INFO 2019-01-02 01:20:42,944Z lrauvNc4ToNetcdf.py processResampleNc4File():879 Reading /mbari/LRAUV/opah/missionlogs/2017/20171114_20171122/20171121T164241/201711211642_201711211712.nc4 file...
INFO 2019-01-02 01:20:45,749Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
WARNING 2019-01-02 01:20:45,749Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/opah/missionlogs/2017/20171114_20171122/20171121T164241/201711211642_201711211712.nc4
WARNING 2019-01-02 01:20:45,750Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/opah/missionlogs/2017/20171114_20171122/20171121T164241/201711211642_201711211712.nc4
INFO 2019-01-02 01:20:45,751Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable sea_water_salinity empty so skipping
INFO 2019-01-02 01:20:45,753Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable sea_water_temperature empty so skipping
WARNING 2019-01-02 01:20:45,753Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/opah/missionlogs/2017/20171114_20171122/20171121T164241/201711211642_201711211712.nc4
INFO 2019-01-02 01:20:45,845Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2019-01-02 01:20:45,868Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-01-02 01:20:45,877Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2019-01-02 01:20:45,883Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2019-01-02 01:20:45,947Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-01-02 01:20:45,988Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2019-01-02 01:20:46,015Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-01-02 01:20:46,022Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-01-02 01:20:46,028Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-01-02 01:20:46,028Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'platform_average_current' not in /mbari/LRAUV/opah/missionlogs/2017/20171114_20171122/20171121T164241/201711211642_201711211712.nc4
INFO 2019-01-02 01:20:46,057Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-01-02 01:20:46,068Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2019-01-02 01:20:46,078Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-01-02 01:20:46,094Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-01-02 01:20:46,107Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2019-01-02 01:20:46,108Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2019-01-02 01:20:46,121Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-01-02 01:20:46,134Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-01-02 01:20:46,149Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
INFO 2019-01-02 01:20:46,151Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2019-01-02 01:20:46,258Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2019-01-02 01:20:46,356Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2019-01-02 01:20:46,436Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2019-01-02 01:20:46,602Z lrauvNc4ToNetcdf.py createNav():449 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-01-02 01:20:46,752Z lrauvNc4ToNetcdf.py createNav():449 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-01-02 01:20:46,882Z lrauvNc4ToNetcdf.py createNav():449 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-01-02 01:20:46,883Z lrauvNc4ToNetcdf.py nudge_coords():544 /mbari/LRAUV/opah/missionlogs/2017/20171114_20171122/20171121T164241/201711211642_201711211712.nc4
INFO 2019-01-02 01:20:47,127Z lrauvNc4ToNetcdf.py var_series():523 Removing bad longitude times from /mbari/LRAUV/opah/missionlogs/2017/20171114_20171122/20171121T164241/201711211642_201711211712.nc4 ([index], [values]): [825], ['2513-11-15 16:14:18.102400']
INFO 2019-01-02 01:20:47,239Z lrauvNc4ToNetcdf.py var_series():523 Removing bad latitude times from /mbari/LRAUV/opah/missionlogs/2017/20171114_20171122/20171121T164241/201711211642_201711211712.nc4 ([index], [values]): [825], ['2513-11-15 16:14:18.102400']
INFO 2019-01-02 01:20:47,307Z lrauvNc4ToNetcdf.py nudge_coords():552 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-01-02 01:20:47,308Z lrauvNc4ToNetcdf.py nudge_coords():568                  -            -            -         0    0.00              -              -
WARNING 2019-01-02 01:20:47,310Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.343605042) < max_sec_diff_at_end (10)
INFO 2019-01-02 01:20:47,311Z lrauvNc4ToNetcdf.py nudge_coords():589    0:        0.344   -0.0000470   -0.0001493       168    1.26         -13.24         -21.89
WARNING 2019-01-02 01:20:47,315Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.319484949) < max_sec_diff_at_end (10)
INFO 2019-01-02 01:20:47,316Z lrauvNc4ToNetcdf.py nudge_coords():589    1:        0.319   -0.0006795   -0.0006625      1066    8.51          -8.72         -14.43
WARNING 2019-01-02 01:20:47,319Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.34250307) < max_sec_diff_at_end (10)
INFO 2019-01-02 01:20:47,320Z lrauvNc4ToNetcdf.py nudge_coords():589    2:        0.343   -0.0006380   -0.0005420       987    7.11          -8.53         -14.12
INFO 2019-01-02 01:20:47,323Z lrauvNc4ToNetcdf.py nudge_coords():613    4:            -            -            -      1524   11.05              -              -
INFO 2019-01-02 01:20:47,323Z lrauvNc4ToNetcdf.py nudge_coords():617 Points in final series = 3745
INFO 2019-01-02 01:20:47,368Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():490 http://odss.mbari.org/trackingdb/position/opah_ac/between/20171121T154253/20171121T181246/data.csv
INFO 2019-01-02 01:20:47,412Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():513 Found 0 position values from the Tracking database
INFO 2019-01-02 01:20:47,415Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 ['oxygen', 'PAR', 'chlorophyll', 'bbp470', 'bbp650', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-01-02 01:20:47,748Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Wrote /mbari/LRAUV/opah/missionlogs/2017/20171114_20171122/20171121T164241/201711211642_201711211712_2S_scieng.nc