INFO 2024-04-09 22:05:40,805Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190116T011207/201901160112_201901160221.nc4 file...
INFO 2024-04-09 22:05:40,806Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/201901160112_201901160221.nc4
INFO 2024-04-09 22:05:41,216Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190116T011207/201901160112_201901160221.nc4
INFO 2024-04-09 22:05:42,276Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes
INFO 2024-04-09 22:05:42,281Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2024-04-09 22:05:42,297Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2024-04-09 22:05:42,312Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2024-04-09 22:05:42,327Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2024-04-09 22:05:42,328Z lrauvNc4ToNetcdf.py createSeries():299 sea_water_salinity:   33 v_t values found before 2019-01-16 01:12:00 and after 2019-01-16 02:21:00
INFO 2024-04-09 22:05:42,334Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2024-04-09 22:05:42,335Z lrauvNc4ToNetcdf.py createSeries():299 sea_water_temperature:   32 v_t values found before 2019-01-16 01:12:00 and after 2019-01-16 02:21:00
INFO 2024-04-09 22:05:42,340Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2024-04-09 22:05:42,341Z lrauvNc4ToNetcdf.py createSeries():299 bin_mean_sea_water_salinity:    6 v_t values found before 2019-01-16 01:12:00 and after 2019-01-16 02:21:00
INFO 2024-04-09 22:05:42,345Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_salinity renaming to bin_mean_sea_water_salinity
INFO 2024-04-09 22:05:42,346Z lrauvNc4ToNetcdf.py createSeries():299 bin_median_sea_water_salinity:    6 v_t values found before 2019-01-16 01:12:00 and after 2019-01-16 02:21:00
INFO 2024-04-09 22:05:42,350Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to bin_median_sea_water_salinity
INFO 2024-04-09 22:05:42,352Z lrauvNc4ToNetcdf.py createSeries():299 bin_mean_sea_water_temperature:    6 v_t values found before 2019-01-16 01:12:00 and after 2019-01-16 02:21:00
INFO 2024-04-09 22:05:42,355Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_temperature renaming to bin_mean_sea_water_temperature
INFO 2024-04-09 22:05:42,357Z lrauvNc4ToNetcdf.py createSeries():299 bin_median_sea_water_temperature:    6 v_t values found before 2019-01-16 01:12:00 and after 2019-01-16 02:21:00
INFO 2024-04-09 22:05:42,360Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to bin_median_sea_water_temperature
INFO 2024-04-09 22:05:42,375Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2024-04-09 22:05:42,376Z lrauvNc4ToNetcdf.py createSeries():299 mass_concentration_of_chlorophyll_in_sea_water:   64 v_t values found before 2019-01-16 01:12:00 and after 2019-01-16 02:21:00
INFO 2024-04-09 22:05:42,382Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2024-04-09 22:05:42,384Z lrauvNc4ToNetcdf.py createSeries():299 OutputChl:   64 v_t values found before 2019-01-16 01:12:00 and after 2019-01-16 02:21:00
INFO 2024-04-09 22:05:42,389Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2024-04-09 22:05:42,391Z lrauvNc4ToNetcdf.py createSeries():299 Output470:   64 v_t values found before 2019-01-16 01:12:00 and after 2019-01-16 02:21:00
INFO 2024-04-09 22:05:42,396Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2024-04-09 22:05:42,398Z lrauvNc4ToNetcdf.py createSeries():299 Output650:   64 v_t values found before 2019-01-16 01:12:00 and after 2019-01-16 02:21:00
INFO 2024-04-09 22:05:42,403Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2024-04-09 22:05:42,405Z lrauvNc4ToNetcdf.py createSeries():299 VolumeScatCoeff117deg470nm:   64 v_t values found before 2019-01-16 01:12:00 and after 2019-01-16 02:21:00
INFO 2024-04-09 22:05:42,410Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg470nm renaming to volumescatcoeff117deg470nm
INFO 2024-04-09 22:05:42,412Z lrauvNc4ToNetcdf.py createSeries():299 VolumeScatCoeff117deg650nm:   64 v_t values found before 2019-01-16 01:12:00 and after 2019-01-16 02:21:00
INFO 2024-04-09 22:05:42,418Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg650nm renaming to volumescatcoeff117deg650nm
INFO 2024-04-09 22:05:42,419Z lrauvNc4ToNetcdf.py createSeries():299 ParticulateBackscatteringCoeff470nm:   64 v_t values found before 2019-01-16 01:12:00 and after 2019-01-16 02:21:00
INFO 2024-04-09 22:05:42,425Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff470nm renaming to particulatebackscatteringcoeff470nm
INFO 2024-04-09 22:05:42,426Z lrauvNc4ToNetcdf.py createSeries():299 ParticulateBackscatteringCoeff650nm:   64 v_t values found before 2019-01-16 01:12:00 and after 2019-01-16 02:21:00
INFO 2024-04-09 22:05:42,431Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff650nm renaming to particulatebackscatteringcoeff650nm
INFO 2024-04-09 22:05:42,433Z lrauvNc4ToNetcdf.py createSeries():299 bin_mean_mass_concentration_of_chlorophyll_in_sea_water:    6 v_t values found before 2019-01-16 01:12:00 and after 2019-01-16 02:21:00
INFO 2024-04-09 22:05:42,437Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_mean_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 22:05:42,439Z lrauvNc4ToNetcdf.py createSeries():299 bin_median_mass_concentration_of_chlorophyll_in_sea_water:    6 v_t values found before 2019-01-16 01:12:00 and after 2019-01-16 02:21:00
INFO 2024-04-09 22:05:42,444Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_median_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 22:05:42,448Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2024-04-09 22:05:42,452Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2024-04-09 22:05:42,456Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2024-04-09 22:05:42,460Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2024-04-09 22:05:42,464Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2024-04-09 22:05:42,476Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2024-04-09 22:05:42,486Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2024-04-09 22:05:42,490Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2024-04-09 22:05:42,494Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2024-04-09 22:05:42,497Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2024-04-09 22:05:42,573Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:05:42,645Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:05:42,722Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:05:42,723Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190116T011207/201901160112_201901160221.nc4
INFO 2024-04-09 22:05:42,899Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 9050 vehicle dead reckoned longitude and latitude values
INFO 2024-04-09 22:05:43,053Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 4 longitude_fix and latititude_fix values from /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190116T011207/201901160112_201901160221.nc4
INFO 2024-04-09 22:05:43,053Z lrauvNc4ToNetcdf.py nudge_coords():786 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2024-04-09 22:05:43,054Z lrauvNc4ToNetcdf.py nudge_coords():807                  -            -            -         0      0.00              -              -                             -
INFO 2024-04-09 22:05:43,055Z lrauvNc4ToNetcdf.py nudge_coords():840    0:        0.351    0.0051682    0.0017317      2129     14.60          13.34          21.98 2019-01-16 01:34:01.214670897
INFO 2024-04-09 22:05:43,058Z lrauvNc4ToNetcdf.py nudge_coords():840    1:        0.342   -0.0025248    0.0025245      1325      8.89          32.03          52.61 2019-01-16 01:42:55.088303089
INFO 2024-04-09 22:05:43,061Z lrauvNc4ToNetcdf.py nudge_coords():840    2:        0.351    0.0014252    0.0016840      1510     10.12          18.80          30.82 2019-01-16 01:53:02.938736916
INFO 2024-04-09 22:05:43,064Z lrauvNc4ToNetcdf.py nudge_coords():871    4:            -            -            -      4085     27.55              -              -
INFO 2024-04-09 22:05:43,064Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 9049
INFO 2024-04-09 22:05:43,098Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/tethys_ac/between/20190116T001217/20190116T032036/data.csv
INFO 2024-04-09 22:05:43,200Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database
INFO 2024-04-09 22:05:43,205Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'salinity', 'temperature', 'bin_mean_sea_water_salinity', 'bin_median_sea_water_salinity', 'bin_mean_sea_water_temperature', 'bin_median_sea_water_temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'volumescatcoeff117deg470nm', 'volumescatcoeff117deg650nm', 'particulatebackscatteringcoeff470nm', 'particulatebackscatteringcoeff650nm', 'bin_mean_mass_concentration_of_chlorophyll_in_sea_water', 'bin_median_mass_concentration_of_chlorophyll_in_sea_water', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2024-04-09 22:05:43,658Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S'
INFO 2024-04-09 22:05:44,000Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190116T011207/201901160112_201901160221_2S_scieng.nc