INFO 2020-05-21 18:08:33,567Z lrauvNc4ToNetcdf.py processResampleNc4File():994 Reading /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190116T011207/201901160112_201901160221.nc4 file...
INFO 2020-05-21 18:08:33,568Z lrauvNc4ToNetcdf.py processResampleNc4File():995 After copying to /tmp/201901160112_201901160221.nc4
INFO 2020-05-21 18:08:34,520Z lrauvNc4ToNetcdf.py processResampleNc4File():997 Read file /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190116T011207/201901160112_201901160221.nc4
INFO 2020-05-21 18:08:37,673Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Creating t variable of the time indexes
WARNING 2020-05-21 18:08:37,679Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190116T011207/201901160112_201901160221.nc4
WARNING 2020-05-21 18:08:37,679Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 'longitude' not in /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190116T011207/201901160112_201901160221.nc4
WARNING 2020-05-21 18:08:37,679Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 'latitude' not in /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190116T011207/201901160112_201901160221.nc4
WARNING 2020-05-21 18:08:37,679Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 'depth' not in /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190116T011207/201901160112_201901160221.nc4
INFO 2020-05-21 18:08:37,682Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2020-05-21 18:08:37,852Z lrauvNc4ToNetcdf.py processResampleNc4File():1083 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2020-05-21 18:08:38,023Z lrauvNc4ToNetcdf.py processResampleNc4File():1083 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2020-05-21 18:08:38,193Z lrauvNc4ToNetcdf.py processResampleNc4File():1083 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2020-05-21 18:08:38,199Z lrauvNc4ToNetcdf.py processResampleNc4File():1083 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-05-21 18:08:38,206Z lrauvNc4ToNetcdf.py processResampleNc4File():1083 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-05-21 18:08:38,213Z lrauvNc4ToNetcdf.py processResampleNc4File():1083 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-05-21 18:08:38,219Z lrauvNc4ToNetcdf.py processResampleNc4File():1083 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-05-21 18:08:38,225Z lrauvNc4ToNetcdf.py processResampleNc4File():1083 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-05-21 18:08:38,236Z lrauvNc4ToNetcdf.py processResampleNc4File():1083 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2020-05-21 18:08:38,246Z lrauvNc4ToNetcdf.py processResampleNc4File():1083 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2020-05-21 18:08:38,252Z lrauvNc4ToNetcdf.py processResampleNc4File():1083 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-05-21 18:08:38,257Z lrauvNc4ToNetcdf.py processResampleNc4File():1083 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-05-21 18:08:38,263Z lrauvNc4ToNetcdf.py processResampleNc4File():1083 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2020-05-21 18:08:38,263Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 'platform_average_current' not in /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190116T011207/201901160112_201901160221.nc4
DEBUG 2020-05-21 18:08:38,470Z lrauvNc4ToNetcdf.py createNav():492 calling ts.resample() for pitch
DEBUG 2020-05-21 18:08:38,478Z lrauvNc4ToNetcdf.py createNav():494 calling self.interpolate() for pitch
INFO 2020-05-21 18:08:38,479Z lrauvNc4ToNetcdf.py createNav():504 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
DEBUG 2020-05-21 18:08:38,683Z lrauvNc4ToNetcdf.py createNav():492 calling ts.resample() for roll
DEBUG 2020-05-21 18:08:38,690Z lrauvNc4ToNetcdf.py createNav():494 calling self.interpolate() for roll
INFO 2020-05-21 18:08:38,691Z lrauvNc4ToNetcdf.py createNav():504 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
DEBUG 2020-05-21 18:08:38,893Z lrauvNc4ToNetcdf.py createNav():492 calling ts.resample() for yaw
DEBUG 2020-05-21 18:08:38,900Z lrauvNc4ToNetcdf.py createNav():494 calling self.interpolate() for yaw
INFO 2020-05-21 18:08:38,901Z lrauvNc4ToNetcdf.py createNav():504 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-05-21 18:08:38,902Z lrauvNc4ToNetcdf.py nudge_coords():624 /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190116T011207/201901160112_201901160221.nc4
DEBUG 2020-05-21 18:08:39,044Z lrauvNc4ToNetcdf.py var_series():612 longitude: rad_to_deg = True
DEBUG 2020-05-21 18:08:39,183Z lrauvNc4ToNetcdf.py var_series():612 latitude: rad_to_deg = True
DEBUG 2020-05-21 18:08:39,220Z lrauvNc4ToNetcdf.py var_series():612 longitude_fix: rad_to_deg = True
DEBUG 2020-05-21 18:08:39,256Z lrauvNc4ToNetcdf.py var_series():612 latitude_fix: rad_to_deg = True
INFO 2020-05-21 18:08:39,257Z lrauvNc4ToNetcdf.py nudge_coords():642 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-05-21 18:08:39,258Z lrauvNc4ToNetcdf.py nudge_coords():658                  -            -            -         0      0.00              -              -                             -
INFO 2020-05-21 18:08:39,260Z lrauvNc4ToNetcdf.py nudge_coords():680    0:        0.351    0.0051682    0.0017317      2129     14.60          13.34          21.98 2019-01-16 01:34:01.214670897
INFO 2020-05-21 18:08:39,266Z lrauvNc4ToNetcdf.py nudge_coords():680    1:        0.342   -0.0025248    0.0025245      1325      8.89          32.03          52.61 2019-01-16 01:42:55.088303089
INFO 2020-05-21 18:08:39,271Z lrauvNc4ToNetcdf.py nudge_coords():680    2:        0.351    0.0014252    0.0016840      1510     10.12          18.80          30.82 2019-01-16 01:53:02.938736916
INFO 2020-05-21 18:08:39,276Z lrauvNc4ToNetcdf.py nudge_coords():710    4:            -            -            -      4086     27.56              -              -
INFO 2020-05-21 18:08:39,276Z lrauvNc4ToNetcdf.py nudge_coords():714 Points in final series = 9050
DEBUG 2020-05-21 18:08:39,277Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():540 Constructing trackingdb url to 3600 seconds beyond time range of file
INFO 2020-05-21 18:08:39,293Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():548 http://odss.mbari.org/trackingdb/position/tethys_ac/between/20190116T001217/20190116T032036/data.csv
INFO 2020-05-21 18:08:39,317Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():571 Found 0 position values from the Tracking database
INFO 2020-05-21 18:08:39,320Z lrauvNc4ToNetcdf.py processResampleNc4File():1141 ['pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
DEBUG 2020-05-21 18:08:39,322Z lrauvNc4ToNetcdf.py write_netcdf():130 Creating netCDF file /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190116T011207/201901160112_201901160221_2S_eng.nc
DEBUG 2020-05-21 18:08:39,381Z lrauvNc4ToNetcdf.py write_netcdf():155 Adding in record variable fix_time
DEBUG 2020-05-21 18:08:39,405Z lrauvNc4ToNetcdf.py write_netcdf():155 Adding in record variable time
DEBUG 2020-05-21 18:08:39,417Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable pose_longitude_DeadReckonUsingSpeedCalculator
DEBUG 2020-05-21 18:08:39,428Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable pose_latitude_DeadReckonUsingSpeedCalculator
DEBUG 2020-05-21 18:08:39,439Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable pose_depth_DeadReckonUsingSpeedCalculator
DEBUG 2020-05-21 18:08:39,450Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable control_inputs_buoyancy_position
DEBUG 2020-05-21 18:08:39,460Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable control_inputs_elevator_angle
DEBUG 2020-05-21 18:08:39,472Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable control_inputs_mass_position
DEBUG 2020-05-21 18:08:39,482Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable control_inputs_rudder_angle
DEBUG 2020-05-21 18:08:39,499Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable control_inputs_propeller_rotation_rate
DEBUG 2020-05-21 18:08:39,510Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable health_platform_battery_charge
DEBUG 2020-05-21 18:08:39,527Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable health_platform_average_voltage
DEBUG 2020-05-21 18:08:39,539Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable fix_latitude
DEBUG 2020-05-21 18:08:39,550Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable fix_longitude
DEBUG 2020-05-21 18:08:39,561Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable pitch
DEBUG 2020-05-21 18:08:39,571Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable roll
DEBUG 2020-05-21 18:08:39,581Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable yaw
DEBUG 2020-05-21 18:08:39,592Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable latitude
DEBUG 2020-05-21 18:08:39,604Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable longitude
DEBUG 2020-05-21 18:08:39,614Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable depth
DEBUG 2020-05-21 18:08:39,625Z lrauvNc4ToNetcdf.py write_netcdf():174 Adding in global metadata
INFO 2020-05-21 18:08:39,836Z lrauvNc4ToNetcdf.py processResampleNc4File():1144 Wrote /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190116T011207/201901160112_201901160221_2S_eng.nc