INFO 2024-04-09 22:05:29,628Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190115T180150/201901151802_201901151908.nc4 file...
INFO 2024-04-09 22:05:29,628Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/201901151802_201901151908.nc4
INFO 2024-04-09 22:05:30,068Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190115T180150/201901151802_201901151908.nc4
INFO 2024-04-09 22:05:30,107Z lrauvNc4ToNetcdf.py createSeries():299 latitude :  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:30,226Z lrauvNc4ToNetcdf.py createSeries():299 longitude:  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:30,345Z lrauvNc4ToNetcdf.py createSeries():299 depth    :  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:30,464Z lrauvNc4ToNetcdf.py createSeries():299 time     :  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:30,583Z lrauvNc4ToNetcdf.py createSeries():299 latitude :  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:30,706Z lrauvNc4ToNetcdf.py createSeries():299 longitude:  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:30,822Z lrauvNc4ToNetcdf.py createSeries():299 depth    :  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:30,934Z lrauvNc4ToNetcdf.py createSeries():299 time     :  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:31,048Z lrauvNc4ToNetcdf.py createSeries():299 latitude :  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:31,162Z lrauvNc4ToNetcdf.py createSeries():299 longitude:  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:31,278Z lrauvNc4ToNetcdf.py createSeries():299 depth    :  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:31,412Z lrauvNc4ToNetcdf.py createSeries():299 time     :  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:31,537Z lrauvNc4ToNetcdf.py createSeries():299 latitude :  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:31,656Z lrauvNc4ToNetcdf.py createSeries():299 longitude:  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:31,771Z lrauvNc4ToNetcdf.py createSeries():299 depth    :  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:31,892Z lrauvNc4ToNetcdf.py createSeries():299 time     :  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:31,969Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes
INFO 2024-04-09 22:05:31,974Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2024-04-09 22:05:31,977Z lrauvNc4ToNetcdf.py createSeries():299 longitude:  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:31,993Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2024-04-09 22:05:31,996Z lrauvNc4ToNetcdf.py createSeries():299 latitude :  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:32,011Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2024-04-09 22:05:32,014Z lrauvNc4ToNetcdf.py createSeries():299 depth    :  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:32,028Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2024-04-09 22:05:32,033Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2024-04-09 22:05:32,038Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2024-04-09 22:05:32,042Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_salinity renaming to bin_mean_sea_water_salinity
INFO 2024-04-09 22:05:32,046Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to bin_median_sea_water_salinity
INFO 2024-04-09 22:05:32,049Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_temperature renaming to bin_mean_sea_water_temperature
INFO 2024-04-09 22:05:32,053Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to bin_median_sea_water_temperature
INFO 2024-04-09 22:05:32,056Z lrauvNc4ToNetcdf.py createSeries():299 downwelling_photosynthetic_photon_flux_in_sea_water:  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:32,069Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2024-04-09 22:05:32,074Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2024-04-09 22:05:32,079Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2024-04-09 22:05:32,084Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2024-04-09 22:05:32,089Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2024-04-09 22:05:32,094Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg470nm renaming to volumescatcoeff117deg470nm
INFO 2024-04-09 22:05:32,099Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg650nm renaming to volumescatcoeff117deg650nm
INFO 2024-04-09 22:05:32,104Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff470nm renaming to particulatebackscatteringcoeff470nm
INFO 2024-04-09 22:05:32,108Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff650nm renaming to particulatebackscatteringcoeff650nm
INFO 2024-04-09 22:05:32,113Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_mean_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 22:05:32,117Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_median_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 22:05:32,122Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsUBAT parameter flow_rate renaming to ubat_flow_rate
INFO 2024-04-09 22:05:32,126Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2024-04-09 22:05:32,130Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2024-04-09 22:05:32,134Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2024-04-09 22:05:32,138Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2024-04-09 22:05:32,141Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2024-04-09 22:05:32,154Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2024-04-09 22:05:32,166Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2024-04-09 22:05:32,171Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2024-04-09 22:05:32,175Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2024-04-09 22:05:32,179Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2024-04-09 22:05:32,217Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle:  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:32,303Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:05:32,341Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle:  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:32,428Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:05:32,465Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation:  128 v_t values found before 2019-01-15 18:02:00 and after 2019-01-15 19:08:00
INFO 2024-04-09 22:05:32,558Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:05:32,558Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190115T180150/201901151802_201901151908.nc4
INFO 2024-04-09 22:05:32,773Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 8530 vehicle dead reckoned longitude and latitude values
INFO 2024-04-09 22:05:32,948Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 2 longitude_fix and latititude_fix values from /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190115T180150/201901151802_201901151908.nc4
INFO 2024-04-09 22:05:32,948Z lrauvNc4ToNetcdf.py nudge_coords():786 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2024-04-09 22:05:32,949Z lrauvNc4ToNetcdf.py nudge_coords():807                  -            -            -         0      0.00              -              -                             -
INFO 2024-04-09 22:05:32,950Z lrauvNc4ToNetcdf.py nudge_coords():840    0:        0.376   -0.0045590    0.0040509      7107     50.14           9.59          14.97 2019-01-15 18:59:03.881372929
INFO 2024-04-09 22:05:32,954Z lrauvNc4ToNetcdf.py nudge_coords():871    2:            -            -            -      1422      9.77              -              -
INFO 2024-04-09 22:05:32,954Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 8529
INFO 2024-04-09 22:05:32,988Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/tethys_ac/between/20190115T170202/20190115T200850/data.csv
INFO 2024-04-09 22:05:33,092Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database
INFO 2024-04-09 22:05:33,097Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'salinity', 'temperature', 'bin_mean_sea_water_salinity', 'bin_median_sea_water_salinity', 'bin_mean_sea_water_temperature', 'bin_median_sea_water_temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'volumescatcoeff117deg470nm', 'volumescatcoeff117deg650nm', 'particulatebackscatteringcoeff470nm', 'particulatebackscatteringcoeff650nm', 'bin_mean_mass_concentration_of_chlorophyll_in_sea_water', 'bin_median_mass_concentration_of_chlorophyll_in_sea_water', 'ubat_flow_rate', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2024-04-09 22:05:33,509Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S'
INFO 2024-04-09 22:05:33,896Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190115T180150/201901151802_201901151908_2S_scieng.nc