INFO 2024-04-09 22:05:35,399Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190115T190852/201901151909_201901160112.nc4 file...
INFO 2024-04-09 22:05:35,399Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/201901151909_201901160112.nc4
INFO 2024-04-09 22:05:35,827Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190115T190852/201901151909_201901160112.nc4
INFO 2024-04-09 22:05:35,869Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:36,008Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:36,147Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:36,292Z lrauvNc4ToNetcdf.py createSeries():299 time     :   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:36,430Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:36,561Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:36,692Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:36,823Z lrauvNc4ToNetcdf.py createSeries():299 time     :   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:36,953Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:37,075Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:37,192Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:37,306Z lrauvNc4ToNetcdf.py createSeries():299 time     :   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:37,434Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:37,549Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:37,647Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:37,765Z lrauvNc4ToNetcdf.py createSeries():299 time     :   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:37,846Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes
INFO 2024-04-09 22:05:37,861Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator
INFO 2024-04-09 22:05:37,870Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:37,919Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2024-04-09 22:05:37,928Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:37,977Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2024-04-09 22:05:37,986Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:38,036Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2024-04-09 22:05:38,062Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2024-04-09 22:05:38,085Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2024-04-09 22:05:38,094Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_salinity renaming to bin_mean_sea_water_salinity
INFO 2024-04-09 22:05:38,104Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to bin_median_sea_water_salinity
INFO 2024-04-09 22:05:38,114Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_temperature renaming to bin_mean_sea_water_temperature
INFO 2024-04-09 22:05:38,123Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to bin_median_sea_water_temperature
INFO 2024-04-09 22:05:38,132Z lrauvNc4ToNetcdf.py createSeries():299 downwelling_photosynthetic_photon_flux_in_sea_water:   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:38,174Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2024-04-09 22:05:38,215Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2024-04-09 22:05:38,253Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2024-04-09 22:05:38,294Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2024-04-09 22:05:38,334Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2024-04-09 22:05:38,374Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg470nm renaming to volumescatcoeff117deg470nm
INFO 2024-04-09 22:05:38,415Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg650nm renaming to volumescatcoeff117deg650nm
INFO 2024-04-09 22:05:38,447Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff470nm renaming to particulatebackscatteringcoeff470nm
INFO 2024-04-09 22:05:38,478Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff650nm renaming to particulatebackscatteringcoeff650nm
INFO 2024-04-09 22:05:38,488Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_mean_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 22:05:38,497Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_median_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 22:05:38,504Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2024-04-09 22:05:38,514Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2024-04-09 22:05:38,520Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2024-04-09 22:05:38,533Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2024-04-09 22:05:38,574Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2024-04-09 22:05:38,588Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2024-04-09 22:05:38,600Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2024-04-09 22:05:38,606Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2024-04-09 22:05:38,610Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2024-04-09 22:05:38,615Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2024-04-09 22:05:38,656Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle:   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:38,765Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:05:38,805Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle:   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:38,908Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:05:38,949Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation:   15 v_t values found before 2019-01-15 19:09:00 and after 2019-01-16 01:12:00
INFO 2024-04-09 22:05:39,051Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:05:39,053Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190115T190852/201901151909_201901160112.nc4
INFO 2024-04-09 22:05:39,271Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 52892 vehicle dead reckoned longitude and latitude values
INFO 2024-04-09 22:05:39,411Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 10 longitude_fix and latititude_fix values from /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190115T190852/201901151909_201901160112.nc4
INFO 2024-04-09 22:05:39,412Z lrauvNc4ToNetcdf.py nudge_coords():786 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2024-04-09 22:05:39,413Z lrauvNc4ToNetcdf.py nudge_coords():807                  -            -            -         0      0.00              -              -                             -
INFO 2024-04-09 22:05:39,415Z lrauvNc4ToNetcdf.py nudge_coords():840    0:        0.358   -0.0017179    0.0013928      2100     14.38          11.54          17.95 2019-01-15 19:30:21.165724993
INFO 2024-04-09 22:05:39,418Z lrauvNc4ToNetcdf.py nudge_coords():840    1:        0.353   -0.0003873    0.0000420      1035      7.11           0.70           1.10 2019-01-15 19:37:27.917704105
INFO 2024-04-09 22:05:39,421Z lrauvNc4ToNetcdf.py nudge_coords():840    2:        0.349   -0.0011404    0.0027647      6589     43.95           7.39          11.66 2019-01-15 20:21:25.189925909
INFO 2024-04-09 22:05:39,426Z lrauvNc4ToNetcdf.py nudge_coords():840    3:        0.335   -0.0004845    0.0008165       881      6.50          14.76          23.26 2019-01-15 20:27:55.807140112
INFO 2024-04-09 22:05:39,430Z lrauvNc4ToNetcdf.py nudge_coords():840    4:        0.349   -0.0005456    0.0026795      5721     38.59           8.09          12.87 2019-01-15 21:06:31.400795937
INFO 2024-04-09 22:05:39,434Z lrauvNc4ToNetcdf.py nudge_coords():840    5:        0.365   -0.0001299    0.0027707      5577     37.48           8.54          13.70 2019-01-15 21:44:00.858439922
INFO 2024-04-09 22:05:39,438Z lrauvNc4ToNetcdf.py nudge_coords():840    6:        0.351   -0.0000783    0.0002207       232      1.75          14.56          23.36 2019-01-15 21:45:46.317677975
INFO 2024-04-09 22:05:39,442Z lrauvNc4ToNetcdf.py nudge_coords():840    7:        0.358   -6.0931413    2.0403266     22745    152.44        1133.87        2480.19 2019-01-16 00:18:12.957433939
INFO 2024-04-09 22:05:39,449Z lrauvNc4ToNetcdf.py nudge_coords():840    8:        0.352    0.0034299    0.0033392        50      0.33         860.38        1894.19 2019-01-16 00:18:32.970573902
INFO 2024-04-09 22:05:39,454Z lrauvNc4ToNetcdf.py nudge_coords():871   10:            -            -            -      7961     53.53              -              -
INFO 2024-04-09 22:05:39,454Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 52891
INFO 2024-04-09 22:05:39,487Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/tethys_ac/between/20190115T180902/20190116T021205/data.csv
INFO 2024-04-09 22:05:39,608Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database
INFO 2024-04-09 22:05:39,620Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'salinity', 'temperature', 'bin_mean_sea_water_salinity', 'bin_median_sea_water_salinity', 'bin_mean_sea_water_temperature', 'bin_median_sea_water_temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'volumescatcoeff117deg470nm', 'volumescatcoeff117deg650nm', 'particulatebackscatteringcoeff470nm', 'particulatebackscatteringcoeff650nm', 'bin_mean_mass_concentration_of_chlorophyll_in_sea_water', 'bin_median_mass_concentration_of_chlorophyll_in_sea_water', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2024-04-09 22:05:40,142Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S'
INFO 2024-04-09 22:05:40,505Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190115T190852/201901151909_201901160112_2S_scieng.nc