INFO 2020-08-01 03:56:42,776Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Reading /mbari/LRAUV/tethys/missionlogs/2018/20180906_20180917/20180907T170913/201809071709_201809071902.nc4.orig file...
INFO 2020-08-01 03:56:42,777Z lrauvNc4ToNetcdf.py processResampleNc4File():1006 After copying to /tmp/201809071709_201809071902.nc4.orig
INFO 2020-08-01 03:56:43,887Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Read file /mbari/LRAUV/tethys/missionlogs/2018/20180906_20180917/20180907T170913/201809071709_201809071902.nc4.orig
INFO 2020-08-01 03:56:43,937Z lrauvNc4ToNetcdf.py createSeries():240 latitude :   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:44,244Z lrauvNc4ToNetcdf.py createSeries():240 longitude:   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:44,552Z lrauvNc4ToNetcdf.py createSeries():240 depth    :   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:44,873Z lrauvNc4ToNetcdf.py createSeries():240 time     :   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:45,200Z lrauvNc4ToNetcdf.py createSeries():240 latitude :   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:45,542Z lrauvNc4ToNetcdf.py createSeries():240 longitude:   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:45,879Z lrauvNc4ToNetcdf.py createSeries():240 depth    :   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:46,228Z lrauvNc4ToNetcdf.py createSeries():240 time     :   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:46,570Z lrauvNc4ToNetcdf.py createSeries():240 latitude :   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:46,911Z lrauvNc4ToNetcdf.py createSeries():240 longitude:   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:47,249Z lrauvNc4ToNetcdf.py createSeries():240 depth    :   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:47,593Z lrauvNc4ToNetcdf.py createSeries():240 time     :   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:47,942Z lrauvNc4ToNetcdf.py createSeries():240 latitude :   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:48,276Z lrauvNc4ToNetcdf.py createSeries():240 longitude:   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:48,607Z lrauvNc4ToNetcdf.py createSeries():240 depth    :   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:48,953Z lrauvNc4ToNetcdf.py createSeries():240 time     :   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:49,255Z lrauvNc4ToNetcdf.py processResampleNc4File():1021 Creating t variable of the time indexes
INFO 2020-08-01 03:56:49,270Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2020-08-01 03:56:49,274Z lrauvNc4ToNetcdf.py createSeries():240 longitude:   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:49,500Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2020-08-01 03:56:49,504Z lrauvNc4ToNetcdf.py createSeries():240 latitude :   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:49,724Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2020-08-01 03:56:49,728Z lrauvNc4ToNetcdf.py createSeries():240 depth    :   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:49,947Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
INFO 2020-08-01 03:56:49,951Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2020-08-01 03:56:49,954Z lrauvNc4ToNetcdf.py createSeries():240 longitude:   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:50,172Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2020-08-01 03:56:50,176Z lrauvNc4ToNetcdf.py createSeries():240 latitude :   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:50,395Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2020-08-01 03:56:50,399Z lrauvNc4ToNetcdf.py createSeries():240 depth    :   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:50,621Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2020-08-01 03:56:50,625Z lrauvNc4ToNetcdf.py createSeries():240 sea_water_salinity:   20 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:50,711Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2020-08-01 03:56:50,714Z lrauvNc4ToNetcdf.py createSeries():240 sea_water_temperature:   20 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:50,801Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2020-08-01 03:56:50,804Z lrauvNc4ToNetcdf.py createSeries():240 bin_median_sea_water_salinity:    3 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:50,828Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to salinity
INFO 2020-08-01 03:56:50,831Z lrauvNc4ToNetcdf.py createSeries():240 bin_median_sea_water_temperature:    3 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:50,855Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to temperature
INFO 2020-08-01 03:56:50,859Z lrauvNc4ToNetcdf.py createSeries():240 downwelling_photosynthetic_photon_flux_in_sea_water:   36 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:51,087Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-08-01 03:56:51,090Z lrauvNc4ToNetcdf.py createSeries():240 mass_concentration_of_chlorophyll_in_sea_water:   39 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:51,255Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-08-01 03:56:51,259Z lrauvNc4ToNetcdf.py createSeries():240 Output470:   39 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:51,423Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-08-01 03:56:51,427Z lrauvNc4ToNetcdf.py createSeries():240 Output650:   39 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:51,591Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-08-01 03:56:51,594Z lrauvNc4ToNetcdf.py createSeries():240 bin_mean_mass_concentration_of_chlorophyll_in_sea_water:    4 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:51,618Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-08-01 03:56:51,621Z lrauvNc4ToNetcdf.py createSeries():240 bin_median_mass_concentration_of_chlorophyll_in_sea_water:    4 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:51,646Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-08-01 03:56:51,649Z lrauvNc4ToNetcdf.py createSeries():240 platform_buoyancy_position:    1 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:51,696Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-08-01 03:56:51,711Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-08-01 03:56:51,714Z lrauvNc4ToNetcdf.py createSeries():240 platform_mass_position:   16 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:51,730Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-08-01 03:56:51,739Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-08-01 03:56:51,775Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-08-01 03:56:51,794Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2020-08-01 03:56:51,813Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2020-08-01 03:56:51,821Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-08-01 03:56:51,829Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-08-01 03:56:51,837Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-08-01 03:56:51,885Z lrauvNc4ToNetcdf.py createSeries():240 platform_pitch_angle:   34 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:52,190Z lrauvNc4ToNetcdf.py createNav():505 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-08-01 03:56:52,227Z lrauvNc4ToNetcdf.py createSeries():240 platform_roll_angle:   34 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:52,505Z lrauvNc4ToNetcdf.py createNav():505 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-08-01 03:56:52,542Z lrauvNc4ToNetcdf.py createSeries():240 platform_orientation:   34 v_t values found before 2018-09-07 17:09:00 and after 2018-09-07 19:02:00
INFO 2020-08-01 03:56:52,819Z lrauvNc4ToNetcdf.py createNav():505 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-08-01 03:56:52,821Z lrauvNc4ToNetcdf.py nudge_coords():625 /mbari/LRAUV/tethys/missionlogs/2018/20180906_20180917/20180907T170913/201809071709_201809071902.nc4.orig
INFO 2020-08-01 03:56:53,558Z lrauvNc4ToNetcdf.py nudge_coords():643 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-08-01 03:56:53,560Z lrauvNc4ToNetcdf.py nudge_coords():660                  -            -            -         0      0.00              -              -                             -
INFO 2020-08-01 03:56:53,565Z lrauvNc4ToNetcdf.py nudge_coords():686    0:        0.344    0.0071231    0.0008413     14866    104.11           1.13           1.50 2018-09-07 19:00:01.867688894
INFO 2020-08-01 03:56:53,572Z lrauvNc4ToNetcdf.py nudge_coords():716    2:            -            -            -       317      2.31              -              -
INFO 2020-08-01 03:56:53,573Z lrauvNc4ToNetcdf.py nudge_coords():720 Points in final series = 15183
INFO 2020-08-01 03:56:53,607Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():549 http://odss.mbari.org/trackingdb/position/tethys_ac/between/20180907T160924/20180907T200220/data.csv
INFO 2020-08-01 03:56:53,682Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():572 Found 1 position values from the Tracking database
INFO 2020-08-01 03:56:53,686Z lrauvNc4ToNetcdf.py processResampleNc4File():1152 ['pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'salinity', 'temperature', 'PAR', 'chlorophyll', 'bbp470', 'bbp650', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-08-01 03:56:54,519Z lrauvNc4ToNetcdf.py processResampleNc4File():1155 Wrote /mbari/LRAUV/tethys/missionlogs/2018/20180906_20180917/20180907T170913/201809071709_201809071902_2S_scieng.nc.orig