INFO 2024-04-09 23:09:41,361Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/pontus/missionlogs/2020/20201208_20201211/20201210T010113/202012100101_202012100127.nc4 file... INFO 2024-04-09 23:09:41,361Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/202012100101_202012100127.nc4 INFO 2024-04-09 23:09:41,800Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/pontus/missionlogs/2020/20201208_20201211/20201210T010113/202012100101_202012100127.nc4 INFO 2024-04-09 23:09:41,826Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 52 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:41,886Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 52 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:41,943Z lrauvNc4ToNetcdf.py createSeries():299 depth : 51 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,000Z lrauvNc4ToNetcdf.py createSeries():299 time : 51 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,057Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 52 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,113Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 52 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,170Z lrauvNc4ToNetcdf.py createSeries():299 depth : 51 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,226Z lrauvNc4ToNetcdf.py createSeries():299 time : 51 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,283Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 52 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,339Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 52 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,395Z lrauvNc4ToNetcdf.py createSeries():299 depth : 51 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,451Z lrauvNc4ToNetcdf.py createSeries():299 time : 51 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,508Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 52 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,566Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 52 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,628Z lrauvNc4ToNetcdf.py createSeries():299 depth : 51 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,687Z lrauvNc4ToNetcdf.py createSeries():299 time : 51 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 WARNING 2024-04-09 23:09:42,727Z lrauvNc4ToNetcdf.py processResampleNc4File():1219 Dropping from latitude repeated/decreasing values at indices: [2888] WARNING 2024-04-09 23:09:42,728Z lrauvNc4ToNetcdf.py processResampleNc4File():1219 Dropping from longitude repeated/decreasing values at indices: [2889] WARNING 2024-04-09 23:09:42,729Z lrauvNc4ToNetcdf.py processResampleNc4File():1219 Dropping from depth repeated/decreasing values at indices: [2888] WARNING 2024-04-09 23:09:42,730Z lrauvNc4ToNetcdf.py processResampleNc4File():1219 Dropping from time repeated/decreasing values at indices: [2888] INFO 2024-04-09 23:09:42,731Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes INFO 2024-04-09 23:09:42,736Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2024-04-09 23:09:42,740Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2024-04-09 23:09:42,743Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude INFO 2024-04-09 23:09:42,747Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsUBAT parameter flow_rate renaming to ubat_flow_rate INFO 2024-04-09 23:09:42,752Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable platform_battery_charge empty so skipping INFO 2024-04-09 23:09:42,756Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable platform_battery_voltage empty so skipping INFO 2024-04-09 23:09:42,757Z lrauvNc4ToNetcdf.py createSeries():299 platform_average_current: 1 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,760Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group Onboard parameter platform_average_current renaming to health_platform_average_current INFO 2024-04-09 23:09:42,764Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2024-04-09 23:09:42,768Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle INFO 2024-04-09 23:09:42,773Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2024-04-09 23:09:42,777Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2024-04-09 23:09:42,782Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate INFO 2024-04-09 23:09:42,786Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity INFO 2024-04-09 23:09:42,790Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature INFO 2024-04-09 23:09:42,794Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_salinity renaming to bin_mean_sea_water_salinity INFO 2024-04-09 23:09:42,797Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to bin_median_sea_water_salinity INFO 2024-04-09 23:09:42,801Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_temperature renaming to bin_mean_sea_water_temperature INFO 2024-04-09 23:09:42,805Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to bin_median_sea_water_temperature INFO 2024-04-09 23:09:42,806Z lrauvNc4ToNetcdf.py createSeries():299 downwelling_photosynthetic_photon_flux_in_sea_water: 51 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,814Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR INFO 2024-04-09 23:09:42,818Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2024-04-09 23:09:42,822Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter OutputChl renaming to chl INFO 2024-04-09 23:09:42,826Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470 INFO 2024-04-09 23:09:42,830Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650 INFO 2024-04-09 23:09:42,833Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg470nm renaming to volumescatcoeff117deg470nm INFO 2024-04-09 23:09:42,837Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg650nm renaming to volumescatcoeff117deg650nm INFO 2024-04-09 23:09:42,841Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff470nm renaming to particulatebackscatteringcoeff470nm INFO 2024-04-09 23:09:42,844Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff650nm renaming to particulatebackscatteringcoeff650nm INFO 2024-04-09 23:09:42,847Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_mean_mass_concentration_of_chlorophyll_in_sea_water INFO 2024-04-09 23:09:42,851Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_median_mass_concentration_of_chlorophyll_in_sea_water INFO 2024-04-09 23:09:42,854Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 23:09:42,856Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 52 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,863Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 23:09:42,864Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 52 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,872Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 23:09:42,873Z lrauvNc4ToNetcdf.py createSeries():299 depth : 52 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,881Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 23:09:42,908Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle: 50 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:42,959Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 23:09:42,979Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle: 50 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:43,022Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 23:09:43,041Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation: 50 v_t values found before 2020-12-10 01:01:00 and after 2020-12-10 01:27:00 INFO 2024-04-09 23:09:43,085Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 23:09:43,085Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/pontus/missionlogs/2020/20201208_20201211/20201210T010113/202012100101_202012100127.nc4 INFO 2024-04-09 23:09:43,184Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 3872 vehicle dead reckoned longitude and latitude values INFO 2024-04-09 23:09:43,278Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 2 longitude_fix and latititude_fix values from /mbari/LRAUV/pontus/missionlogs/2020/20201208_20201211/20201210T010113/202012100101_202012100127.nc4 INFO 2024-04-09 23:09:43,278Z lrauvNc4ToNetcdf.py nudge_coords():786 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2024-04-09 23:09:43,280Z lrauvNc4ToNetcdf.py nudge_coords():807 - - - 135 0.90 - - - INFO 2024-04-09 23:09:43,281Z lrauvNc4ToNetcdf.py nudge_coords():840 0: 0.376 0.0001652 0.0000635 3106 20.95 0.36 0.56 2020-12-10 01:23:05.961824894 INFO 2024-04-09 23:09:43,283Z lrauvNc4ToNetcdf.py nudge_coords():871 2: - - - 629 4.23 - - INFO 2024-04-09 23:09:43,284Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 3870 INFO 2024-04-09 23:09:43,309Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/pontus_ac/between/20201210T000114/20201210T022720/data.csv INFO 2024-04-09 23:09:43,403Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database INFO 2024-04-09 23:09:43,408Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['fix_time', 'fix_latitude', 'fix_longitude', 'ubat_flow_rate', 'health_platform_average_current', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'salinity', 'temperature', 'bin_mean_sea_water_salinity', 'bin_median_sea_water_salinity', 'bin_mean_sea_water_temperature', 'bin_median_sea_water_temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'volumescatcoeff117deg470nm', 'volumescatcoeff117deg650nm', 'particulatebackscatteringcoeff470nm', 'particulatebackscatteringcoeff650nm', 'bin_mean_mass_concentration_of_chlorophyll_in_sea_water', 'bin_median_mass_concentration_of_chlorophyll_in_sea_water', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2024-04-09 23:09:43,927Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S' INFO 2024-04-09 23:09:44,524Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/pontus/missionlogs/2020/20201208_20201211/20201210T010113/202012100101_202012100127_2S_scieng.nc