INFO 2020-07-30 02:47:59,862Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Reading /mbari/LRAUV/tethys/missionlogs/2013/20130909_20130909/20130909T171827/201309091718_201309091729.nc4 file...
INFO 2020-07-30 02:47:59,862Z lrauvNc4ToNetcdf.py processResampleNc4File():1006 After copying to /tmp/201309091718_201309091729.nc4
INFO 2020-07-30 02:48:00,326Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Read file /mbari/LRAUV/tethys/missionlogs/2013/20130909_20130909/20130909T171827/201309091718_201309091729.nc4
INFO 2020-07-30 02:48:00,363Z lrauvNc4ToNetcdf.py createSeries():240 depth    :  138 v_t values found before 2013-09-09 17:18:00 and after 2013-09-09 17:29:00
INFO 2020-07-30 02:48:00,416Z lrauvNc4ToNetcdf.py createSeries():240 time     :  138 v_t values found before 2013-09-09 17:18:00 and after 2013-09-09 17:29:00
INFO 2020-07-30 02:48:00,492Z lrauvNc4ToNetcdf.py createSeries():240 depth    :  138 v_t values found before 2013-09-09 17:18:00 and after 2013-09-09 17:29:00
INFO 2020-07-30 02:48:00,544Z lrauvNc4ToNetcdf.py createSeries():240 time     :  138 v_t values found before 2013-09-09 17:18:00 and after 2013-09-09 17:29:00
INFO 2020-07-30 02:48:00,619Z lrauvNc4ToNetcdf.py createSeries():240 depth    :  138 v_t values found before 2013-09-09 17:18:00 and after 2013-09-09 17:29:00
INFO 2020-07-30 02:48:00,671Z lrauvNc4ToNetcdf.py createSeries():240 time     :  138 v_t values found before 2013-09-09 17:18:00 and after 2013-09-09 17:29:00
INFO 2020-07-30 02:48:00,746Z lrauvNc4ToNetcdf.py createSeries():240 depth    :  138 v_t values found before 2013-09-09 17:18:00 and after 2013-09-09 17:29:00
INFO 2020-07-30 02:48:00,798Z lrauvNc4ToNetcdf.py createSeries():240 time     :  138 v_t values found before 2013-09-09 17:18:00 and after 2013-09-09 17:29:00
INFO 2020-07-30 02:48:00,843Z lrauvNc4ToNetcdf.py processResampleNc4File():1021 Creating t variable of the time indexes
INFO 2020-07-30 02:48:00,848Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Variable time_fix empty so skipping
INFO 2020-07-30 02:48:00,851Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Variable latitude_fix empty so skipping
INFO 2020-07-30 02:48:00,854Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Variable longitude_fix empty so skipping
INFO 2020-07-30 02:48:00,856Z lrauvNc4ToNetcdf.py createSeries():240 downwelling_photosynthetic_photon_flux_in_sea_water:  138 v_t values found before 2013-09-09 17:18:00 and after 2013-09-09 17:29:00
INFO 2020-07-30 02:48:00,881Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-07-30 02:48:00,887Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-07-30 02:48:00,889Z lrauvNc4ToNetcdf.py createSeries():240 platform_rudder_angle:  138 v_t values found before 2013-09-09 17:18:00 and after 2013-09-09 17:29:00
INFO 2020-07-30 02:48:00,913Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-07-30 02:48:00,923Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-07-30 02:48:00,930Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-07-30 02:48:00,936Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-07-30 02:48:00,939Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Variable sea_water_salinity empty so skipping
INFO 2020-07-30 02:48:00,941Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Variable sea_water_temperature empty so skipping
INFO 2020-07-30 02:48:00,947Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-07-30 02:48:00,952Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-07-30 02:48:00,958Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-07-30 02:48:00,963Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2020-07-30 02:48:00,969Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group ISUS parameter mole_concentration_of_nitrate_in_sea_water renaming to nitrate
INFO 2020-07-30 02:48:00,970Z lrauvNc4ToNetcdf.py createSeries():240 platform_average_current:    1 v_t values found before 2013-09-09 17:18:00 and after 2013-09-09 17:29:00
INFO 2020-07-30 02:48:00,975Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group Onboard parameter platform_average_current renaming to health_platform_average_current
INFO 2020-07-30 02:48:00,988Z lrauvNc4ToNetcdf.py createSeries():240 platform_pitch_angle:  138 v_t values found before 2013-09-09 17:18:00 and after 2013-09-09 17:29:00
INFO 2020-07-30 02:48:01,033Z lrauvNc4ToNetcdf.py createNav():505 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-07-30 02:48:01,045Z lrauvNc4ToNetcdf.py createSeries():240 platform_roll_angle:  138 v_t values found before 2013-09-09 17:18:00 and after 2013-09-09 17:29:00
INFO 2020-07-30 02:48:01,090Z lrauvNc4ToNetcdf.py createNav():505 platform_roll_angle -> roll: {'units': 'n/a', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-07-30 02:48:01,102Z lrauvNc4ToNetcdf.py createSeries():240 platform_orientation:  138 v_t values found before 2013-09-09 17:18:00 and after 2013-09-09 17:29:00
INFO 2020-07-30 02:48:01,147Z lrauvNc4ToNetcdf.py createNav():505 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-07-30 02:48:01,147Z lrauvNc4ToNetcdf.py nudge_coords():625 /mbari/LRAUV/tethys/missionlogs/2013/20130909_20130909/20130909T171827/201309091718_201309091729.nc4
INFO 2020-07-30 02:48:01,208Z lrauvNc4ToNetcdf.py nudge_coords():643 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
ERROR 2020-07-30 02:48:01,208Z lrauvNc4ToNetcdf.py processResampleNc4File():1148 index 0 is out of bounds for axis 0 with size 0
ERROR 2020-07-30 02:48:01,208Z lrauvNc4ToNetcdf.py processResampleNc4File():1149 Not creating /mbari/LRAUV/tethys/missionlogs/2013/20130909_20130909/20130909T171827/201309091718_201309091729_2S_scieng.nc
INFO 2020-07-30 02:48:01,288Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Reading /mbari/LRAUV/tethys/missionlogs/2013/20131211_20131211/20131212T203406/201312122034_201312122036.nc4 file...
INFO 2020-07-30 02:48:01,289Z lrauvNc4ToNetcdf.py processResampleNc4File():1006 After copying to /tmp/201312122034_201312122036.nc4
INFO 2020-07-30 02:48:01,849Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Read file /mbari/LRAUV/tethys/missionlogs/2013/20131211_20131211/20131212T203406/201312122034_201312122036.nc4
INFO 2020-07-30 02:48:01,887Z lrauvNc4ToNetcdf.py createSeries():240 depth    :    2 v_t values found before 2013-12-12 20:34:00 and after 2013-12-12 20:36:00
INFO 2020-07-30 02:48:01,922Z lrauvNc4ToNetcdf.py createSeries():240 time     :    1 v_t values found before 2013-12-12 20:34:00 and after 2013-12-12 20:36:00
INFO 2020-07-30 02:48:01,982Z lrauvNc4ToNetcdf.py createSeries():240 depth    :    2 v_t values found before 2013-12-12 20:34:00 and after 2013-12-12 20:36:00
INFO 2020-07-30 02:48:02,018Z lrauvNc4ToNetcdf.py createSeries():240 time     :    1 v_t values found before 2013-12-12 20:34:00 and after 2013-12-12 20:36:00
INFO 2020-07-30 02:48:02,077Z lrauvNc4ToNetcdf.py createSeries():240 depth    :    2 v_t values found before 2013-12-12 20:34:00 and after 2013-12-12 20:36:00
INFO 2020-07-30 02:48:02,113Z lrauvNc4ToNetcdf.py createSeries():240 time     :    1 v_t values found before 2013-12-12 20:34:00 and after 2013-12-12 20:36:00
INFO 2020-07-30 02:48:02,172Z lrauvNc4ToNetcdf.py createSeries():240 depth    :    2 v_t values found before 2013-12-12 20:34:00 and after 2013-12-12 20:36:00
INFO 2020-07-30 02:48:02,208Z lrauvNc4ToNetcdf.py createSeries():240 time     :    1 v_t values found before 2013-12-12 20:34:00 and after 2013-12-12 20:36:00
INFO 2020-07-30 02:48:02,234Z lrauvNc4ToNetcdf.py processResampleNc4File():1021 Creating t variable of the time indexes
INFO 2020-07-30 02:48:02,237Z lrauvNc4ToNetcdf.py createSeries():240 downwelling_photosynthetic_photon_flux_in_sea_water:    2 v_t values found before 2013-12-12 20:34:00 and after 2013-12-12 20:36:00
INFO 2020-07-30 02:48:02,245Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-07-30 02:48:02,248Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Variable time_fix empty so skipping
INFO 2020-07-30 02:48:02,250Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Variable latitude_fix empty so skipping
INFO 2020-07-30 02:48:02,253Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Variable longitude_fix empty so skipping
INFO 2020-07-30 02:48:02,259Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-07-30 02:48:02,261Z lrauvNc4ToNetcdf.py createSeries():240 platform_rudder_angle:    2 v_t values found before 2013-12-12 20:34:00 and after 2013-12-12 20:36:00
INFO 2020-07-30 02:48:02,268Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-07-30 02:48:02,273Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-07-30 02:48:02,280Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-07-30 02:48:02,286Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-07-30 02:48:02,288Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Variable sea_water_salinity empty so skipping
INFO 2020-07-30 02:48:02,291Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Variable sea_water_temperature empty so skipping
INFO 2020-07-30 02:48:02,296Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-07-30 02:48:02,302Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-07-30 02:48:02,307Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-07-30 02:48:02,313Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2020-07-30 02:48:02,318Z lrauvNc4ToNetcdf.py processResampleNc4File():1096 Found in group ISUS parameter mole_concentration_of_nitrate_in_sea_water renaming to nitrate
INFO 2020-07-30 02:48:02,321Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Variable platform_average_current empty so skipping
INFO 2020-07-30 02:48:02,333Z lrauvNc4ToNetcdf.py createSeries():240 platform_pitch_angle:    2 v_t values found before 2013-12-12 20:34:00 and after 2013-12-12 20:36:00
INFO 2020-07-30 02:48:02,362Z lrauvNc4ToNetcdf.py createNav():505 platform_pitch_angle -> pitch: {'units': 'arcdeg', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-07-30 02:48:02,373Z lrauvNc4ToNetcdf.py createSeries():240 platform_roll_angle:    2 v_t values found before 2013-12-12 20:34:00 and after 2013-12-12 20:36:00
INFO 2020-07-30 02:48:02,402Z lrauvNc4ToNetcdf.py createNav():505 platform_roll_angle -> roll: {'units': 'arcdeg', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-07-30 02:48:02,413Z lrauvNc4ToNetcdf.py createSeries():240 platform_orientation:    2 v_t values found before 2013-12-12 20:34:00 and after 2013-12-12 20:36:00
INFO 2020-07-30 02:48:02,442Z lrauvNc4ToNetcdf.py createNav():505 platform_orientation -> yaw: {'units': 'arcdeg', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-07-30 02:48:02,442Z lrauvNc4ToNetcdf.py nudge_coords():625 /mbari/LRAUV/tethys/missionlogs/2013/20131211_20131211/20131212T203406/201312122034_201312122036.nc4
INFO 2020-07-30 02:48:02,503Z lrauvNc4ToNetcdf.py nudge_coords():643 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
ERROR 2020-07-30 02:48:02,503Z lrauvNc4ToNetcdf.py processResampleNc4File():1148 index 0 is out of bounds for axis 0 with size 0
ERROR 2020-07-30 02:48:02,504Z lrauvNc4ToNetcdf.py processResampleNc4File():1149 Not creating /mbari/LRAUV/tethys/missionlogs/2013/20131211_20131211/20131212T203406/201312122034_201312122036_2S_scieng.nc