11.36 12.36 20.47 2019-01-17 08:25:21.809231997 INFO 2024-04-09 22:06:02,001Z lrauvNc4ToNetcdf.py nudge_coords():840 1: 0.344 0.0002737 0.0001552 181 1.38 12.57 20.81 2019-01-17 08:26:45.113428116 INFO 2024-04-09 22:06:02,004Z lrauvNc4ToNetcdf.py nudge_coords():840 2: 0.356 0.0053410 0.0022560 9711 64.75 3.95 6.46 2019-01-17 09:31:30.726625919 INFO 2024-04-09 22:06:02,009Z lrauvNc4ToNetcdf.py nudge_coords():840 3: 0.350 0.0001775 0.0000887 141 0.99 10.13 16.57 2019-01-17 09:32:30.633825064 INFO 2024-04-09 22:06:02,012Z lrauvNc4ToNetcdf.py nudge_coords():840 4: 0.356 0.0031905 -0.0000854 9951 66.55 -0.15 -0.24 2019-01-17 10:39:03.984613895 INFO 2024-04-09 22:06:02,018Z lrauvNc4ToNetcdf.py nudge_coords():840 5: 0.352 0.0031861 0.0003416 11536 78.84 0.50 0.80 2019-01-17 11:57:54.735665083 INFO 2024-04-09 22:06:02,024Z lrauvNc4ToNetcdf.py nudge_coords():840 6: 0.333 -0.0000788 0.0000033 26 0.36 1.07 1.71 2019-01-17 11:58:16.772989988 INFO 2024-04-09 22:06:02,027Z lrauvNc4ToNetcdf.py nudge_coords():840 7: 0.336 0.0009653 0.0002274 9668 64.78 0.40 0.65 2019-01-17 13:03:03.756995916 INFO 2024-04-09 22:06:02,033Z lrauvNc4ToNetcdf.py nudge_coords():840 8: 0.344 -0.0000570 0.0000000 39 0.45 0.00 0.00 2019-01-17 13:03:30.999584913 INFO 2024-04-09 22:06:02,036Z lrauvNc4ToNetcdf.py nudge_coords():840 9: 0.328 0.0013869 0.0000946 16246 111.64 0.10 0.16 2019-01-17 14:55:10.076071978 INFO 2024-04-09 22:06:02,042Z lrauvNc4ToNetcdf.py nudge_coords():840 10: 0.365 0.0001799 -0.0004072 11030 73.87 -0.63 -1.02 2019-01-17 16:09:02.693346024 INFO 2024-04-09 22:06:02,047Z lrauvNc4ToNetcdf.py nudge_coords():840 11: 0.337 0.0002853 0.0004930 1649 11.52 4.93 7.93 2019-01-17 16:20:34.086860895 INFO 2024-04-09 22:06:02,050Z lrauvNc4ToNetcdf.py nudge_coords():840 12: 0.319 -0.0000125 -0.0000323 208 1.59 -2.34 -3.77 2019-01-17 16:22:09.841197968 INFO 2024-04-09 22:06:02,054Z lrauvNc4ToNetcdf.py nudge_coords():871 14: - - - 8188 56.86 - - INFO 2024-04-09 22:06:02,054Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 80264 INFO 2024-04-09 22:06:02,081Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/tethys_ac/between/20190117T070333/20190117T181902/data.csv INFO 2024-04-09 22:06:02,183Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database WARNING 2024-04-09 22:06:02,194Z lrauvNc4ToNetcdf.py processResampleNc4File():1379 Interpolated 'time' variable has 1 repeated values at indices [0] INFO 2024-04-09 22:06:02,195Z lrauvNc4ToNetcdf.py processResampleNc4File():1380 Overwriting interpolated repeated values with time's index values INFO 2024-04-09 22:06:02,195Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'salinity', 'temperature', 'bin_mean_sea_water_salinity', 'bin_median_sea_water_salinity', 'bin_mean_sea_water_temperature', 'bin_median_sea_water_temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'volumescatcoeff117deg470nm', 'volumescatcoeff117deg650nm', 'particulatebackscatteringcoeff470nm', 'particulatebackscatteringcoeff650nm', 'bin_mean_mass_concentration_of_chlorophyll_in_sea_water', 'bin_median_mass_concentration_of_chlorophyll_in_sea_water', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2024-04-09 22:06:02,802Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S' INFO 2024-04-09 22:06:03,252Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190117T080322/201901170803_201901171719_2S_scieng.nc