INFO 2024-07-26 16:03:23,317Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/pontus/missionlogs/2024/20240715_20240725/20240717T152225/202407171522_202407171606.nc4 file...
INFO 2024-07-26 16:03:23,317Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/202407171522_202407171606.nc4
INFO 2024-07-26 16:03:23,705Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/pontus/missionlogs/2024/20240715_20240725/20240717T152225/202407171522_202407171606.nc4
INFO 2024-07-26 16:03:23,731Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:23,785Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:23,840Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:23,899Z lrauvNc4ToNetcdf.py createSeries():299 time     :   54 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:23,957Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,014Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,068Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,124Z lrauvNc4ToNetcdf.py createSeries():299 time     :   54 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,180Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,234Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,288Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,344Z lrauvNc4ToNetcdf.py createSeries():299 time     :   54 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,401Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,457Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,512Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,568Z lrauvNc4ToNetcdf.py createSeries():299 time     :   54 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,607Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes
INFO 2024-07-26 16:03:24,613Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2024-07-26 16:03:24,616Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2024-07-26 16:03:24,620Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2024-07-26 16:03:24,621Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable average_bioluminescence empty so skipping
INFO 2024-07-26 16:03:24,622Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable flow_rate empty so skipping
INFO 2024-07-26 16:03:24,630Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2024-07-26 16:03:24,638Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2024-07-26 16:03:24,641Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group Onboard parameter platform_average_current renaming to health_platform_average_current
INFO 2024-07-26 16:03:24,646Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2024-07-26 16:03:24,650Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2024-07-26 16:03:24,658Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2024-07-26 16:03:24,661Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2024-07-26 16:03:24,665Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2024-07-26 16:03:24,667Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable sea_water_salinity empty so skipping
INFO 2024-07-26 16:03:24,668Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable sea_water_temperature empty so skipping
INFO 2024-07-26 16:03:24,669Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable mass_concentration_of_oxygen_in_sea_water empty so skipping
INFO 2024-07-26 16:03:24,671Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_mean_sea_water_salinity empty so skipping
INFO 2024-07-26 16:03:24,672Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_median_sea_water_salinity empty so skipping
INFO 2024-07-26 16:03:24,674Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_mean_sea_water_temperature empty so skipping
INFO 2024-07-26 16:03:24,675Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_median_sea_water_temperature empty so skipping
INFO 2024-07-26 16:03:24,676Z lrauvNc4ToNetcdf.py createSeries():299 downwelling_photosynthetic_photon_flux_in_sea_water:   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,685Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2024-07-26 16:03:24,687Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2024-07-26 16:03:24,688Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable OutputChl empty so skipping
INFO 2024-07-26 16:03:24,689Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable Output470 empty so skipping
INFO 2024-07-26 16:03:24,691Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable Output650 empty so skipping
INFO 2024-07-26 16:03:24,692Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable VolumeScatCoeff117deg470nm empty so skipping
INFO 2024-07-26 16:03:24,693Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable VolumeScatCoeff117deg650nm empty so skipping
INFO 2024-07-26 16:03:24,695Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable ParticulateBackscatteringCoeff470nm empty so skipping
INFO 2024-07-26 16:03:24,696Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable ParticulateBackscatteringCoeff650nm empty so skipping
INFO 2024-07-26 16:03:24,697Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_mean_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2024-07-26 16:03:24,699Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable bin_median_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2024-07-26 16:03:24,700Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2024-07-26 16:03:24,701Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,705Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2024-07-26 16:03:24,706Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,710Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2024-07-26 16:03:24,711Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,715Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
INFO 2024-07-26 16:03:24,741Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle:   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,783Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-07-26 16:03:24,802Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle:   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,844Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-07-26 16:03:24,863Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation:   53 v_t values found before 2024-07-17 15:22:00 and after 2024-07-17 16:06:00
INFO 2024-07-26 16:03:24,906Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-07-26 16:03:24,906Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/pontus/missionlogs/2024/20240715_20240725/20240717T152225/202407171522_202407171606.nc4
INFO 2024-07-26 16:03:24,998Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 1130 vehicle dead reckoned longitude and latitude values
INFO 2024-07-26 16:03:25,088Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 2 longitude_fix and latititude_fix values from /mbari/LRAUV/pontus/missionlogs/2024/20240715_20240725/20240717T152225/202407171522_202407171606.nc4
INFO 2024-07-26 16:03:25,088Z lrauvNc4ToNetcdf.py nudge_coords():786 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2024-07-26 16:03:25,089Z lrauvNc4ToNetcdf.py nudge_coords():807                  -            -            -         0      0.00              -              -                             -
INFO 2024-07-26 16:03:25,090Z lrauvNc4ToNetcdf.py nudge_coords():840    0:        0.304    0.0000782    0.0000074      1000      6.85           0.14           0.20 2024-07-17 16:05:28.676882029
INFO 2024-07-26 16:03:25,092Z lrauvNc4ToNetcdf.py nudge_coords():871    2:            -            -            -       129      0.86              -              -
INFO 2024-07-26 16:03:25,092Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 1129
INFO 2024-07-26 16:03:25,111Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/pontus_ac/between/20240717T142239/20240717T170621/data.csv
INFO 2024-07-26 16:03:25,191Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database
INFO 2024-07-26 16:03:25,194Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['fix_time', 'fix_latitude', 'fix_longitude', 'health_platform_battery_charge', 'health_platform_average_voltage', 'health_platform_average_current', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'PAR', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2024-07-26 16:03:25,470Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S'
INFO 2024-07-26 16:03:25,766Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/pontus/missionlogs/2024/20240715_20240725/20240717T152225/202407171522_202407171606_2S_scieng.nc