INFO 2020-11-10 02:43:21,351Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/tethys/missionlogs/2018/20180829_20180830/20180829T225930/201808292259_201808300407.nc4 file...
INFO 2020-11-10 02:43:21,352Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201808292259_201808300407.nc4
INFO 2020-11-10 02:43:22,072Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/tethys/missionlogs/2018/20180829_20180830/20180829T225930/201808292259_201808300407.nc4
INFO 2020-11-10 02:43:22,096Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:22,570Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:23,038Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   16 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:23,502Z lrauvNc4ToNetcdf.py createSeries():241 time     :   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:23,982Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:24,447Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:24,915Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   16 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:25,381Z lrauvNc4ToNetcdf.py createSeries():241 time     :   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:25,848Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:26,311Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:26,779Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   16 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:27,244Z lrauvNc4ToNetcdf.py createSeries():241 time     :   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:27,707Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:28,174Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:28,637Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   16 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:29,109Z lrauvNc4ToNetcdf.py createSeries():241 time     :   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:29,561Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes
INFO 2020-11-10 02:43:29,590Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2020-11-10 02:43:29,594Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:30,043Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2020-11-10 02:43:30,047Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:30,502Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2020-11-10 02:43:30,506Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:30,957Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
INFO 2020-11-10 02:43:30,962Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator
INFO 2020-11-10 02:43:30,965Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:31,414Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-10 02:43:31,418Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:31,871Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-10 02:43:31,875Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:32,322Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2020-11-10 02:43:32,324Z lrauvNc4ToNetcdf.py createSeries():241 sea_water_salinity:   32 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:32,434Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2020-11-10 02:43:32,436Z lrauvNc4ToNetcdf.py createSeries():241 sea_water_temperature:   32 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:32,543Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2020-11-10 02:43:32,545Z lrauvNc4ToNetcdf.py createSeries():241 bin_median_sea_water_salinity:    6 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:32,571Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to salinity
INFO 2020-11-10 02:43:32,572Z lrauvNc4ToNetcdf.py createSeries():241 bin_median_sea_water_temperature:    6 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:32,598Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to temperature
INFO 2020-11-10 02:43:32,601Z lrauvNc4ToNetcdf.py createSeries():241 downwelling_photosynthetic_photon_flux_in_sea_water:   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:33,033Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-11-10 02:43:33,035Z lrauvNc4ToNetcdf.py createSeries():241 mass_concentration_of_chlorophyll_in_sea_water:   64 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:33,241Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-10 02:43:33,244Z lrauvNc4ToNetcdf.py createSeries():241 Output470:   64 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:33,453Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-11-10 02:43:33,456Z lrauvNc4ToNetcdf.py createSeries():241 Output650:   64 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:33,659Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-11-10 02:43:33,661Z lrauvNc4ToNetcdf.py createSeries():241 bin_mean_mass_concentration_of_chlorophyll_in_sea_water:    6 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:33,687Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-10 02:43:33,689Z lrauvNc4ToNetcdf.py createSeries():241 bin_median_mass_concentration_of_chlorophyll_in_sea_water:    6 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:33,715Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-10 02:43:33,750Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-11-10 02:43:33,809Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-11-10 02:43:33,829Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-11-10 02:43:33,830Z lrauvNc4ToNetcdf.py createSeries():241 platform_rudder_angle:   10 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:33,883Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-11-10 02:43:34,065Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-11-10 02:43:34,071Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-11-10 02:43:34,077Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-11-10 02:43:34,082Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-11-10 02:43:34,106Z lrauvNc4ToNetcdf.py createSeries():241 platform_pitch_angle:   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:34,583Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-10 02:43:34,602Z lrauvNc4ToNetcdf.py createSeries():241 platform_roll_angle:   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:35,077Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-10 02:43:35,097Z lrauvNc4ToNetcdf.py createSeries():241 platform_orientation:   15 v_t values found before 2018-08-29 22:59:00 and after 2018-08-30 04:07:00
INFO 2020-11-10 02:43:35,572Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-10 02:43:35,573Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/tethys/missionlogs/2018/20180829_20180830/20180829T225930/201808292259_201808300407.nc4
INFO 2020-11-10 02:43:36,555Z lrauvNc4ToNetcdf.py outlier_mask():590 Found longitude_fix outliers [-2.18559042] at times [Timestamp('2018-08-30 01:17:44.383908033')], indexes: [11]
INFO 2020-11-10 02:43:36,555Z lrauvNc4ToNetcdf.py outlier_mask():591 Median of 21 signal points: -2.1260937897022814
INFO 2020-11-10 02:43:36,595Z lrauvNc4ToNetcdf.py outlier_mask():590 Found latitude_fix outliers [0.70692386] at times [Timestamp('2018-08-30 01:17:44.383908033')], indexes: [11]
INFO 2020-11-10 02:43:36,595Z lrauvNc4ToNetcdf.py outlier_mask():591 Median of 21 signal points: 0.6424120236988529
INFO 2020-11-10 02:43:36,597Z lrauvNc4ToNetcdf.py nudge_coords():674 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-11-10 02:43:36,598Z lrauvNc4ToNetcdf.py nudge_coords():691                  -            -            -         0      0.00              -              -                             -
INFO 2020-11-10 02:43:36,599Z lrauvNc4ToNetcdf.py nudge_coords():724    0:        0.325   -0.0001343   -0.0004047       970      7.44          -6.28         -10.08 2018-08-29 23:09:08.018279076
INFO 2020-11-10 02:43:36,604Z lrauvNc4ToNetcdf.py nudge_coords():724    1:        0.378   -0.0001732   -0.0000150      1055      7.10          -0.24          -0.39 2018-08-29 23:16:14.229655027
INFO 2020-11-10 02:43:36,608Z lrauvNc4ToNetcdf.py nudge_coords():724    2:        0.390    0.0013502    0.0003647      1356      9.88           4.27           6.84 2018-08-29 23:26:07.193525076
INFO 2020-11-10 02:43:36,613Z lrauvNc4ToNetcdf.py nudge_coords():724    3:        0.338    0.0010033    0.0002347       691      5.21           5.21           8.35 2018-08-29 23:31:20.058857918
INFO 2020-11-10 02:43:36,617Z lrauvNc4ToNetcdf.py nudge_coords():724    4:        0.310    0.0015837    0.0008117      1439     10.38           9.05          14.49 2018-08-29 23:41:43.254347086
INFO 2020-11-10 02:43:36,622Z lrauvNc4ToNetcdf.py nudge_coords():724    5:        0.364    0.0063498    0.0026667      7192     51.79           5.98           9.54 2018-08-30 00:33:31.148140907
INFO 2020-11-10 02:43:36,627Z lrauvNc4ToNetcdf.py nudge_coords():724    6:        0.339    0.0013763    0.0006370      1049      7.52           9.84          15.69 2018-08-30 00:41:02.982011080
INFO 2020-11-10 02:43:36,631Z lrauvNc4ToNetcdf.py nudge_coords():724    7:        0.239    0.0006180    0.0002085       398      3.20           7.57          12.07 2018-08-30 00:44:15.419348001
INFO 2020-11-10 02:43:36,636Z lrauvNc4ToNetcdf.py nudge_coords():724    8:        0.371    0.0012093    0.0031284      2809     20.49          17.77          28.29 2018-08-30 01:04:44.994362116
INFO 2020-11-10 02:43:36,640Z lrauvNc4ToNetcdf.py nudge_coords():724    9:        0.266    0.0013472    0.0001770      1109      8.33           2.47           3.94 2018-08-30 01:13:05.326492071
INFO 2020-11-10 02:43:36,645Z lrauvNc4ToNetcdf.py nudge_coords():724   10:        0.347          nan          nan       576      4.64            nan            nan 2018-08-30 01:17:44.036758900
INFO 2020-11-10 02:43:36,650Z lrauvNc4ToNetcdf.py nudge_coords():724   12:        0.362    0.0009163   -0.0002780       854      6.42          -5.04          -8.02 2018-08-30 01:40:01.839278936
INFO 2020-11-10 02:43:36,655Z lrauvNc4ToNetcdf.py nudge_coords():724   13:        0.344   -0.0025521    0.0106024     10367     71.58          17.40          27.45 2018-08-30 02:51:37.016788006
INFO 2020-11-10 02:43:36,660Z lrauvNc4ToNetcdf.py nudge_coords():724   14:        0.333   -0.0009640    0.0007221      1078      9.65           8.80          13.87 2018-08-30 03:01:16.116301060
INFO 2020-11-10 02:43:36,664Z lrauvNc4ToNetcdf.py nudge_coords():724   15:        0.322   -0.0019152    0.0015059      1768     17.96           9.87          15.54 2018-08-30 03:19:13.959418058
INFO 2020-11-10 02:43:36,669Z lrauvNc4ToNetcdf.py nudge_coords():724   16:        0.505   -0.0032427    0.0026338      2213     25.89          12.00          18.85 2018-08-30 03:45:07.481406927
INFO 2020-11-10 02:43:36,674Z lrauvNc4ToNetcdf.py nudge_coords():724   17:        0.375   -0.0006084    0.0002034       331      3.50           6.86          10.77 2018-08-30 03:48:38.056431055
INFO 2020-11-10 02:43:36,678Z lrauvNc4ToNetcdf.py nudge_coords():724   18:        0.342   -0.0008741    0.0006692       726      7.59          10.40          16.33 2018-08-30 03:56:14.211632967
INFO 2020-11-10 02:43:36,683Z lrauvNc4ToNetcdf.py nudge_coords():724   19:        0.703   -0.0009735    0.0006228       738      9.30           7.91          12.40 2018-08-30 04:05:32.809494972
INFO 2020-11-10 02:43:36,687Z lrauvNc4ToNetcdf.py nudge_coords():754   20:            -            -            -        29      1.96              -              -
INFO 2020-11-10 02:43:36,687Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 36748
INFO 2020-11-10 02:43:36,704Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/tethys_ac/between/20180829T215931/20180830T050731/data.csv
INFO 2020-11-10 02:43:36,777Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database
INFO 2020-11-10 02:43:36,781Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'salinity', 'temperature', 'PAR', 'chlorophyll', 'bbp470', 'bbp650', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'fix_time', 'fix_latitude', 'fix_longitude', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-11-10 02:43:37,204Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/tethys/missionlogs/2018/20180829_20180830/20180829T225930/201808292259_201808300407_2S_scieng.nc