INFO 2024-04-09 23:08:34,429Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/pontus/missionlogs/2020/20201130_20201204/20201201T191125/202012011911_202012012309.nc4 file... INFO 2024-04-09 23:08:34,429Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/202012011911_202012012309.nc4 INFO 2024-04-09 23:08:34,873Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/pontus/missionlogs/2020/20201130_20201204/20201201T191125/202012011911_202012012309.nc4 INFO 2024-04-09 23:08:34,910Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:34,997Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:35,074Z lrauvNc4ToNetcdf.py createSeries():299 depth : 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:35,150Z lrauvNc4ToNetcdf.py createSeries():299 time : 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:35,229Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:35,299Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:35,371Z lrauvNc4ToNetcdf.py createSeries():299 depth : 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:35,443Z lrauvNc4ToNetcdf.py createSeries():299 time : 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:35,516Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:35,587Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:35,660Z lrauvNc4ToNetcdf.py createSeries():299 depth : 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:35,735Z lrauvNc4ToNetcdf.py createSeries():299 time : 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:35,816Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:35,900Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:35,977Z lrauvNc4ToNetcdf.py createSeries():299 depth : 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:36,063Z lrauvNc4ToNetcdf.py createSeries():299 time : 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:36,122Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes INFO 2024-04-09 23:08:36,134Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2024-04-09 23:08:36,138Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2024-04-09 23:08:36,142Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude INFO 2024-04-09 23:08:36,156Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsUBAT parameter flow_rate renaming to ubat_flow_rate INFO 2024-04-09 23:08:36,166Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2024-04-09 23:08:36,174Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage INFO 2024-04-09 23:08:36,176Z lrauvNc4ToNetcdf.py createSeries():299 platform_average_current: 1 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:36,179Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group Onboard parameter platform_average_current renaming to health_platform_average_current INFO 2024-04-09 23:08:36,187Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2024-04-09 23:08:36,195Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle INFO 2024-04-09 23:08:36,200Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2024-04-09 23:08:36,207Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2024-04-09 23:08:36,235Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate INFO 2024-04-09 23:08:36,250Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity INFO 2024-04-09 23:08:36,264Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature INFO 2024-04-09 23:08:36,271Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_salinity renaming to bin_mean_sea_water_salinity INFO 2024-04-09 23:08:36,277Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to bin_median_sea_water_salinity INFO 2024-04-09 23:08:36,284Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_temperature renaming to bin_mean_sea_water_temperature INFO 2024-04-09 23:08:36,290Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to bin_median_sea_water_temperature INFO 2024-04-09 23:08:36,296Z lrauvNc4ToNetcdf.py createSeries():299 downwelling_photosynthetic_photon_flux_in_sea_water: 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:36,329Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR INFO 2024-04-09 23:08:36,345Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2024-04-09 23:08:36,358Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter OutputChl renaming to chl INFO 2024-04-09 23:08:36,373Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470 INFO 2024-04-09 23:08:36,387Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650 INFO 2024-04-09 23:08:36,401Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg470nm renaming to volumescatcoeff117deg470nm INFO 2024-04-09 23:08:36,415Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg650nm renaming to volumescatcoeff117deg650nm INFO 2024-04-09 23:08:36,426Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff470nm renaming to particulatebackscatteringcoeff470nm INFO 2024-04-09 23:08:36,437Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff650nm renaming to particulatebackscatteringcoeff650nm INFO 2024-04-09 23:08:36,442Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_mean_mass_concentration_of_chlorophyll_in_sea_water INFO 2024-04-09 23:08:36,447Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_median_mass_concentration_of_chlorophyll_in_sea_water INFO 2024-04-09 23:08:36,451Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 23:08:36,457Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:36,491Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 23:08:36,496Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:36,530Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 23:08:36,536Z lrauvNc4ToNetcdf.py createSeries():299 depth : 142 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:36,570Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 23:08:36,605Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle: 140 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:36,668Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 23:08:36,706Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle: 140 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:36,775Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 23:08:36,811Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation: 140 v_t values found before 2020-12-01 19:11:00 and after 2020-12-01 23:09:00 INFO 2024-04-09 23:08:36,885Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 23:08:36,885Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/pontus/missionlogs/2020/20201130_20201204/20201201T191125/202012011911_202012012309.nc4 INFO 2024-04-09 23:08:37,072Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 34323 vehicle dead reckoned longitude and latitude values INFO 2024-04-09 23:08:37,179Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 15 longitude_fix and latititude_fix values from /mbari/LRAUV/pontus/missionlogs/2020/20201130_20201204/20201201T191125/202012011911_202012012309.nc4 INFO 2024-04-09 23:08:37,179Z lrauvNc4ToNetcdf.py nudge_coords():786 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2024-04-09 23:08:37,180Z lrauvNc4ToNetcdf.py nudge_coords():807 - - - 0 0.00 - - - INFO 2024-04-09 23:08:37,181Z lrauvNc4ToNetcdf.py nudge_coords():840 0: 0.379 0.0000307 -0.0001052 113 0.76 -15.90 -25.76 2020-12-01 19:18:52.096071005 INFO 2024-04-09 23:08:37,183Z lrauvNc4ToNetcdf.py nudge_coords():840 1: 0.357 0.0000102 -0.0000532 78 0.52 -11.72 -18.99 2020-12-01 19:19:23.638812065 INFO 2024-04-09 23:08:37,186Z lrauvNc4ToNetcdf.py nudge_coords():840 2: 0.355 0.0008289 0.0008966 6403 43.11 2.37 3.85 2020-12-01 20:02:30.872549057 INFO 2024-04-09 23:08:37,188Z lrauvNc4ToNetcdf.py nudge_coords():840 3: 0.400 0.0000497 -0.0003532 310 2.17 -18.60 -30.20 2020-12-01 20:04:41.273034096 INFO 2024-04-09 23:08:37,191Z lrauvNc4ToNetcdf.py nudge_coords():840 4: 0.388 0.0003643 -0.0033856 9554 64.44 -5.98 -9.74 2020-12-01 21:09:07.969017029 INFO 2024-04-09 23:08:37,194Z lrauvNc4ToNetcdf.py nudge_coords():840 5: 0.380 0.0000137 -0.0009883 807 5.86 -19.18 -31.27 2020-12-01 21:14:59.776283026 INFO 2024-04-09 23:08:37,197Z lrauvNc4ToNetcdf.py nudge_coords():840 6: 0.374 -0.0007236 -0.0010255 3842 25.87 -4.56 -7.35 2020-12-01 21:40:52.149256945 INFO 2024-04-09 23:08:37,199Z lrauvNc4ToNetcdf.py nudge_coords():840 7: 0.389 -0.0000445 -0.0012653 1071 7.23 -20.10 -32.41 2020-12-01 21:48:06.628082037 INFO 2024-04-09 23:08:37,202Z lrauvNc4ToNetcdf.py nudge_coords():840 8: 0.382 0.0008515 -0.0010410 416 2.80 -42.68 -68.86 2020-12-01 21:50:55.112322092 INFO 2024-04-09 23:08:37,205Z lrauvNc4ToNetcdf.py nudge_coords():840 9: 0.389 -0.0000667 -0.0002445 262 1.77 -15.90 -25.66 2020-12-01 21:52:41.436233044 INFO 2024-04-09 23:08:37,208Z lrauvNc4ToNetcdf.py nudge_coords():840 10: 0.372 0.0020706 0.0002842 10299 69.37 0.46 0.76 2020-12-01 23:02:03.801700115 INFO 2024-04-09 23:08:37,211Z lrauvNc4ToNetcdf.py nudge_coords():840 11: 0.373 0.0001305 -0.0000393 188 1.26 -3.47 -5.76 2020-12-01 23:03:20.033088923 INFO 2024-04-09 23:08:37,214Z lrauvNc4ToNetcdf.py nudge_coords():840 12: 0.336 -0.0000191 -0.0000493 113 0.75 -7.30 -12.12 2020-12-01 23:04:05.734776974 INFO 2024-04-09 23:08:37,216Z lrauvNc4ToNetcdf.py nudge_coords():840 13: 0.381 0.0009176 0.0001258 601 4.06 3.46 5.75 2020-12-01 23:08:09.444233894 INFO 2024-04-09 23:08:37,219Z lrauvNc4ToNetcdf.py nudge_coords():871 15: - - - 265 1.78 - - INFO 2024-04-09 23:08:37,219Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 34322 INFO 2024-04-09 23:08:37,249Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/pontus_ac/between/20201201T181125/20201202T000957/data.csv INFO 2024-04-09 23:08:37,351Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database INFO 2024-04-09 23:08:37,357Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['fix_time', 'fix_latitude', 'fix_longitude', 'ubat_flow_rate', 'health_platform_battery_charge', 'health_platform_average_voltage', 'health_platform_average_current', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'salinity', 'temperature', 'bin_mean_sea_water_salinity', 'bin_median_sea_water_salinity', 'bin_mean_sea_water_temperature', 'bin_median_sea_water_temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'volumescatcoeff117deg470nm', 'volumescatcoeff117deg650nm', 'particulatebackscatteringcoeff470nm', 'particulatebackscatteringcoeff650nm', 'bin_mean_mass_concentration_of_chlorophyll_in_sea_water', 'bin_median_mass_concentration_of_chlorophyll_in_sea_water', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2024-04-09 23:08:38,066Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S' INFO 2024-04-09 23:08:38,856Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/pontus/missionlogs/2020/20201130_20201204/20201201T191125/202012011911_202012012309_2S_scieng.nc