INFO 2024-04-09 22:05:05,879Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190114T224127/201901142241_201901142253.nc4 file...
INFO 2024-04-09 22:05:05,880Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/201901142241_201901142253.nc4
INFO 2024-04-09 22:05:06,337Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190114T224127/201901142241_201901142253.nc4
INFO 2024-04-09 22:05:06,371Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   59 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:06,467Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   59 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:06,563Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   58 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:06,664Z lrauvNc4ToNetcdf.py createSeries():299 time     :   58 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:06,769Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   59 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:06,871Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   59 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:06,975Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   58 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:07,074Z lrauvNc4ToNetcdf.py createSeries():299 time     :   58 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:07,174Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   59 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:07,270Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   59 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:07,377Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   58 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:07,481Z lrauvNc4ToNetcdf.py createSeries():299 time     :   58 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:07,579Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   59 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:07,676Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   59 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:07,771Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   58 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:07,863Z lrauvNc4ToNetcdf.py createSeries():299 time     :   58 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:07,928Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes
INFO 2024-04-09 22:05:07,932Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2024-04-09 22:05:07,933Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   59 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:07,938Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2024-04-09 22:05:07,939Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   59 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:07,944Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2024-04-09 22:05:07,945Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   59 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:07,950Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2024-04-09 22:05:07,955Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2024-04-09 22:05:07,959Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2024-04-09 22:05:07,962Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_salinity renaming to bin_mean_sea_water_salinity
INFO 2024-04-09 22:05:07,966Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to bin_median_sea_water_salinity
INFO 2024-04-09 22:05:07,969Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_temperature renaming to bin_mean_sea_water_temperature
INFO 2024-04-09 22:05:07,973Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to bin_median_sea_water_temperature
INFO 2024-04-09 22:05:07,974Z lrauvNc4ToNetcdf.py createSeries():299 downwelling_photosynthetic_photon_flux_in_sea_water:   58 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:07,979Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2024-04-09 22:05:07,984Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2024-04-09 22:05:07,989Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2024-04-09 22:05:07,994Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2024-04-09 22:05:07,999Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2024-04-09 22:05:08,003Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg470nm renaming to volumescatcoeff117deg470nm
INFO 2024-04-09 22:05:08,008Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg650nm renaming to volumescatcoeff117deg650nm
INFO 2024-04-09 22:05:08,012Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff470nm renaming to particulatebackscatteringcoeff470nm
INFO 2024-04-09 22:05:08,015Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff650nm renaming to particulatebackscatteringcoeff650nm
INFO 2024-04-09 22:05:08,019Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_mean_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 22:05:08,023Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_median_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 22:05:08,024Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable flow_rate empty so skipping
INFO 2024-04-09 22:05:08,027Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2024-04-09 22:05:08,031Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2024-04-09 22:05:08,033Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable platform_mass_position empty so skipping
INFO 2024-04-09 22:05:08,034Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable platform_rudder_angle empty so skipping
INFO 2024-04-09 22:05:08,038Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2024-04-09 22:05:08,046Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable platform_battery_charge empty so skipping
INFO 2024-04-09 22:05:08,051Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable platform_battery_voltage empty so skipping
INFO 2024-04-09 22:05:08,055Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2024-04-09 22:05:08,059Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2024-04-09 22:05:08,063Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2024-04-09 22:05:08,095Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle:   58 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:08,165Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:05:08,200Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle:   58 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:08,281Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:05:08,315Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation:   58 v_t values found before 2019-01-14 22:41:00 and after 2019-01-14 22:53:00
INFO 2024-04-09 22:05:08,385Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:05:08,385Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190114T224127/201901142241_201901142253.nc4
INFO 2024-04-09 22:05:08,535Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 1499 vehicle dead reckoned longitude and latitude values
INFO 2024-04-09 22:05:08,700Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 1 longitude_fix and latititude_fix values from /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190114T224127/201901142241_201901142253.nc4
INFO 2024-04-09 22:05:08,700Z lrauvNc4ToNetcdf.py nudge_coords():786 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2024-04-09 22:05:08,701Z lrauvNc4ToNetcdf.py nudge_coords():807                  -            -            -       467      3.46              -              -                             -
INFO 2024-04-09 22:05:08,702Z lrauvNc4ToNetcdf.py nudge_coords():871    1:            -            -            -      1031      7.97              -              -
INFO 2024-04-09 22:05:08,702Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 1498
INFO 2024-04-09 22:05:08,738Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/tethys_ac/between/20190114T214128/20190114T235323/data.csv
INFO 2024-04-09 22:05:08,837Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database
INFO 2024-04-09 22:05:08,841Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'salinity', 'temperature', 'bin_mean_sea_water_salinity', 'bin_median_sea_water_salinity', 'bin_mean_sea_water_temperature', 'bin_median_sea_water_temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'volumescatcoeff117deg470nm', 'volumescatcoeff117deg650nm', 'particulatebackscatteringcoeff470nm', 'particulatebackscatteringcoeff650nm', 'bin_mean_mass_concentration_of_chlorophyll_in_sea_water', 'bin_median_mass_concentration_of_chlorophyll_in_sea_water', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_propeller_rotation_rate', 'fix_time', 'fix_latitude', 'fix_longitude', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2024-04-09 22:05:09,483Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S'
INFO 2024-04-09 22:05:10,475Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/tethys/missionlogs/2019/20190114_20190117/20190114T224127/201901142241_201901142253_2S_scieng.nc