INFO 2024-04-09 23:09:04,235Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/pontus/missionlogs/2020/20201130_20201204/20201204T071353/202012040713_202012041813.nc4 file... INFO 2024-04-09 23:09:04,236Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/202012040713_202012041813.nc4 INFO 2024-04-09 23:09:04,793Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/pontus/missionlogs/2020/20201130_20201204/20201204T071353/202012040713_202012041813.nc4 INFO 2024-04-09 23:09:04,844Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:04,985Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:05,134Z lrauvNc4ToNetcdf.py createSeries():299 depth : 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:05,283Z lrauvNc4ToNetcdf.py createSeries():299 time : 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:05,422Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:05,548Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:05,668Z lrauvNc4ToNetcdf.py createSeries():299 depth : 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:05,787Z lrauvNc4ToNetcdf.py createSeries():299 time : 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:05,911Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:06,040Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:06,182Z lrauvNc4ToNetcdf.py createSeries():299 depth : 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:06,313Z lrauvNc4ToNetcdf.py createSeries():299 time : 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:06,459Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:06,596Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:06,726Z lrauvNc4ToNetcdf.py createSeries():299 depth : 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:06,862Z lrauvNc4ToNetcdf.py createSeries():299 time : 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:06,969Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes INFO 2024-04-09 23:09:06,992Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2024-04-09 23:09:06,997Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2024-04-09 23:09:07,001Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude INFO 2024-04-09 23:09:07,035Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsUBAT parameter flow_rate renaming to ubat_flow_rate INFO 2024-04-09 23:09:07,048Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2024-04-09 23:09:07,059Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage INFO 2024-04-09 23:09:07,065Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group Onboard parameter platform_average_current renaming to health_platform_average_current INFO 2024-04-09 23:09:07,076Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2024-04-09 23:09:07,095Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle INFO 2024-04-09 23:09:07,101Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2024-04-09 23:09:07,140Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2024-04-09 23:09:07,218Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate INFO 2024-04-09 23:09:07,252Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity INFO 2024-04-09 23:09:07,284Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature INFO 2024-04-09 23:09:07,299Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_salinity renaming to bin_mean_sea_water_salinity INFO 2024-04-09 23:09:07,314Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to bin_median_sea_water_salinity INFO 2024-04-09 23:09:07,329Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_temperature renaming to bin_mean_sea_water_temperature INFO 2024-04-09 23:09:07,344Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to bin_median_sea_water_temperature INFO 2024-04-09 23:09:07,358Z lrauvNc4ToNetcdf.py createSeries():299 downwelling_photosynthetic_photon_flux_in_sea_water: 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:07,443Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR INFO 2024-04-09 23:09:07,476Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2024-04-09 23:09:07,511Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter OutputChl renaming to chl INFO 2024-04-09 23:09:07,542Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470 INFO 2024-04-09 23:09:07,573Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650 INFO 2024-04-09 23:09:07,604Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg470nm renaming to volumescatcoeff117deg470nm INFO 2024-04-09 23:09:07,635Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg650nm renaming to volumescatcoeff117deg650nm INFO 2024-04-09 23:09:07,659Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff470nm renaming to particulatebackscatteringcoeff470nm INFO 2024-04-09 23:09:07,682Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff650nm renaming to particulatebackscatteringcoeff650nm INFO 2024-04-09 23:09:07,691Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_mean_mass_concentration_of_chlorophyll_in_sea_water INFO 2024-04-09 23:09:07,700Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_median_mass_concentration_of_chlorophyll_in_sea_water INFO 2024-04-09 23:09:07,705Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 23:09:07,719Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:07,804Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 23:09:07,818Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:07,902Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 23:09:07,916Z lrauvNc4ToNetcdf.py createSeries():299 depth : 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:07,996Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 23:09:08,053Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle: 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:08,159Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 23:09:08,208Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle: 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:08,316Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 23:09:08,368Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation: 32 v_t values found before 2020-12-04 07:13:00 and after 2020-12-04 18:13:00 INFO 2024-04-09 23:09:08,483Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 23:09:08,484Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/pontus/missionlogs/2020/20201130_20201204/20201204T071353/202012040713_202012041813.nc4 INFO 2024-04-09 23:09:08,750Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 97681 vehicle dead reckoned longitude and latitude values INFO 2024-04-09 23:09:08,877Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 31 longitude_fix and latititude_fix values from /mbari/LRAUV/pontus/missionlogs/2020/20201130_20201204/20201204T071353/202012040713_202012041813.nc4 INFO 2024-04-09 23:09:08,878Z lrauvNc4ToNetcdf.py nudge_coords():786 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2024-04-09 23:09:08,880Z lrauvNc4ToNetcdf.py nudge_coords():807 - - - 3 0.01 - - - INFO 2024-04-09 23:09:08,882Z lrauvNc4ToNetcdf.py nudge_coords():840 0: 0.360 0.0000471 -0.0000326 577 4.21 -0.84 -1.44 2020-12-04 07:18:07.311747074 INFO 2024-04-09 23:09:08,886Z lrauvNc4ToNetcdf.py nudge_coords():840 1: 0.379 0.0012172 -0.0053996 7131 48.02 -11.84 -20.84 2020-12-04 08:06:08.886902094 INFO 2024-04-09 23:09:08,891Z lrauvNc4ToNetcdf.py nudge_coords():840 2: 0.386 -0.0012820 0.0029658 775 5.45 57.49 100.75 2020-12-04 08:11:36.607157946 INFO 2024-04-09 23:09:08,894Z lrauvNc4ToNetcdf.py nudge_coords():840 3: 0.372 -0.0028039 -0.0055009 8276 55.73 -10.27 -18.29 2020-12-04 09:07:20.551341057 INFO 2024-04-09 23:09:08,900Z lrauvNc4ToNetcdf.py nudge_coords():840 4: 0.356 -0.0001836 -0.0001028 81 0.54 -19.80 -35.29 2020-12-04 09:07:53.347698927 INFO 2024-04-09 23:09:08,904Z lrauvNc4ToNetcdf.py nudge_coords():840 5: 0.368 -0.0025595 -0.0047699 8951 60.28 -8.10 -14.66 2020-12-04 10:08:10.564378023 INFO 2024-04-09 23:09:08,910Z lrauvNc4ToNetcdf.py nudge_coords():840 6: 0.382 -0.0010518 -0.0019815 7041 47.41 -4.22 -7.74 2020-12-04 10:55:35.578224897 INFO 2024-04-09 23:09:08,915Z lrauvNc4ToNetcdf.py nudge_coords():840 7: 0.350 -0.0000266 -0.0000195 365 2.66 -0.74 -1.36 2020-12-04 10:58:15.415700912 INFO 2024-04-09 23:09:08,918Z lrauvNc4ToNetcdf.py nudge_coords():840 8: 0.336 0.0008733 0.0000739 7168 48.27 0.15 0.28 2020-12-04 11:46:31.706058979 INFO 2024-04-09 23:09:08,923Z lrauvNc4ToNetcdf.py nudge_coords():840 9: 0.391 -0.0000060 -0.0000192 344 2.45 -0.79 -1.45 2020-12-04 11:48:59.297410965 INFO 2024-04-09 23:09:08,927Z lrauvNc4ToNetcdf.py nudge_coords():840 10: 0.379 0.0011899 0.0003725 7856 52.90 0.71 1.30 2020-12-04 12:41:53.556188107 INFO 2024-04-09 23:09:08,932Z lrauvNc4ToNetcdf.py nudge_coords():840 11: 0.272 -0.0000074 0.0000086 100 0.67 1.29 2.37 2020-12-04 12:42:34.208947897 INFO 2024-04-09 23:09:08,935Z lrauvNc4ToNetcdf.py nudge_coords():840 12: 0.353 0.0001193 -0.0000624 760 5.12 -1.23 -2.26 2020-12-04 12:47:41.723509073 INFO 2024-04-09 23:09:08,938Z lrauvNc4ToNetcdf.py nudge_coords():840 13: 0.335 0.0000012 -0.0000082 461 3.11 -0.27 -0.49 2020-12-04 12:50:48.448260069 INFO 2024-04-09 23:09:08,941Z lrauvNc4ToNetcdf.py nudge_coords():840 14: 0.357 0.0000244 0.0000032 928 6.25 0.05 0.09 2020-12-04 12:57:03.650697947 INFO 2024-04-09 23:09:08,945Z lrauvNc4ToNetcdf.py nudge_coords():840 15: 0.382 -0.0000069 -0.0000027 85 0.57 -0.49 -0.90 2020-12-04 12:57:37.985323906 INFO 2024-04-09 23:09:08,948Z lrauvNc4ToNetcdf.py nudge_coords():840 16: 0.375 0.0009658 0.0000504 7696 51.82 0.10 0.18 2020-12-04 13:49:27.796494007 INFO 2024-04-09 23:09:08,953Z lrauvNc4ToNetcdf.py nudge_coords():840 17: 0.360 0.0000056 0.0000059 83 0.55 1.06 1.96 2020-12-04 13:50:01.378693104 INFO 2024-04-09 23:09:08,956Z lrauvNc4ToNetcdf.py nudge_coords():840 18: 0.369 0.0010537 -0.0002032 7579 51.03 -0.40 -0.74 2020-12-04 14:41:03.774710894 INFO 2024-04-09 23:09:08,961Z lrauvNc4ToNetcdf.py nudge_coords():840 19: 0.370 0.0000050 0.0000096 85 0.57 1.70 3.15 2020-12-04 14:41:38.137526989 INFO 2024-04-09 23:09:08,965Z lrauvNc4ToNetcdf.py nudge_coords():840 20: 0.371 0.0008695 0.0000388 7701 51.85 0.07 0.14 2020-12-04 15:33:29.756184101 INFO 2024-04-09 23:09:08,970Z lrauvNc4ToNetcdf.py nudge_coords():840 21: 0.408 -0.0001180 -0.0000586 1008 6.78 -0.86 -1.60 2020-12-04 15:40:17.199234009 INFO 2024-04-09 23:09:08,973Z lrauvNc4ToNetcdf.py nudge_coords():840 22: 0.375 0.0000433 -0.0000072 831 5.60 -0.13 -0.24 2020-12-04 15:45:53.512162923 INFO 2024-04-09 23:09:08,977Z lrauvNc4ToNetcdf.py nudge_coords():840 23: 0.379 0.0001379 -0.0003196 3325 22.39 -1.42 -2.65 2020-12-04 16:08:17.196326971 INFO 2024-04-09 23:09:08,980Z lrauvNc4ToNetcdf.py nudge_coords():840 24: 0.342 0.0002520 -0.0004900 9542 64.35 -0.76 -1.41 2020-12-04 17:12:38.497989893 INFO 2024-04-09 23:09:08,986Z lrauvNc4ToNetcdf.py nudge_coords():840 25: 0.369 -0.0000109 0.0000022 144 1.11 0.19 0.36 2020-12-04 17:13:45.586429119 INFO 2024-04-09 23:09:08,989Z lrauvNc4ToNetcdf.py nudge_coords():840 26: 0.382 0.0000555 -0.0000881 904 6.08 -1.44 -2.68 2020-12-04 17:19:50.905138969 INFO 2024-04-09 23:09:08,992Z lrauvNc4ToNetcdf.py nudge_coords():840 27: 0.368 -0.0000231 0.0000175 198 1.44 1.21 2.24 2020-12-04 17:21:17.975455999 INFO 2024-04-09 23:09:08,996Z lrauvNc4ToNetcdf.py nudge_coords():840 28: 0.372 0.0003101 -0.0003210 6366 42.87 -0.75 -1.39 2020-12-04 18:04:10.319134951 INFO 2024-04-09 23:09:09,001Z lrauvNc4ToNetcdf.py nudge_coords():840 29: 0.383 0.0000574 0.0000259 1027 7.08 0.37 0.68 2020-12-04 18:11:15.448051929 INFO 2024-04-09 23:09:09,004Z lrauvNc4ToNetcdf.py nudge_coords():871 31: - - - 289 1.94 - - INFO 2024-04-09 23:09:09,004Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 97680 INFO 2024-04-09 23:09:09,038Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/pontus_ac/between/20201204T061354/20201204T191312/data.csv INFO 2024-04-09 23:09:09,139Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database INFO 2024-04-09 23:09:09,148Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['fix_time', 'fix_latitude', 'fix_longitude', 'ubat_flow_rate', 'health_platform_battery_charge', 'health_platform_average_voltage', 'health_platform_average_current', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'salinity', 'temperature', 'bin_mean_sea_water_salinity', 'bin_median_sea_water_salinity', 'bin_mean_sea_water_temperature', 'bin_median_sea_water_temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'volumescatcoeff117deg470nm', 'volumescatcoeff117deg650nm', 'particulatebackscatteringcoeff470nm', 'particulatebackscatteringcoeff650nm', 'bin_mean_mass_concentration_of_chlorophyll_in_sea_water', 'bin_median_mass_concentration_of_chlorophyll_in_sea_water', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2024-04-09 23:09:09,529Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S' INFO 2024-04-09 23:09:09,729Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/pontus/missionlogs/2020/20201130_20201204/20201204T071353/202012040713_202012041813_2S_scieng.nc