INFO 2020-05-30 16:36:11,712Z lrauvNc4ToNetcdf.py processResampleNc4File():994 Reading /mbari/LRAUV/tethys/missionlogs/2013/20130313_20130320/20130316T102632/201303161026_201303161040.nc4 file... INFO 2020-05-30 16:36:11,713Z lrauvNc4ToNetcdf.py processResampleNc4File():995 After copying to /tmp/201303161026_201303161040.nc4 INFO 2020-05-30 16:36:12,291Z lrauvNc4ToNetcdf.py processResampleNc4File():997 Read file /mbari/LRAUV/tethys/missionlogs/2013/20130313_20130320/20130316T102632/201303161026_201303161040.nc4 INFO 2020-05-30 16:36:12,301Z lrauvNc4ToNetcdf.py createSeries():240 latitude: v_t values found before 2013-03-16 10:26:00 and after 2013-03-16 10:40:00: [1067 1068 1069 1070] INFO 2020-05-30 16:36:12,306Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:01 2013'] INFO 2020-05-30 16:36:12,310Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3634304e+09 1.3634304e+09 1.3634304e+09 1.3634304e+09] for variable latitude INFO 2020-05-30 16:36:12,339Z lrauvNc4ToNetcdf.py createSeries():240 longitude: v_t values found before 2013-03-16 10:26:00 and after 2013-03-16 10:40:00: [1067 1068 1069 1070] INFO 2020-05-30 16:36:12,343Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:01 2013'] INFO 2020-05-30 16:36:12,347Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3634304e+09 1.3634304e+09 1.3634304e+09 1.3634304e+09] for variable longitude INFO 2020-05-30 16:36:12,376Z lrauvNc4ToNetcdf.py createSeries():240 depth: v_t values found before 2013-03-16 10:26:00 and after 2013-03-16 10:40:00: [1237 1238 1239 1240] INFO 2020-05-30 16:36:12,380Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:01 2013'] INFO 2020-05-30 16:36:12,384Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3634304e+09 1.3634304e+09 1.3634304e+09 1.3634304e+09] for variable depth INFO 2020-05-30 16:36:12,415Z lrauvNc4ToNetcdf.py createSeries():240 time: v_t values found before 2013-03-16 10:26:00 and after 2013-03-16 10:40:00: [1236 1237 1238] INFO 2020-05-30 16:36:12,419Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:01 2013'] INFO 2020-05-30 16:36:12,422Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3634304e+09 1.3634304e+09 1.3634304e+09] for variable time INFO 2020-05-30 16:36:12,453Z lrauvNc4ToNetcdf.py createSeries():240 latitude: v_t values found before 2013-03-16 10:26:00 and after 2013-03-16 10:40:00: [1067 1068 1069 1070] INFO 2020-05-30 16:36:12,457Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:01 2013'] INFO 2020-05-30 16:36:12,461Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3634304e+09 1.3634304e+09 1.3634304e+09 1.3634304e+09] for variable latitude INFO 2020-05-30 16:36:12,489Z lrauvNc4ToNetcdf.py createSeries():240 longitude: v_t values found before 2013-03-16 10:26:00 and after 2013-03-16 10:40:00: [1067 1068 1069 1070] INFO 2020-05-30 16:36:12,493Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:01 2013'] INFO 2020-05-30 16:36:12,497Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3634304e+09 1.3634304e+09 1.3634304e+09 1.3634304e+09] for variable longitude INFO 2020-05-30 16:36:12,525Z lrauvNc4ToNetcdf.py createSeries():240 depth: v_t values found before 2013-03-16 10:26:00 and after 2013-03-16 10:40:00: [1237 1238 1239 1240] INFO 2020-05-30 16:36:12,529Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:01 2013'] INFO 2020-05-30 16:36:12,533Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3634304e+09 1.3634304e+09 1.3634304e+09 1.3634304e+09] for variable depth INFO 2020-05-30 16:36:12,563Z lrauvNc4ToNetcdf.py createSeries():240 time: v_t values found before 2013-03-16 10:26:00 and after 2013-03-16 10:40:00: [1236 1237 1238] INFO 2020-05-30 16:36:12,567Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:01 2013'] INFO 2020-05-30 16:36:12,571Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3634304e+09 1.3634304e+09 1.3634304e+09] for variable time INFO 2020-05-30 16:36:12,601Z lrauvNc4ToNetcdf.py createSeries():240 latitude: v_t values found before 2013-03-16 10:26:00 and after 2013-03-16 10:40:00: [1067 1068 1069 1070] INFO 2020-05-30 16:36:12,605Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:01 2013'] INFO 2020-05-30 16:36:12,609Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3634304e+09 1.3634304e+09 1.3634304e+09 1.3634304e+09] for variable latitude INFO 2020-05-30 16:36:12,638Z lrauvNc4ToNetcdf.py createSeries():240 longitude: v_t values found before 2013-03-16 10:26:00 and after 2013-03-16 10:40:00: [1067 1068 1069 1070] INFO 2020-05-30 16:36:12,642Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:01 2013'] INFO 2020-05-30 16:36:12,646Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3634304e+09 1.3634304e+09 1.3634304e+09 1.3634304e+09] for variable longitude INFO 2020-05-30 16:36:12,674Z lrauvNc4ToNetcdf.py createSeries():240 depth: v_t values found before 2013-03-16 10:26:00 and after 2013-03-16 10:40:00: [1237 1238 1239 1240] INFO 2020-05-30 16:36:12,678Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:01 2013'] INFO 2020-05-30 16:36:12,682Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3634304e+09 1.3634304e+09 1.3634304e+09 1.3634304e+09] for variable depth INFO 2020-05-30 16:36:12,712Z lrauvNc4ToNetcdf.py createSeries():240 time: v_t values found before 2013-03-16 10:26:00 and after 2013-03-16 10:40:00: [1236 1237 1238] INFO 2020-05-30 16:36:12,716Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:01 2013'] INFO 2020-05-30 16:36:12,720Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3634304e+09 1.3634304e+09 1.3634304e+09] for variable time INFO 2020-05-30 16:36:12,750Z lrauvNc4ToNetcdf.py createSeries():240 latitude: v_t values found before 2013-03-16 10:26:00 and after 2013-03-16 10:40:00: [1067 1068 1069 1070] INFO 2020-05-30 16:36:12,754Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:01 2013'] INFO 2020-05-30 16:36:12,758Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3634304e+09 1.3634304e+09 1.3634304e+09 1.3634304e+09] for variable latitude INFO 2020-05-30 16:36:12,786Z lrauvNc4ToNetcdf.py createSeries():240 longitude: v_t values found before 2013-03-16 10:26:00 and after 2013-03-16 10:40:00: [1067 1068 1069 1070] INFO 2020-05-30 16:36:12,790Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:01 2013'] INFO 2020-05-30 16:36:12,794Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3634304e+09 1.3634304e+09 1.3634304e+09 1.3634304e+09] for variable longitude INFO 2020-05-30 16:36:12,822Z lrauvNc4ToNetcdf.py createSeries():240 depth: v_t values found before 2013-03-16 10:26:00 and after 2013-03-16 10:40:00: [1237 1238 1239 1240] INFO 2020-05-30 16:36:12,826Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:01 2013'] INFO 2020-05-30 16:36:12,830Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3634304e+09 1.3634304e+09 1.3634304e+09 1.3634304e+09] for variable depth INFO 2020-05-30 16:36:12,860Z lrauvNc4ToNetcdf.py createSeries():240 time: v_t values found before 2013-03-16 10:26:00 and after 2013-03-16 10:40:00: [1236 1237 1238] INFO 2020-05-30 16:36:12,864Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:01 2013'] INFO 2020-05-30 16:36:12,868Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3634304e+09 1.3634304e+09 1.3634304e+09] for variable time WARNING 2020-05-30 16:36:12,892Z lrauvNc4ToNetcdf.py processResampleNc4File():1006 Dropping from latitude repeated/decreasing values at indices: [185] WARNING 2020-05-30 16:36:12,894Z lrauvNc4ToNetcdf.py processResampleNc4File():1006 Dropping from longitude repeated/decreasing values at indices: [185] WARNING 2020-05-30 16:36:12,896Z lrauvNc4ToNetcdf.py processResampleNc4File():1006 Dropping from depth repeated/decreasing values at indices: [170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 356] WARNING 2020-05-30 16:36:12,898Z lrauvNc4ToNetcdf.py processResampleNc4File():1006 Dropping from time repeated/decreasing values at indices: [168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 354] INFO 2020-05-30 16:36:12,899Z lrauvNc4ToNetcdf.py processResampleNc4File():1010 Creating t variable of the time indexes INFO 2020-05-30 16:36:12,904Z lrauvNc4ToNetcdf.py createSeries():240 downwelling_photosynthetic_photon_flux_in_sea_water: v_t values found before 2013-03-16 10:26:00 and after 2013-03-16 10:40:00: [1236 1237 1238] INFO 2020-05-30 16:36:12,905Z lrauvNc4ToNetcdf.py createSeries():241 Their times: ['Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:00 2013', 'Sat Mar 16 10:40:01 2013'] INFO 2020-05-30 16:36:12,906Z lrauvNc4ToNetcdf.py createSeries():242 Removing them: [1.3634304e+09 1.3634304e+09 1.3634304e+09] for variable downwelling_photosynthetic_photon_flux_in_sea_water INFO 2020-05-30 16:36:12,927Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR INFO 2020-05-30 16:36:12,932Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen INFO 2020-05-30 16:36:12,934Z lrauvNc4ToNetcdf.py processResampleNc4File():1048 Variable sea_water_salinity empty so skipping INFO 2020-05-30 16:36:12,936Z lrauvNc4ToNetcdf.py processResampleNc4File():1048 Variable sea_water_temperature empty so skipping INFO 2020-05-30 16:36:12,941Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2020-05-30 16:36:12,946Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470 INFO 2020-05-30 16:36:12,952Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650 INFO 2020-05-30 16:36:12,952Z lrauvNc4ToNetcdf.py nudge_coords():624 /mbari/LRAUV/tethys/missionlogs/2013/20130313_20130320/20130316T102632/201303161026_201303161040.nc4 DEBUG 2020-05-30 16:36:12,987Z lrauvNc4ToNetcdf.py var_series():612 longitude: rad_to_deg = True DEBUG 2020-05-30 16:36:13,020Z lrauvNc4ToNetcdf.py var_series():612 latitude: rad_to_deg = True DEBUG 2020-05-30 16:36:13,041Z lrauvNc4ToNetcdf.py var_series():612 longitude_fix: rad_to_deg = True DEBUG 2020-05-30 16:36:13,062Z lrauvNc4ToNetcdf.py var_series():612 latitude_fix: rad_to_deg = True INFO 2020-05-30 16:36:13,062Z lrauvNc4ToNetcdf.py nudge_coords():642 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2020-05-30 16:36:13,064Z lrauvNc4ToNetcdf.py nudge_coords():658 - - - 34 0.26 - - - INFO 2020-05-30 16:36:13,066Z lrauvNc4ToNetcdf.py nudge_coords():680 0: 0.057 0.0000000 0.0000000 154 1.12 -0.00 0.00 2013-03-16 10:29:04.440959930 INFO 2020-05-30 16:36:13,071Z lrauvNc4ToNetcdf.py nudge_coords():680 1: 0.357 -0.0002885 0.0004620 762 10.06 -4.97 8.51 2013-03-16 10:39:08.342907906 INFO 2020-05-30 16:36:13,075Z lrauvNc4ToNetcdf.py nudge_coords():710 3: - - - 121 0.85 - - INFO 2020-05-30 16:36:13,075Z lrauvNc4ToNetcdf.py nudge_coords():714 Points in final series = 1071 DEBUG 2020-05-30 16:36:13,076Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():540 Constructing trackingdb url to 3600 seconds beyond time range of file INFO 2020-05-30 16:36:13,084Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():548 http://odss.mbari.org/trackingdb/position/tethys_ac/between/20130316T092646/20130316T114016/data.csv INFO 2020-05-30 16:36:13,129Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():571 Found 0 position values from the Tracking database INFO 2020-05-30 16:36:13,131Z lrauvNc4ToNetcdf.py processResampleNc4File():1143 ['PAR', 'oxygen', 'chlorophyll', 'bbp470', 'bbp650', 'latitude', 'longitude', 'depth', 'time'] DEBUG 2020-05-30 16:36:13,132Z lrauvNc4ToNetcdf.py write_netcdf():130 Creating netCDF file /mbari/LRAUV/tethys/missionlogs/2013/20130313_20130320/20130316T102632/201303161026_201303161040_10S_sci.nc DEBUG 2020-05-30 16:36:13,191Z lrauvNc4ToNetcdf.py write_netcdf():155 Adding in record variable time DEBUG 2020-05-30 16:36:13,200Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable PAR DEBUG 2020-05-30 16:36:13,203Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable oxygen DEBUG 2020-05-30 16:36:13,206Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable chlorophyll DEBUG 2020-05-30 16:36:13,209Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable bbp470 DEBUG 2020-05-30 16:36:13,211Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable bbp650 DEBUG 2020-05-30 16:36:13,214Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable latitude DEBUG 2020-05-30 16:36:13,217Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable longitude DEBUG 2020-05-30 16:36:13,219Z lrauvNc4ToNetcdf.py write_netcdf():167 Adding in record variable depth DEBUG 2020-05-30 16:36:13,226Z lrauvNc4ToNetcdf.py write_netcdf():174 Adding in global metadata INFO 2020-05-30 16:36:13,333Z lrauvNc4ToNetcdf.py processResampleNc4File():1146 Wrote /mbari/LRAUV/tethys/missionlogs/2013/20130313_20130320/20130316T102632/201303161026_201303161040_10S_sci.nc