INFO 2024-04-09 23:10:16,953Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/pontus/missionlogs/2020/20201208_20201211/20201210T172643/202012101726_202012101837.nc4 file... INFO 2024-04-09 23:10:16,954Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/202012101726_202012101837.nc4 INFO 2024-04-09 23:10:17,398Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/pontus/missionlogs/2020/20201208_20201211/20201210T172643/202012101726_202012101837.nc4 INFO 2024-04-09 23:10:17,432Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:17,505Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:17,574Z lrauvNc4ToNetcdf.py createSeries():299 depth : 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:17,644Z lrauvNc4ToNetcdf.py createSeries():299 time : 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:17,721Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:17,787Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:17,852Z lrauvNc4ToNetcdf.py createSeries():299 depth : 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:17,917Z lrauvNc4ToNetcdf.py createSeries():299 time : 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:17,983Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:18,049Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:18,114Z lrauvNc4ToNetcdf.py createSeries():299 depth : 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:18,181Z lrauvNc4ToNetcdf.py createSeries():299 time : 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:18,259Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:18,333Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:18,400Z lrauvNc4ToNetcdf.py createSeries():299 depth : 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:18,466Z lrauvNc4ToNetcdf.py createSeries():299 time : 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 WARNING 2024-04-09 23:10:18,512Z lrauvNc4ToNetcdf.py processResampleNc4File():1219 Dropping from latitude repeated/decreasing values at indices: [7731] WARNING 2024-04-09 23:10:18,515Z lrauvNc4ToNetcdf.py processResampleNc4File():1219 Dropping from longitude repeated/decreasing values at indices: [7731] WARNING 2024-04-09 23:10:18,517Z lrauvNc4ToNetcdf.py processResampleNc4File():1219 Dropping from depth repeated/decreasing values at indices: [7731] WARNING 2024-04-09 23:10:18,519Z lrauvNc4ToNetcdf.py processResampleNc4File():1219 Dropping from time repeated/decreasing values at indices: [7731] INFO 2024-04-09 23:10:18,520Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes INFO 2024-04-09 23:10:18,528Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2024-04-09 23:10:18,531Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2024-04-09 23:10:18,535Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude INFO 2024-04-09 23:10:18,536Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable flow_rate empty so skipping INFO 2024-04-09 23:10:18,545Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2024-04-09 23:10:18,554Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage INFO 2024-04-09 23:10:18,555Z lrauvNc4ToNetcdf.py createSeries():299 platform_average_current: 1 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:18,558Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group Onboard parameter platform_average_current renaming to health_platform_average_current INFO 2024-04-09 23:10:18,563Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2024-04-09 23:10:18,567Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle INFO 2024-04-09 23:10:18,570Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2024-04-09 23:10:18,575Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2024-04-09 23:10:18,584Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate INFO 2024-04-09 23:10:18,590Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity INFO 2024-04-09 23:10:18,595Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature INFO 2024-04-09 23:10:18,599Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_salinity renaming to bin_mean_sea_water_salinity INFO 2024-04-09 23:10:18,603Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to bin_median_sea_water_salinity INFO 2024-04-09 23:10:18,607Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_temperature renaming to bin_mean_sea_water_temperature INFO 2024-04-09 23:10:18,611Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to bin_median_sea_water_temperature INFO 2024-04-09 23:10:18,613Z lrauvNc4ToNetcdf.py createSeries():299 downwelling_photosynthetic_photon_flux_in_sea_water: 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:18,629Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR INFO 2024-04-09 23:10:18,635Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2024-04-09 23:10:18,640Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter OutputChl renaming to chl INFO 2024-04-09 23:10:18,646Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470 INFO 2024-04-09 23:10:18,651Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650 INFO 2024-04-09 23:10:18,656Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg470nm renaming to volumescatcoeff117deg470nm INFO 2024-04-09 23:10:18,662Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg650nm renaming to volumescatcoeff117deg650nm INFO 2024-04-09 23:10:18,666Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff470nm renaming to particulatebackscatteringcoeff470nm INFO 2024-04-09 23:10:18,671Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff650nm renaming to particulatebackscatteringcoeff650nm INFO 2024-04-09 23:10:18,674Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_mean_mass_concentration_of_chlorophyll_in_sea_water INFO 2024-04-09 23:10:18,678Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_median_mass_concentration_of_chlorophyll_in_sea_water INFO 2024-04-09 23:10:18,681Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 23:10:18,684Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:18,700Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 23:10:18,702Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:18,718Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 23:10:18,721Z lrauvNc4ToNetcdf.py createSeries():299 depth : 139 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:18,736Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 23:10:18,767Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle: 138 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:18,820Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 23:10:18,854Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle: 138 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:18,908Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 23:10:18,935Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation: 138 v_t values found before 2020-12-10 17:26:00 and after 2020-12-10 18:37:00 INFO 2024-04-09 23:10:18,985Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 23:10:18,986Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/pontus/missionlogs/2020/20201208_20201211/20201210T172643/202012101726_202012101837.nc4 INFO 2024-04-09 23:10:19,098Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 10559 vehicle dead reckoned longitude and latitude values INFO 2024-04-09 23:10:19,193Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 10 longitude_fix and latititude_fix values from /mbari/LRAUV/pontus/missionlogs/2020/20201208_20201211/20201210T172643/202012101726_202012101837.nc4 INFO 2024-04-09 23:10:19,193Z lrauvNc4ToNetcdf.py nudge_coords():786 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2024-04-09 23:10:19,194Z lrauvNc4ToNetcdf.py nudge_coords():807 - - - 870 5.85 - - - INFO 2024-04-09 23:10:19,195Z lrauvNc4ToNetcdf.py nudge_coords():840 0: 0.360 -0.0002726 0.0003669 3410 22.96 1.87 2.96 2020-12-10 17:55:32.685069084 INFO 2024-04-09 23:10:19,198Z lrauvNc4ToNetcdf.py nudge_coords():840 1: 0.366 -0.0000009 -0.0000059 40 0.26 -2.62 -4.16 2020-12-10 17:55:48.841887951 INFO 2024-04-09 23:10:19,200Z lrauvNc4ToNetcdf.py nudge_coords():840 2: 0.385 0.0001081 0.0000390 998 6.77 0.67 1.07 2020-12-10 18:02:35.473666906 INFO 2024-04-09 23:10:19,202Z lrauvNc4ToNetcdf.py nudge_coords():840 3: 0.374 0.0000963 0.0000183 827 5.57 0.38 0.61 2020-12-10 18:08:09.965707064 INFO 2024-04-09 23:10:19,204Z lrauvNc4ToNetcdf.py nudge_coords():840 4: 0.365 0.0000476 -0.0000004 429 2.90 -0.02 -0.03 2020-12-10 18:11:04.240793943 INFO 2024-04-09 23:10:19,206Z lrauvNc4ToNetcdf.py nudge_coords():840 5: 0.373 0.0000277 0.0000313 459 3.10 1.18 1.87 2020-12-10 18:14:10.353734016 INFO 2024-04-09 23:10:19,209Z lrauvNc4ToNetcdf.py nudge_coords():840 6: 0.372 0.0001097 -0.0000019 743 5.00 -0.04 -0.07 2020-12-10 18:19:10.724766970 INFO 2024-04-09 23:10:19,211Z lrauvNc4ToNetcdf.py nudge_coords():840 7: 0.374 0.0000216 -0.0000051 144 0.96 -0.62 -0.98 2020-12-10 18:20:08.936678886 INFO 2024-04-09 23:10:19,213Z lrauvNc4ToNetcdf.py nudge_coords():840 8: 0.372 -0.0002748 0.0000169 2158 14.54 0.14 0.22 2020-12-10 18:34:41.740518093 INFO 2024-04-09 23:10:19,216Z lrauvNc4ToNetcdf.py nudge_coords():871 10: - - - 480 3.23 - - INFO 2024-04-09 23:10:19,216Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 10558 INFO 2024-04-09 23:10:19,246Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/pontus_ac/between/20201210T162643/20201210T193756/data.csv INFO 2024-04-09 23:10:19,341Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database INFO 2024-04-09 23:10:19,347Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['fix_time', 'fix_latitude', 'fix_longitude', 'health_platform_battery_charge', 'health_platform_average_voltage', 'health_platform_average_current', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'salinity', 'temperature', 'bin_mean_sea_water_salinity', 'bin_median_sea_water_salinity', 'bin_mean_sea_water_temperature', 'bin_median_sea_water_temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'volumescatcoeff117deg470nm', 'volumescatcoeff117deg650nm', 'particulatebackscatteringcoeff470nm', 'particulatebackscatteringcoeff650nm', 'bin_mean_mass_concentration_of_chlorophyll_in_sea_water', 'bin_median_mass_concentration_of_chlorophyll_in_sea_water', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2024-04-09 23:10:19,849Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S' INFO 2024-04-09 23:10:20,314Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/pontus/missionlogs/2020/20201208_20201211/20201210T172643/202012101726_202012101837_2S_scieng.nc