##-- file opened 2022-05-13T22:55:56.583Z @15:55:54.84 -> showStatus @15:55:56.46 -> Cmd.loadCartridge -10 @15:55:56.52 Gate.power :main,:ON,limit to 5000mA @15:55:56.54 Gate.power :analytic1,:ON,limit to 5000mA @15:55:56.56 Gate.power :analytic2,:ON,limit to 5000mA @15:55:56.59 Gate.power :analytic3,:ON,limit to 5000mA @15:55:56.73 Powering core bus @15:55:58.99 SPR Module 1, FW Rev. B, FPGA Rev. C @15:55:59.44 Archive.configure :default @15:55:59.57 Air.configure :default @15:55:59.68 Lysis1.configure :default @15:55:59.78 Lysis2.configure :default @15:55:59.92 Plunge.configure :default @15:56:00.06 SamplePump.configure :default @15:56:00.19 Toroid.configure :default @15:56:00.32 Carousel.configure :default @15:56:00.44 Pressure.configure :default @15:56:00.57 ExtraPump.configure :default @15:56:00.68 PinPort.configure :default @15:56:00.74 All elf controllers running firmware version 4.79 @15:56:00.77 Gate.power :motor,:ON,limit to 5000mA @15:56:00.94 Archive.in :default @15:56:01.25 Archive.home.jog 0 @15:56:01.44 Toroid.in :default @15:56:01.49 Plunge.in :default @15:56:01.53 Lysis1.in :default @15:56:01.59 Air.in :default @15:56:01.64 PinPort.in :default @15:56:01.69 Lysis2.in :default @15:56:01.88 Toroid.home.jog 0 @15:56:01.91 Plunge.home.jog 0 @15:56:01.94 Lysis1.home.jog 0 @15:56:01.97 Air.home.jog 0 @15:56:02.00 PinPort.home.jog 0 @15:56:02.06 Lysis2.home.jog 0 @15:56:02.52 Archive.in :homing @15:56:02.73 Archive.jog 1395 @15:56:02.81 PinPort.in :homing @15:56:02.86 Plunge.in :homing @15:56:02.89 Toroid.in :homing @15:56:02.93 Air.in :homing @15:56:02.97 Lysis1.in :homing @15:56:03.03 Lysis2.in :homing @15:56:03.22 PinPort.jog -105 @15:56:03.27 Plunge.jog 113 @15:56:03.30 Toroid.jog 635 @15:56:03.33 Air.jog 1383 @15:56:03.36 Lysis2.jog 1405 @15:56:03.39 Lysis1.jog 1376 @15:56:03.65 PinPort.setRawPosition! 0 @15:56:03.70 PinPort.seek :home @15:56:03.78 PinPort.in :default @15:56:03.87 Plunge.setRawPosition! 50 @15:56:03.92 Plunge.seek :home @15:56:04.15 Archive.setRawPosition! 50 @15:56:04.20 Archive.seek :home @15:56:04.28 Plunge.in :default @15:56:04.48 Archive.in :default @15:56:04.64 Lysis2.setRawPosition! 50 @15:56:04.71 Lysis2.seek :home @15:56:04.80 Air.setRawPosition! 50 @15:56:04.82 Lysis1.setRawPosition! 50 @15:56:04.89 Air.seek :home @15:56:04.94 Lysis1.seek :home @15:56:05.08 Lysis2.in :default @15:56:05.24 Air.in :default @15:56:05.33 Lysis1.in :default @15:56:05.62 Toroid.setRawPosition! 0 @15:56:05.67 Toroid.seek :home @15:56:05.76 Toroid.in :default @15:56:05.89 Toroid.seek :clear @15:56:07.51 Carousel.in :default @15:56:07.57 Carousel.home.jog 0 @15:56:08.05 Carousel.in :default @15:56:08.11 Carousel.seek 11 @15:56:08.27 Selecting Cartridge 60 @15:56:08.53 Carousel.seek 60 @15:56:18.81 Lysis1.in :fast @15:56:18.87 Lysis1.seek :locked @15:56:21.48 Plunge.seek :locked @15:56:21.61 Air.in :fast @15:56:21.67 Air.seek :locked @15:56:24.13 Powering cartridge bus @15:56:26.74 Gate.setIR 1750,5000,0,6 @15:56:26.86 Gate.setIR 0,5000,0,6 @15:56:26.92 PuckHeater.configure :default @15:56:26.98 Gate.power :heat,:ON,limit to 5000mA @15:56:27.68 Mounted lysis Cartridge base#L5-0018, top#L8-0070, board#Q05043 @15:56:27.72 Using default puck heat loss curve for HeatingAccelInCarousel @15:56:36.86 -> Cmd.startFiltering 17.07@15:56:37.11 Preparing to filter cartridge 60 @15:56:37.37 Priming sample loop w/100ml, bypass w/10ml @15:56:37.38 SamplePump.setPosition! 0ml @15:56:37.43 Bypass.open @15:56:38.87 Intake.open @15:56:39.59 Sea 2.7m deep (18.7psia) @15:56:39.60 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @15:56:42.17 Vacuum tare is 54% of full scale @15:56:42.30 Pressure.in :default @15:56:42.36 Pressure.hold @15:56:42.54 SamplePump.in :prime @15:56:42.61 SamplePump.seek 10ml,59 seconds @15:56:51.22 Pressure.stop @15:56:51.27 SamplePump.setPosition! 0ml @15:56:51.31 Exhaust.open @15:56:52.73 Bypass.close @15:56:54.20 Pressure.in :default @15:56:54.26 Pressure.hold @15:56:54.38 Sea 2.7m deep (18.7psia) @15:56:54.52 SamplePump.in :prime @15:56:54.58 SamplePump.seek 100ml,5:16 @15:58:18.76 Pressure.stop @15:58:18.82 Bypass.open @15:58:19.49 Intake.close @15:58:20.24 Toroid.in :hold @15:58:20.30 Toroid.seek :crack @15:58:21.81 Toroid.seek :cartridge @15:58:22.91 Toroid.in :default @15:58:22.97 Toroid.seek :clear @15:58:25.32 Pressurizing cartridge to 26psi above 18.8psia @15:58:25.34 SamplePump.setPosition! 0ml @15:58:25.39 Intake.open @15:58:26.06 Bypass.close @15:58:26.73 Exhaust.close @15:58:27.53 Pressure.in :default @15:58:27.59 Pressure.hold @15:58:27.77 SamplePump.in :charge @15:58:27.84 SamplePump.seek 2.3ml,42 seconds @15:58:41.79 Pressure.stop @15:58:41.84 Intake.close @15:58:42.56 Pressurized cartridge with 0.941ml to 26.3psi @15:58:42.58 Isolated @42.5psia (23.7psi) @15:58:42.60 Verifying cartridge holds at least 0.65..0.85 of 42.5psia @15:58:42.63 Waiting up to 20 seconds for cartridge pressure to stabilize +/-1.50psi @15:58:47.26 Sampling 100.0ml @15:58:47.28 SamplePump.setPosition! 0ml @15:58:47.34 Exhaust.open @15:58:48.09 Intake.open @15:58:48.88 Pressure.in :default @15:58:48.94 Pressure.hold @15:58:49.05 Sea 3.3m deep (19.6psia) @15:58:49.19 SamplePump.in :sample @15:58:49.27 SamplePump.seek 100ml,8:50 @15:58:51.90 Cartridge 60 filtering 1/100ml at 0.51ml/s with 19.6psi vacuum 5.6m deep (22.9psia) @15:59:51.90 Cartridge 60 filtering 30/100ml at 0.42ml/s with 28.6psi vacuum @16:00:51.91 Cartridge 60 filtering 54/100ml at 0.32ml/s with 28.9psi vacuum @16:01:51.90 Cartridge 60 filtering 72/100ml at 0.24ml/s with 21.8psi vacuum @16:02:51.90 Cartridge 60 filtering 86/100ml at 0.22ml/s with 23.6psi vacuum 2.1m deep (17.9psia) @16:02:54.29 Flow averaged 0.35ml/s over 4:06 @16:02:54.32 Waiting up to 9 seconds for vacuum to reduce from 26.3 to 18.0psi @16:02:54.90 Relieved excess vacuum in .6 seconds @16:02:54.92 SamplePump.seek 100ml,1:40 @16:03:00.15 Flow estimate reduced to 0.28ml/s @16:03:00.19 Waiting up to 10 seconds for vacuum to reduce from 27.0 to 18.0psi @16:03:00.76 Relieved excess vacuum in .6 seconds @16:03:00.79 SamplePump.seek 100ml,1:34 @16:03:04.07 Flow estimate reduced to 0.22ml/s @16:03:04.11 Waiting up to 10 seconds for vacuum to reduce from 26.9 to 18.0psi @16:03:04.68 Relieved excess vacuum in .6 seconds @16:03:04.70 SamplePump.seek 100ml,1:31 @16:03:09.25 Flow estimate reduced to 0.18ml/s @16:03:09.27 Intake.close @16:03:09.34 Exhaust.close @16:03:09.51 Toroid.in :hold @16:03:09.58 Toroid.seek :bypass @16:03:11.20 Toroid.in :default @16:03:11.27 Toroid.seek :clear @16:03:12.89 Cartridge::Sampler::Clogged in FILTERING -- Cartridge clogged @16:03:12.90 Pressure.stop @16:03:13.09 Sampled 88.8ml @16:03:15.25 -> Cmd.startProcessing @16:03:16.68 SPR.command \"read_sequences\" @16:03:16.78 SPR.command \"stats_on\" @16:03:16.88 SPR.command \"start 0 1\" @16:03:17.63 SPR.start /var/log/esp/spr22may1316h.spr.bz2 @16:03:19.63 Handoff.select :waste @16:03:26.31 Syringe tare is 17% of full scale @16:03:26.33 PinPort.in :locking @16:03:26.39 PinPort.seek :locked @16:03:26.88 Archive.in :fast @16:03:26.96 Lysis2.in :fast @16:03:27.04 Archive.seek :full @16:03:27.09 Lysis1.seek 1350uL @16:03:27.15 Lysis2.seek :full @16:03:29.14 Plunge.seek :reagent @16:03:30.01 Evacuating puck with filter bubble point of 50psi @16:03:30.03 PinPort.seek :locked @16:03:30.12 Handoff.select :waste @16:03:36.70 Air syringe pumping up to 1 stroke to reach 8psi @16:03:36.71 Air stroke #1 of 1 @16:03:36.80 Air.in :pressurize @16:03:36.86 Air.seek :pressurized @16:03:48.44 0.9psi after pressurize @16:03:48.48 Air.in :compress @16:03:48.58 Air.seek :evac @16:03:52.66 0.8psi after compress @16:04:05.23 0.1psi after compress (stable) @16:04:05.25 Air.in :default @16:04:05.31 Air.hold @16:04:05.52 at 0.1psi Opened to waste @16:04:05.54 Handoff.select :blocked @16:04:05.68 Archive syringe pumping up to 8 strokes to reach 50psi @16:04:05.69 Archive stroke #1 of 8 @16:04:05.78 Archive.in :pressurize @16:04:05.84 Archive.seek :pressurized @16:04:18.72 9.5psi after pressurize @16:04:18.75 Archive.in :compress @16:04:18.83 Archive.seek :empty @16:04:33.51 30.7psi after compress @16:04:46.08 32.9psi after compress (stable) @16:04:46.10 Archive.in :gulp @16:04:46.22 Archive.seek :topVent @16:04:53.38 33.3psi after gulp @16:05:05.95 33.1psi after gulp (stable) @16:05:05.96 Archive stroke #2 of 8 @16:05:06.07 Archive.in :pressurize @16:05:06.14 Archive.seek :pressurized @16:05:18.98 32.9psi after pressurize @16:05:19.01 Archive.in :compress @16:05:19.08 Archive.seek :empty @16:05:32.03 Reached 50.2 of 50.0psi after pumping 3423uL (1.98 strokes) @16:05:32.05 Archive.in :default @16:05:32.12 Archive.hold @16:05:32.18 Handoff.select :waste @16:05:39.74 delay 1:00 @16:06:39.75 Handoff.select :blocked @16:07:02.43 Handoff.select :waste @16:07:02.55 2.4psi at evacEnd @16:07:02.56 Handoff.select :blocked @16:07:02.69 Archive.in :fast @16:07:02.76 Archive.seek :topVent @16:07:16.30 Stable @2.9psi after Handoff blocked @16:07:16.31 Archive syringe pumping up to 8 strokes to reach 33psi @16:07:16.33 Archive stroke #1 of 8 @16:07:16.43 Archive.in :pressurize @16:07:16.50 Archive.seek :pressurized @16:07:29.38 4.0psi after pressurize @16:07:29.40 Archive.in :compress @16:07:29.47 Archive.seek :empty @16:07:44.16 12.1psi after compress @16:08:15.73 28.8psi after compress (stable) @16:08:15.75 Archive.in :gulp @16:08:15.82 Archive.seek :topVent @16:08:22.98 29.8psi after gulp @16:08:35.54 30.5psi after gulp (stable) @16:08:35.56 Archive stroke #2 of 8 @16:08:35.65 Archive.in :pressurize @16:08:35.71 Archive.seek :pressurized @16:08:48.57 31.2psi after pressurize @16:08:48.59 Archive.in :compress @16:08:48.66 Archive.seek :empty @16:09:00.61 Reached 33.0 of 32.9psi after pumping 3401uL (1.97 strokes) @16:09:00.65 Archive.in :default @16:09:00.71 Archive.hold @16:09:00.78 Handoff.select :waste @16:09:15.52 delay 1:00 @16:10:15.54 Handoff.select :blocked @16:10:38.22 Handoff.select :waste @16:10:38.34 1.2psi at evacEnd @16:10:38.36 Air.seek :fullVent @16:10:39.78 Archive.in :fast @16:10:39.85 Archive.seek :topVent @16:10:46.74 Seawater evacuated, Presure above/below filter released. Lysis begins @16:10:46.83 Lysis1.in :slow @16:10:46.90 Lysis1.seek 1050uL @16:11:16.93 delay 5 seconds @16:11:21.94 Handoff.select :blocked @16:11:22.12 Lysis1.seek 450uL @16:12:22.10 delay 3 seconds @16:12:25.17 Air.in mix with 1.40048 parts Lysis1 @16:12:25.59 Air.seek :evac @16:12:25.63 Lysis1.seek 300uL @16:12:40.74 Lysis1.seek :empty @16:13:10.83 Lysis buffer delivered @30.1psi @16:13:10.84 Polling Can every 2:00 @16:13:11.39 PuckHeater.configure :default #ambient 20.2C @16:13:11.44 PuckHeater.seek 79.8C @16:14:04.98 PuckHeater.hold 2:00,79.8C @16:16:04.88 Polling Can every 2:00 @16:16:05.42 PuckHeater.configure :default #ambient 20.3C @16:16:05.47 PuckHeater.hold 30 seconds,78.8C @16:16:35.63 Polling Can every 2:00 @16:16:36.17 PuckHeater.configure :default #ambient 20.3C @16:16:36.22 PuckHeater.hold 30 seconds,78.2C @16:17:06.37 Polling Can every 2:00 @16:17:06.91 PuckHeater.hold 10:00,77.7C @16:27:06.26 Lysis complete. Syringe pressure @41.0psi @16:27:06.27 Handoff.select :blocked @16:27:06.32 Archive syringe pumping up to 5 strokes to reach 40psi @16:27:06.33 Archive stroke #1 of 5 @16:27:06.44 Archive.in :pressurize @16:27:06.52 Archive.seek :pressurized @16:27:06.69 Reached 41.0 of 40.0psi after pumping 0uL (0.00 strokes) @16:27:06.71 Archive.in :default @16:27:06.78 Archive.hold @16:27:06.85 delay 2 seconds @16:27:08.87 Archive.in :fast @16:27:08.93 Archive.seek :full @16:27:09.11 Lysis1.seek 138uL @16:27:22.98 delay 1 second @16:27:24.00 Archive.seek :full @16:27:24.04 Lysis1.seek :empty @16:27:38.02 Initial air pressure @40.6psi @16:27:38.10 Lysis1.in :extract @16:27:38.18 Lysis1.seek 600uL,nil @16:27:39.85 Archive syringe pumping up to 6 strokes to reach 25psi @16:27:39.86 Archive stroke #1 of 6 @16:27:39.95 Archive.in :pressurize @16:27:40.04 Archive.seek :pressurized @16:27:52.90 16.1psi after pressurize @16:27:52.91 Archive.in :compress @16:27:52.99 Archive.seek :empty @16:28:01.98 Reached 26.6 of 25.0psi after pumping 1608uL (0.93 strokes) @16:28:01.99 Archive.in :default @16:28:02.07 Archive.hold @16:28:02.81 Archive syringe pumping up to 6 strokes to reach 25psi @16:28:02.82 Archive stroke #1 of 6 @16:28:02.92 Archive.in :compress @16:28:02.98 Archive.seek :empty @16:28:08.02 Archive.in :default @16:28:08.07 Archive.hold @16:28:08.22 Initial 600uL lysate @17.6psi @16:28:08.23 Handoff.select :blocked @16:28:08.33 Initial air pressure @18.7psi @16:28:08.40 Lysis1.seek 825uL,nil @16:28:09.58 Archive syringe pumping up to 6 strokes to reach 17psi @16:28:09.59 Archive stroke #1 of 6 @16:28:09.69 Archive.in :compress @16:28:09.76 Archive.seek :empty @16:28:10.68 16.9psi after compress @16:28:18.09 Archive.in :default @16:28:18.14 Archive.hold @16:28:18.34 Recovered 825uL lysate @17.1psi @16:28:18.37 Air.in :halfSpeed @16:28:18.44 Air.seek :fullVent @16:28:20.65 Puck Top Vented, bottom @1.3psi @16:28:20.66 Handoff.select :waste @16:28:20.79 delay 5 seconds @16:28:25.85 Handoff open to waste, bottom @0.2psi @16:28:25.89 Air.in :default @16:28:25.97 Air.seek :evac @16:28:27.39 Lysis1.in :DAmix @16:28:27.49 Lysis2.in :DAmix @16:28:27.90 Lysis1.seek 575uL @16:28:27.98 Lysis2.seek 1480uL @16:29:03.02 delay 5 seconds @16:29:08.03 Handoff.select SPR @16:29:08.14 SPR.command \"start 2 14\" @16:29:08.90 SPR stabilized @16:29:09.03 delay 10 seconds @16:29:19.04 SPR.command \"start 1 0\" @16:29:22.26 Waiting up to 4:00 for SPR to enter state 1 @16:31:24.66 SPR.command \"hold_on\" @16:31:26.05 SPR Dilution 1 of 1 -- Experiment 1 with 300.0uL L1 + 300.0uL L2 @16:31:26.50 Lysis1.seek 275uL @16:31:26.55 Lysis2.seek 1180uL @16:32:08.58 delay 15 seconds @16:32:23.60 SPR.command \"hold_off\" @16:32:26.70 Waiting up to 38:00 for SPR to enter state 7 @16:53:16.56 SPRsummary:-141.799,-58.4227,-52.952,-66.2467 after 3143s @16:59:53.78 SPR analysis completed @16:59:59.49 Ended log spr22may1316h.spr.bz2 @16:59:59.50 SPR.command \"stats_off\" @17:00:01.07 -> Cmd.stop @17:00:01.17 Handoff.select :close @17:00:01.30 Gate.power :heat,:OFF @17:00:01.32 Gate.power :cartridge,:OFF @17:00:01.40 Carousel.seek 60 @17:00:01.59 Plunge.seek :locked @17:00:02.45 PinPort.in :unlocking @17:00:02.52 PinPort.seek :clear @17:00:03.06 Archive.in :unlocking @17:00:03.19 Archive.seek :clear @17:00:03.22 Air.in :unlocking @17:00:03.39 Air.seek :clear @17:00:03.48 Lysis1.in :unlocking @17:00:03.59 Lysis1.seek :clear @17:00:03.63 Lysis2.in :unlocking @17:00:03.74 Lysis2.seek :clear @17:00:07.34 Gate.power :motor,:OFF @17:00:07.36 Gate.power :core,:OFF @17:00:07.38 Gate.power :analytic1,:OFF @17:00:07.40 Gate.power :analytic2,:OFF @17:00:07.43 Gate.power :analytic3,:OFF @17:00:07.45 Gate.power :main,:OFF @17:00:07.47 Safely stopped and ready to power off ##-- file closed 2022-05-14T00:06:27.417Z ##-- file opened 2022-05-14T00:06:27.425Z @17:06:25.28 -> showStatus @17:06:27.30 -> Cmd.loadCartridge -10 @17:06:27.36 Gate.power :main,:ON,limit to 5000mA @17:06:27.38 Gate.power :analytic1,:ON,limit to 5000mA @17:06:27.41 Gate.power :analytic2,:ON,limit to 5000mA @17:06:27.43 Gate.power :analytic3,:ON,limit to 5000mA @17:06:27.57 Powering core bus @17:06:29.83 SPR Module 1, FW Rev. B, FPGA Rev. C @17:06:30.30 Archive.configure :default @17:06:30.43 Air.configure :default @17:06:30.53 Lysis1.configure :default @17:06:30.64 Lysis2.configure :default @17:06:30.77 Plunge.configure :default @17:06:30.90 SamplePump.configure :default @17:06:31.03 Toroid.configure :default @17:06:31.16 Carousel.configure :default @17:06:31.29 Pressure.configure :default @17:06:31.42 ExtraPump.configure :default @17:06:31.52 PinPort.configure :default @17:06:31.58 All elf controllers running firmware version 4.79 @17:06:31.60 Gate.power :motor,:ON,limit to 5000mA @17:06:31.80 Archive.in :default @17:06:32.11 Archive.home.jog 0 @17:06:32.31 Toroid.in :default @17:06:32.33 Plunge.in :default @17:06:32.36 Lysis1.in :default @17:06:32.42 PinPort.in :default @17:06:32.47 Air.in :default @17:06:32.52 Lysis2.in :default @17:06:32.71 Plunge.home.jog 0 @17:06:32.74 Toroid.home.jog 0 @17:06:32.76 Lysis1.home.jog 0 @17:06:32.79 PinPort.home.jog 0 @17:06:32.81 Air.home.jog 0 @17:06:32.86 Lysis2.home.jog 0 @17:06:33.35 Archive.in :homing @17:06:33.56 Plunge.in :homing @17:06:33.59 Archive.jog 1395 @17:06:33.62 Toroid.in :homing @17:06:33.67 Lysis1.in :homing @17:06:33.70 Air.in :homing @17:06:33.74 PinPort.in :homing @17:06:33.78 Lysis2.in :homing @17:06:34.01 Plunge.jog 1567 @17:06:34.05 Toroid.jog 637 @17:06:34.07 Lysis1.jog 1377 @17:06:34.11 Air.jog 1389 @17:06:34.14 PinPort.jog -106 @17:06:34.17 Lysis2.jog 1399 @17:06:34.52 PinPort.setRawPosition! 0 @17:06:34.57 PinPort.seek :home @17:06:34.66 PinPort.in :default @17:06:34.96 Archive.setRawPosition! 50 @17:06:35.01 Archive.seek :home @17:06:35.28 Archive.in :default @17:06:35.38 Lysis1.setRawPosition! 50 @17:06:35.44 Lysis1.seek :home @17:06:35.54 Lysis2.setRawPosition! 50 @17:06:35.57 Plunge.setRawPosition! 50 @17:06:35.59 Air.setRawPosition! 50 @17:06:35.69 Lysis2.seek :home @17:06:35.74 Plunge.seek :home @17:06:35.83 Air.seek :home @17:06:35.96 Lysis1.in :default @17:06:36.07 Lysis2.in :default @17:06:36.15 Plunge.in :default @17:06:36.23 Air.in :default @17:06:36.36 Toroid.setRawPosition! 0 @17:06:36.41 Toroid.seek :home @17:06:36.51 Toroid.in :default @17:06:36.65 Toroid.seek :clear @17:06:38.26 Carousel.in :default @17:06:38.33 Carousel.home.jog 0 @17:06:38.81 Carousel.in :default @17:06:38.88 Carousel.seek 60 @17:06:39.05 Selecting Cartridge 59 @17:06:39.32 Carousel.seek 59 @17:06:39.80 Lysis1.in :fast @17:06:39.87 Lysis1.seek :locked @17:06:42.46 Plunge.seek :locked @17:06:42.59 Air.in :fast @17:06:42.67 Air.seek :locked @17:06:45.13 Powering cartridge bus @17:06:47.73 Gate.setIR 1750,5000,0,6 @17:06:47.85 Gate.setIR 0,5000,0,6 @17:06:47.91 PuckHeater.configure :default @17:06:47.97 Gate.power :heat,:ON,limit to 5000mA @17:06:48.64 Mounted lysis Cartridge board#Q05092 @17:06:48.67 Using default puck heat loss curve for HeatingAccelInCarousel @17:07:07.70 -> Cmd.startFiltering @17:07:07.94 Preparing to filter cartridge 59 @17:07:08.21 Priming sample loop w/100ml, bypass w/10ml @17:07:08.23 SamplePump.setPosition! 0ml @17:07:08.28 Bypass.open @17:07:09.71 Intake.open @17:07:10.41 Sea 2.7m deep (18.6psia) @17:07:10.43 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @17:07:13.01 Vacuum tare is 54% of full scale @17:07:13.14 Pressure.in :default @17:07:13.20 Pressure.hold @17:07:13.38 SamplePump.in :prime @17:07:13.45 SamplePump.seek 10ml,59 seconds @17:07:22.06 Pressure.stop @17:07:22.11 SamplePump.setPosition! 0ml @17:07:22.16 Exhaust.open @17:07:23.60 Bypass.close @17:07:25.10 Pressure.in :default @17:07:25.16 Pressure.hold @17:07:25.27 Sea 2.6m deep (18.5psia) @17:07:25.41 SamplePump.in :prime @17:07:25.48 SamplePump.seek 100ml,5:16 @17:08:50.60 Pressure.stop @17:08:50.66 Bypass.open @17:08:51.34 Intake.close @17:08:52.07 Toroid.in :hold @17:08:52.13 Toroid.seek :crack @17:08:53.64 Toroid.seek :cartridge @17:08:54.73 Toroid.in :default @17:08:55.19 Toroid.seek :clear @17:08:57.15 Pressurizing cartridge to 26psi above 18.6psia @17:08:57.17 SamplePump.setPosition! 0ml @17:08:57.21 Intake.open @17:08:57.90 Bypass.close @17:08:58.61 Exhaust.close @17:08:59.43 Pressure.in :default @17:08:59.49 Pressure.hold @17:08:59.67 SamplePump.in :charge @17:08:59.74 SamplePump.seek 2.3ml,42 seconds @17:09:13.25 Pressure.stop @17:09:13.30 Intake.close @17:09:14.03 Pressurized cartridge with 0.881ml to 28.2psi @17:09:14.04 Isolated @38.7psia (20.1psi) @17:09:14.05 Verifying cartridge holds at least 0.65..0.85 of 38.7psia @17:09:14.09 Waiting up to 20 seconds for cartridge pressure to stabilize +/-1.50psi @17:09:18.71 Sampling 100.0ml @17:09:18.72 SamplePump.setPosition! 0ml @17:09:18.78 Exhaust.open @17:09:19.54 Intake.open @17:09:20.34 Pressure.in :default @17:09:20.40 Pressure.hold @17:09:20.52 Sea 3.0m deep (19.1psia) @17:09:20.67 SamplePump.in :sample @17:09:20.74 SamplePump.seek 100ml,8:50 @17:09:23.36 Cartridge 59 filtering 1/100ml at 0.48ml/s with 26.3psi vacuum 2.8m deep (18.8psia) @17:10:23.37 Cartridge 59 filtering 30/100ml at 0.41ml/s with 23.8psi vacuum 2.1m deep (17.9psia) @17:11:23.37 Cartridge 59 filtering 54/100ml at 0.31ml/s with 25.0psi vacuum 1.8m deep (17.3psia) @17:12:23.37 Cartridge 59 filtering 72/100ml at 0.22ml/s with 27.5psi vacuum @17:13:23.37 Cartridge 59 filtering 86/100ml at 0.20ml/s with 26.4psi vacuum 2.8m deep (18.8psia) @17:13:30.05 Flow averaged 0.35ml/s over 4:10 @17:13:30.09 Waiting up to 9 seconds for vacuum to reduce from 26.5 to 18.0psi @17:13:30.66 Relieved excess vacuum in .6 seconds @17:13:30.68 SamplePump.seek 100ml,1:33 @17:13:40.19 Flow averaged 0.21ml/s over 10 seconds @17:13:40.23 Waiting up to 11 seconds for vacuum to reduce from 27.3 to 18.0psi @17:13:40.81 Relieved excess vacuum in .6 seconds @17:13:40.83 SamplePump.seek 100ml,1:23 @17:13:45.43 Flow estimate reduced to 0.17ml/s @17:13:45.45 Intake.close @17:13:45.49 Exhaust.close @17:13:45.70 Toroid.in :hold @17:13:45.77 Toroid.seek :bypass @17:13:47.39 Toroid.in :default @17:13:47.45 Toroid.seek :clear @17:13:49.06 Cartridge::Sampler::Clogged in FILTERING -- Cartridge clogged @17:13:49.07 Pressure.stop @17:13:49.26 Sampled 90.3ml @17:13:51.30 -> Cmd.startProcessing @17:13:52.74 SPR.command \"read_sequences\" @17:13:53.30 SPR.command \"stats_on\" @17:13:53.41 SPR.command \"start 0 1\" @17:13:54.16 SPR.start /var/log/esp/spr22may1317h.spr.bz2 @17:13:56.67 Handoff.select :waste @17:14:03.34 Syringe tare is 17% of full scale @17:14:03.36 PinPort.in :locking @17:14:03.44 PinPort.seek :locked @17:14:03.92 Archive.in :fast @17:14:03.95 Lysis2.in :fast @17:14:04.03 Lysis1.seek 1350uL @17:14:04.10 Archive.seek :full @17:14:04.16 Lysis2.seek :full @17:14:06.18 Plunge.seek :reagent @17:14:07.09 Evacuating puck with filter bubble point of 50psi @17:14:07.11 PinPort.seek :locked @17:14:07.21 Handoff.select :waste @17:14:13.79 Air syringe pumping up to 1 stroke to reach 8psi @17:14:13.80 Air stroke #1 of 1 @17:14:13.90 Air.in :pressurize @17:14:13.97 Air.seek :pressurized @17:14:25.55 0.6psi after pressurize @17:14:25.57 Air.in :compress @17:14:25.65 Air.seek :evac @17:14:29.75 0.7psi after compress @17:14:42.33 0.0psi after compress (stable) @17:14:42.34 Air.in :default @17:14:42.41 Air.hold @17:14:42.60 at -0.0psi Opened to waste @17:14:42.61 Handoff.select :blocked @17:14:42.74 Archive syringe pumping up to 8 strokes to reach 50psi @17:14:42.75 Archive stroke #1 of 8 @17:14:42.84 Archive.in :pressurize @17:14:42.91 Archive.seek :pressurized @17:14:55.76 9.0psi after pressurize @17:14:55.78 Archive.in :compress @17:14:55.86 Archive.seek :empty @17:15:10.54 31.5psi after compress @17:15:23.11 32.5psi after compress (stable) @17:15:23.13 Archive.in :gulp @17:15:23.20 Archive.seek :topVent @17:15:30.37 28.8psi after gulp @17:16:12.93 11.6psi after gulp (stable) @17:16:12.94 Archive stroke #2 of 8 @17:16:13.04 Archive.in :pressurize @17:16:13.10 Archive.seek :pressurized @17:16:25.96 11.5psi after pressurize @17:16:25.98 Archive.in :compress @17:16:26.06 Archive.seek :empty @17:16:40.78 34.2psi after compress @17:16:53.35 34.9psi after compress (stable) @17:16:53.37 Archive.in :gulp @17:16:53.45 Archive.seek :topVent @17:17:00.61 30.4psi after gulp @17:18:07.18 5.6psi after gulp (stable) @17:18:07.19 Archive stroke #3 of 8 @17:18:07.30 Archive.in :pressurize @17:18:07.39 Archive.seek :pressurized @17:18:20.24 6.7psi after pressurize @17:18:20.26 Archive.in :compress @17:18:20.33 Archive.seek :empty @17:18:35.01 28.3psi after compress @17:18:47.58 29.1psi after compress (stable) @17:18:47.60 Archive.in :gulp @17:18:47.67 Archive.seek :topVent @17:18:54.83 26.0psi after gulp @17:19:56.90 6.1psi after gulp (stable) @17:19:56.91 Archive stroke #4 of 8 @17:19:57.03 Archive.in :pressurize @17:19:57.11 Archive.seek :pressurized @17:20:09.95 7.0psi after pressurize @17:20:09.98 Archive.in :compress @17:20:10.05 Archive.seek :empty @17:20:24.73 28.5psi after compress @17:20:37.30 29.3psi after compress (stable) @17:20:37.32 Archive.in :gulp @17:20:37.40 Archive.seek :topVent @17:20:44.56 26.0psi after gulp @17:21:46.13 5.8psi after gulp (stable) @17:21:46.14 Archive stroke #5 of 8 @17:21:46.23 Archive.in :pressurize @17:21:46.30 Archive.seek :pressurized @17:21:59.15 6.9psi after pressurize @17:21:59.17 Archive.in :compress @17:21:59.24 Archive.seek :empty @17:22:13.93 28.3psi after compress @17:22:26.52 29.0psi after compress (stable) @17:22:26.54 Archive.in :gulp @17:22:26.63 Archive.seek :topVent @17:22:33.78 25.7psi after gulp @17:23:35.36 5.7psi after gulp (stable) @17:23:35.37 Archive stroke #6 of 8 @17:23:35.48 Archive.in :pressurize @17:23:35.57 Archive.seek :pressurized @17:23:48.43 6.8psi after pressurize @17:23:48.45 Archive.in :compress @17:23:48.53 Archive.seek :empty @17:24:03.19 28.1psi after compress @17:24:15.76 28.8psi after compress (stable) @17:24:15.78 Archive.in :gulp @17:24:15.85 Archive.seek :topVent @17:24:23.00 25.5psi after gulp @17:25:24.07 5.7psi after gulp (stable) @17:25:24.08 Archive stroke #7 of 8 @17:25:24.18 Archive.in :pressurize @17:25:24.25 Archive.seek :pressurized @17:25:37.12 6.8psi after pressurize @17:25:37.14 Archive.in :compress @17:25:37.22 Archive.seek :empty @17:25:51.89 28.1psi after compress @17:26:04.46 28.8psi after compress (stable) @17:26:04.48 Archive.in :gulp @17:26:04.55 Archive.seek :topVent @17:26:11.71 25.5psi after gulp @17:27:12.78 5.7psi after gulp (stable) @17:27:12.79 Archive stroke #8 of 8 @17:27:12.88 Archive.in :pressurize @17:27:12.95 Archive.seek :pressurized @17:27:25.79 6.8psi after pressurize @17:27:25.81 Archive.in :compress @17:27:25.89 Archive.seek :empty @17:27:40.56 28.1psi after compress @17:27:53.13 28.8psi after compress (stable) @17:27:53.14 Archive.in :default @17:27:53.21 Archive.hold @17:27:53.34 Handoff.select :blocked @17:27:53.39 Underpressure in PROCESSING -- Reached only 28.8 of 50.0psi after pumping 13840uL @17:27:53.52 Thread::ParentDied in stopSPRafterError -- :PROCESSING @17:27:57.29 -> Cmd.stop @17:27:57.72 Thread::ParentDied in SPRlogger -- :PROCESSING @17:27:57.77 Gate.power :heat,:OFF @17:27:57.79 Gate.power :cartridge,:OFF @17:27:57.88 Carousel.seek 59 @17:27:58.06 Plunge.seek :locked @17:27:58.92 PinPort.in :unlocking @17:27:58.99 PinPort.seek :clear @17:27:59.53 Archive.in :unlocking @17:27:59.66 Archive.seek :clear @17:28:00.10 Air.in :unlocking @17:28:00.23 Air.seek :clear @17:28:00.35 Lysis1.in :unlocking @17:28:00.44 Lysis1.seek :clear @17:28:00.47 Lysis2.in :unlocking @17:28:00.58 Lysis2.seek :clear @17:28:04.22 Gate.power :motor,:OFF @17:28:04.24 Gate.power :core,:OFF @17:28:04.25 Gate.power :analytic1,:OFF @17:28:04.28 Gate.power :analytic2,:OFF @17:28:04.31 Gate.power :analytic3,:OFF @17:28:04.33 Gate.power :main,:OFF @17:28:04.35 Safely stopped and ready to power off ##-- file closed 2022-05-14T01:12:13.877Z ##-- file opened 2022-05-14T01:12:13.881Z @18:12:11.74 -> showStatus @18:12:13.76 -> Cmd.loadCartridge -6 @18:12:13.82 Gate.power :main,:ON,limit to 5000mA @18:12:13.84 Gate.power :analytic1,:ON,limit to 5000mA @18:12:13.86 Gate.power :analytic2,:ON,limit to 5000mA @18:12:13.89 Gate.power :analytic3,:ON,limit to 5000mA @18:12:14.03 Powering core bus @18:12:16.30 SPR Module 1, FW Rev. B, FPGA Rev. C @18:12:16.75 Archive.configure :default @18:12:16.88 Air.configure :default @18:12:16.99 Lysis1.configure :default @18:12:17.09 Lysis2.configure :default @18:12:17.22 Plunge.configure :default @18:12:17.34 SamplePump.configure :default @18:12:17.47 Toroid.configure :default @18:12:17.60 Carousel.configure :default @18:12:17.73 Pressure.configure :default @18:12:17.85 ExtraPump.configure :default @18:12:17.96 PinPort.configure :default @18:12:18.02 All elf controllers running firmware version 4.79 @18:12:18.04 Gate.power :motor,:ON,limit to 5000mA @18:12:18.21 Archive.in :default @18:12:18.54 Archive.home.jog 0 @18:12:18.73 Toroid.in :default @18:12:18.77 Plunge.in :default @18:12:18.81 Lysis1.in :default @18:12:18.89 Air.in :default @18:12:18.92 PinPort.in :default @18:12:18.95 Lysis2.in :default @18:12:19.15 Toroid.home.jog 0 @18:12:19.18 Plunge.home.jog 0 @18:12:19.20 Lysis1.home.jog 0 @18:12:19.24 PinPort.home.jog 0 @18:12:19.26 Air.home.jog 0 @18:12:19.29 Lysis2.home.jog 0 @18:12:19.67 Archive.in :homing @18:12:19.85 Toroid.in :homing @18:12:19.88 Plunge.in :homing @18:12:19.94 Archive.jog 1394 @18:12:20.00 PinPort.in :homing @18:12:20.17 Toroid.jog 643 @18:12:20.23 Plunge.jog 1554 @18:12:20.27 PinPort.jog -105 @18:12:20.45 Lysis2.in :homing @18:12:20.48 Air.in :homing @18:12:20.51 Lysis1.in :homing @18:12:20.62 Lysis2.jog 1394 @18:12:20.66 Lysis1.jog 1377 @18:12:20.71 Air.jog 1386 @18:12:20.85 PinPort.setRawPosition! 0 @18:12:20.90 PinPort.seek :home @18:12:20.98 PinPort.in :default @18:12:21.29 Archive.setRawPosition! 50 @18:12:21.34 Archive.seek :home @18:12:21.52 Plunge.setRawPosition! 50 @18:12:21.57 Plunge.seek :home @18:12:21.66 Archive.in :default @18:12:21.85 Lysis2.setRawPosition! 50 @18:12:21.91 Lysis2.seek :home @18:12:22.01 Plunge.in :default @18:12:22.04 Air.setRawPosition! 50 @18:12:22.07 Lysis1.setRawPosition! 50 @18:12:22.20 Lysis1.seek :home @18:12:22.22 Air.seek :home @18:12:22.38 Lysis2.in :default @18:12:22.46 Toroid.setRawPosition! 0 @18:12:22.53 Toroid.seek :home @18:12:22.64 Lysis1.in :default @18:12:22.67 Air.in :default @18:12:22.70 Toroid.in :default @18:12:23.15 Toroid.seek :clear @18:12:24.77 Carousel.in :default @18:12:24.83 Carousel.home.jog 0 @18:12:25.31 Carousel.in :default @18:12:25.38 Carousel.seek 59 @18:12:25.52 Selecting Cartridge 58 @18:12:25.78 Carousel.seek 58 @18:12:26.27 Lysis1.in :fast @18:12:26.33 Lysis1.seek :locked @18:12:28.94 Plunge.seek :locked @18:12:29.06 Air.in :fast @18:12:29.13 Air.seek :locked @18:12:31.59 Powering cartridge bus @18:12:34.18 Gate.setIR 1750,5000,0,6 @18:12:34.30 Gate.setIR 0,5000,0,6 @18:12:34.36 Gate.power :cartridge,:OFF @18:12:34.89 Mounted archive Cartridge @18:12:53.35 -> Cmd.startFiltering @18:12:53.59 Preparing to filter cartridge 58 @18:12:53.85 Priming sample loop w/100ml, bypass w/10ml @18:12:53.86 SamplePump.setPosition! 0ml @18:12:53.92 Bypass.open @18:12:55.35 Intake.open @18:12:56.07 Sea 2.6m deep (18.5psia) @18:12:56.09 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @18:12:58.66 Vacuum tare is 54% of full scale @18:12:58.80 Pressure.in :default @18:12:58.85 Pressure.hold @18:12:59.03 SamplePump.in :prime @18:12:59.10 SamplePump.seek 10ml,59 seconds @18:13:07.70 Pressure.stop @18:13:07.76 SamplePump.setPosition! 0ml @18:13:07.81 Exhaust.open @18:13:09.22 Bypass.close @18:13:10.72 Pressure.in :default @18:13:10.78 Pressure.hold @18:13:10.89 Sea 2.6m deep (18.5psia) @18:13:11.03 SamplePump.in :prime @18:13:11.10 SamplePump.seek 100ml,5:16 @18:14:36.49 Pressure.stop @18:14:36.55 Bypass.open @18:14:37.24 Intake.close @18:14:37.96 Toroid.in :hold @18:14:38.02 Toroid.seek :crack @18:14:39.53 Toroid.seek :cartridge @18:14:40.62 Toroid.in :default @18:14:40.68 Toroid.seek :clear @18:14:43.04 Pressurizing cartridge to 26psi above 18.7psia @18:14:43.05 SamplePump.setPosition! 0ml @18:14:43.10 Intake.open @18:14:43.76 Bypass.close @18:14:44.44 Exhaust.close @18:14:45.25 Pressure.in :default @18:14:45.31 Pressure.hold @18:14:45.49 SamplePump.in :charge @18:14:45.56 SamplePump.seek 2.3ml,42 seconds @18:14:52.07 Pressure.stop @18:14:52.13 Intake.close @18:14:52.84 Pressurized cartridge with 0.202ml to 27.2psi @18:14:52.85 Isolated @40.7psia (22.0psi) @18:14:52.86 Verifying cartridge holds at least 0.65..0.85 of 40.7psia @18:14:52.89 Waiting up to 20 seconds for cartridge pressure to stabilize +/-1.50psi @18:14:57.48 Cartridge pressure fell 1% to 40.5psia @18:14:57.56 Sampling 100.0ml @18:14:57.57 SamplePump.setPosition! 0ml @18:14:57.63 Exhaust.open @18:14:58.36 Intake.open @18:14:59.12 Pressure.in :default @18:14:59.18 Pressure.hold @18:14:59.30 Sea 3.2m deep (19.5psia) @18:14:59.44 SamplePump.in :sample @18:14:59.51 SamplePump.seek 100ml,8:50 @18:15:02.14 Cartridge 58 filtering 1/100ml at 0.52ml/s with 26.9psi vacuum 3.3m deep (19.5psia) @18:16:02.15 Cartridge 58 filtering 30/100ml at 0.48ml/s with 19.0psi vacuum 4.7m deep (21.6psia) @18:17:02.14 Cartridge 58 filtering 56/100ml at 0.37ml/s with 22.9psi vacuum @18:18:02.15 Cartridge 58 filtering 77/100ml at 0.35ml/s with 21.0psi vacuum 3.0m deep (19.1psia) @18:19:02.15 Cartridge 58 filtering 94/100ml at 0.22ml/s with 23.2psi vacuum @18:19:29.59 Pressure.stop @18:19:29.72 Intake.close @18:19:29.76 Exhaust.close @18:19:29.92 Toroid.in :hold @18:19:29.98 Toroid.seek :bypass @18:19:31.60 Toroid.in :default @18:19:31.66 Toroid.seek :clear @18:19:33.27 Sampled 100.0ml @18:19:34.55 -> Cmd.startProcessing @18:19:34.96 Plunge.seek :reagent @18:19:35.76 Sample loop closed. Ready to Deliver Reagents @18:19:35.77 Archive.seek :sealed @18:19:39.72 Archive.seek :evac @18:19:53.75 delay 1:00 @18:20:53.76 Archive.seek :clear @18:21:11.25 RNAlater soak for 10:00 @18:31:11.27 Archive.seek :tVent @18:31:13.71 delay 1 second @18:31:14.73 Archive.seek :evac @18:31:30.24 delay 10 seconds @18:31:40.26 Sample preserved and evacuated @18:31:41.35 -> Cmd.stop @18:31:41.50 Carousel.seek 58 @18:31:41.68 Plunge.seek :locked @18:31:42.60 Archive.in :unlocking @18:31:42.72 Archive.seek :clear @18:31:42.83 Air.in :unlocking @18:31:42.92 Air.seek :clear @18:31:43.00 Lysis1.in :unlocking @18:31:43.13 Lysis1.seek :clear @18:31:46.84 Gate.power :motor,:OFF @18:31:46.86 Gate.power :core,:OFF @18:31:46.89 Gate.power :analytic1,:OFF @18:31:46.91 Gate.power :analytic2,:OFF @18:31:46.93 Gate.power :analytic3,:OFF @18:31:46.95 Gate.power :main,:OFF @18:31:46.97 Safely stopped and ready to power off ##-- file closed 2022-05-14T03:42:27.653Z ##-- file opened 2022-05-14T03:42:27.655Z @20:42:25.53 -> showStatus @20:42:27.55 -> Cmd.loadCartridge -6 @20:42:27.61 Gate.power :main,:ON,limit to 5000mA @20:42:27.62 Gate.power :analytic1,:ON,limit to 5000mA @20:42:27.65 Gate.power :analytic2,:ON,limit to 5000mA @20:42:27.68 Gate.power :analytic3,:ON,limit to 5000mA @20:42:27.84 Powering core bus @20:42:30.09 SPR Module 1, FW Rev. B, FPGA Rev. C @20:42:30.57 Archive.configure :default @20:42:30.70 Air.configure :default @20:42:30.80 Lysis1.configure :default @20:42:30.91 Lysis2.configure :default @20:42:31.04 Plunge.configure :default @20:42:31.16 SamplePump.configure :default @20:42:31.29 Toroid.configure :default @20:42:31.42 Carousel.configure :default @20:42:31.54 Pressure.configure :default @20:42:31.67 ExtraPump.configure :default @20:42:31.78 PinPort.configure :default @20:42:31.84 All elf controllers running firmware version 4.79 @20:42:31.87 Gate.power :motor,:ON,limit to 5000mA @20:42:32.38 Toroid.in :default @20:42:32.42 Plunge.in :default @20:42:32.46 Lysis1.in :default @20:42:32.50 Archive.in :default @20:42:32.56 Air.in :default @20:42:32.59 PinPort.in :default @20:42:32.62 Lysis2.in :default @20:42:32.84 Toroid.home.jog 0 @20:42:32.90 Lysis1.home.jog 0 @20:42:32.95 Lysis2.home.jog 0 @20:42:32.98 Archive.home.jog 0 @20:42:33.01 PinPort.home.jog 0 @20:42:33.04 Air.home.jog 0 @20:42:33.08 Plunge.home.jog 0 @20:42:33.76 Plunge.in :homing @20:42:33.79 PinPort.in :homing @20:42:33.85 Lysis2.in :homing @20:42:33.87 Air.in :homing @20:42:33.90 Archive.in :homing @20:42:33.94 Toroid.in :homing @20:42:34.00 Lysis1.in :homing @20:42:34.23 PinPort.jog -104 @20:42:34.25 Plunge.jog 108 @20:42:34.28 Air.jog 1382 @20:42:34.30 Archive.jog 1393 @20:42:34.34 Lysis2.jog 1394 @20:42:34.36 Lysis1.jog 1376 @20:42:34.39 Toroid.jog 643 @20:42:34.68 PinPort.setRawPosition! 0 @20:42:34.73 PinPort.seek :home @20:42:34.84 PinPort.in :default @20:42:34.85 Plunge.setRawPosition! 50 @20:42:34.93 Plunge.seek :home @20:42:35.22 Plunge.in :default @20:42:35.64 Archive.setRawPosition! 50 @20:42:35.71 Archive.seek :home @20:42:35.81 Lysis2.setRawPosition! 50 @20:42:35.82 Lysis1.setRawPosition! 50 @20:42:35.85 Air.setRawPosition! 50 @20:42:35.95 Lysis2.seek :home @20:42:36.01 Lysis1.seek :home @20:42:36.03 Air.seek :home @20:42:36.23 Archive.in :default @20:42:36.34 Lysis2.in :default @20:42:36.45 Air.in :default @20:42:36.47 Lysis1.in :default @20:42:36.76 Toroid.setRawPosition! 0 @20:42:36.82 Toroid.seek :home @20:42:36.91 Toroid.in :default @20:42:37.05 Toroid.seek :clear @20:42:38.66 Carousel.in :default @20:42:38.73 Carousel.home.jog 0 @20:42:39.21 Carousel.in :default @20:42:39.27 Carousel.seek 58 @20:42:39.42 Selecting Cartridge 55 @20:42:39.68 Carousel.seek 55 @20:42:40.57 Lysis1.in :fast @20:42:40.64 Lysis1.seek :locked @20:42:43.23 Plunge.seek :locked @20:42:43.37 Air.in :fast @20:42:43.43 Air.seek :locked @20:42:45.90 Powering cartridge bus @20:42:48.50 Gate.setIR 1750,5000,0,6 @20:42:48.62 Gate.setIR 0,5000,0,6 @20:42:48.68 Gate.power :cartridge,:OFF @20:42:49.21 Mounted archive Cartridge @20:43:07.14 -> Cmd.startFiltering @20:43:07.38 92.07 Preparing to filter cartridge 55 @20:43:07.65 Priming sample loop w/100ml, bypass w/10ml @20:43:07.67 SamplePump.setPosition! 0ml @20:43:07.72 Bypass.open @20:43:09.19 Intake.open @20:43:09.92 Sea 2.3m deep (18.1psia) @20:43:09.94 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @20:43:12.52 Vacuum tare is 54% of full scale @20:43:12.64 Pressure.in :default @20:43:12.70 Pressure.hold @20:43:12.87 SamplePump.in :prime @20:43:12.94 SamplePump.seek 10ml,59 seconds @20:43:21.55 Pressure.stop @20:43:21.60 SamplePump.setPosition! 0ml @20:43:21.65 Exhaust.open @20:43:23.11 Bypass.close @20:43:24.62 Pressure.in :default @20:43:24.68 Pressure.hold @20:43:24.80 Sea 2.3m deep (18.1psia) @20:43:24.93 SamplePump.in :prime @20:43:25.00 SamplePump.seek 100ml,5:16 @20:44:52.93 Pressure.stop @20:44:52.99 Bypass.open @20:44:53.66 Intake.close @20:44:54.37 Toroid.in :hold @20:44:54.43 Toroid.seek :crack @20:44:55.94 Toroid.seek :cartridge @20:44:57.03 Toroid.in :default @20:44:57.49 Toroid.seek :clear @20:44:59.44 Pressurizing cartridge to 26psi above 18.3psia @20:44:59.46 SamplePump.setPosition! 0ml @20:44:59.51 Intake.open @20:45:00.15 Bypass.close @20:45:00.84 Exhaust.close @20:45:01.68 Pressure.in :default @20:45:01.74 Pressure.hold @20:45:01.92 SamplePump.in :charge @20:45:01.99 SamplePump.seek 2.3ml,42 seconds @20:45:08.62 Pressure.stop @20:45:08.67 Intake.close @20:45:09.40 Pressurized cartridge with 0.209ml to 28.1psi @20:45:09.41 Isolated @41.9psia (23.5psi) @20:45:09.42 Verifying cartridge holds at least 0.65..0.85 of 41.9psia @20:45:09.45 Waiting up to 20 seconds for cartridge pressure to stabilize +/-1.50psi @20:45:14.09 Sampling 1000.0ml @20:45:14.10 SamplePump.setPosition! 0ml @20:45:14.16 Exhaust.open @20:45:14.90 Intake.open @20:45:15.71 Pressure.in :default @20:45:15.77 Pressure.hold @20:45:15.89 Sea 2.8m deep (18.8psia) @20:45:16.03 SamplePump.in :sample @20:45:16.10 SamplePump.seek 1000ml,1:23:48 @20:45:18.73 Cartridge 55 filtering 1/1000ml at 0.47ml/s with 18.8psi vacuum 3.5m deep (19.9psia) @20:46:18.74 Cartridge 55 filtering 31/1000ml at 0.50ml/s with 21.1psi vacuum @20:47:18.74 Cartridge 55 filtering 60/1000ml at 0.52ml/s with 20.2psi vacuum 4.8m deep (21.9psia) @20:48:18.74 Cartridge 55 filtering 90/1000ml at 0.51ml/s with 22.4psi vacuum 3.8m deep (20.3psia) @20:49:18.74 Cartridge 55 filtering 119/1000ml at 0.50ml/s with 20.6psi vacuum 1.6m deep (17.1psia) @20:50:18.74 Cartridge 55 filtering 149/1000ml at 0.47ml/s with 22.8psi vacuum 1.8m deep (17.4psia) @20:51:18.74 Cartridge 55 filtering 178/1000ml at 0.51ml/s with 26.7psi vacuum @20:52:18.74 Cartridge 55 filtering 207/1000ml at 0.46ml/s with 22.2psi vacuum 2.2m deep (17.9psia) @20:53:18.74 Cartridge 55 filtering 237/1000ml at 0.50ml/s with 20.7psi vacuum 1.7m deep (17.1psia) @20:54:18.74 Cartridge 55 filtering 266/1000ml at 0.50ml/s with 26.9psi vacuum @20:55:18.74 Cartridge 55 filtering 295/1000ml at 0.49ml/s with 26.3psi vacuum 2.3m deep (18.1psia) @20:56:18.74 Cartridge 55 filtering 325/1000ml at 0.47ml/s with 24.4psi vacuum @20:57:18.74 Cartridge 55 filtering 354/1000ml at 0.50ml/s with 20.9psi vacuum 3.0m deep (19.1psia) @20:58:18.74 Cartridge 55 filtering 383/1000ml at 0.49ml/s with 26.3psi vacuum 1.9m deep (17.4psia) @20:59:18.74 Cartridge 55 filtering 412/1000ml at 0.47ml/s with 23.8psi vacuum @21:00:18.74 Cartridge 55 filtering 442/1000ml at 0.47ml/s with 24.9psi vacuum @21:01:18.74 Cartridge 55 filtering 471/1000ml at 0.47ml/s with 24.1psi vacuum 1.7m deep (17.2psia) @21:02:18.74 Cartridge 55 filtering 500/1000ml at 0.48ml/s with 27.2psi vacuum 1.9m deep (17.5psia) @21:03:18.74 Cartridge 55 filtering 529/1000ml at 0.51ml/s with 24.4psi vacuum 3.3m deep (19.5psia) @21:04:18.74 Cartridge 55 filtering 558/1000ml at 0.50ml/s with 21.3psi vacuum 2.5m deep (18.3psia) @21:05:18.74 Cartridge 55 filtering 587/1000ml at 0.47ml/s with 23.8psi vacuum @21:06:18.74 Cartridge 55 filtering 617/1000ml at 0.47ml/s with 25.4psi vacuum @21:07:18.74 Cartridge 55 filtering 646/1000ml at 0.50ml/s with 25.1psi vacuum 2.3m deep (18.1psia) @21:08:18.74 Cartridge 55 filtering 675/1000ml at 0.50ml/s with 21.5psi vacuum @21:09:18.74 Cartridge 55 filtering 704/1000ml at 0.47ml/s with 25.0psi vacuum @21:10:18.74 Cartridge 55 filtering 733/1000ml at 0.50ml/s with 26.9psi vacuum @21:11:18.74 Cartridge 55 filtering 762/1000ml at 0.51ml/s with 21.8psi vacuum 2.7m deep (18.7psia) @21:12:18.74 Cartridge 55 filtering 791/1000ml at 0.47ml/s with 22.0psi vacuum 1.7m deep (17.2psia) @21:13:18.74 Cartridge 55 filtering 820/1000ml at 0.49ml/s with 26.5psi vacuum @21:14:18.75 Cartridge 55 filtering 849/1000ml at 0.50ml/s with 21.7psi vacuum 3.5m deep (19.9psia) @21:15:18.74 Cartridge 55 filtering 879/1000ml at 0.47ml/s with 23.8psi vacuum @21:16:18.73 Cartridge 55 filtering 908/1000ml at 0.48ml/s with 26.0psi vacuum 2.0m deep (17.7psia) @21:17:18.74 Cartridge 55 filtering 937/1000ml at 0.47ml/s with 22.0psi vacuum @21:18:18.73 Cartridge 55 filtering 966/1000ml at 0.48ml/s with 26.9psi vacuum @21:19:18.74 Cartridge 55 filtering 995/1000ml at 0.48ml/s with 19.9psi vacuum @21:19:29.39 Pressure.stop @21:19:29.51 Intake.close @21:19:29.55 Exhaust.close @21:19:29.71 Toroid.in :hold @21:19:29.77 Toroid.seek :bypass @21:19:31.39 Toroid.in :default @21:19:31.45 Toroid.seek :clear @21:19:33.06 Sampled 1000.0ml @21:19:34.43 -> Cmd.startProcessing @21:19:34.84 Plunge.seek :reagent @21:19:35.64 Sample loop closed. Ready to Deliver Reagents @21:19:35.66 Archive.seek :sealed @21:19:39.60 Archive.seek :evac @21:19:53.62 delay 1:00 @21:20:53.64 Archive.seek :clear @21:21:11.11 RNAlater soak for 10:00 @21:31:11.14 Archive.seek :tVent @21:31:13.58 delay 1 second @21:31:14.60 Archive.seek :evac @21:31:30.10 delay 10 seconds @21:31:40.13 Sample preserved and evacuated @21:31:41.26 -> Cmd.stop @21:31:41.40 Carousel.seek 55 @21:31:41.58 Plunge.seek :locked @21:31:42.51 Archive.in :unlocking @21:31:42.63 Archive.seek :clear @21:31:42.72 Air.in :unlocking @21:31:42.82 Air.seek :clear @21:31:42.93 Lysis1.in :unlocking @21:31:43.03 Lysis1.seek :clear @21:31:46.76 Gate.power :motor,:OFF @21:31:46.77 Gate.power :core,:OFF @21:31:46.80 Gate.power :analytic1,:OFF @21:31:46.82 Gate.power :analytic2,:OFF @21:31:46.84 Gate.power :analytic3,:OFF @21:31:46.87 Gate.power :main,:OFF @21:31:46.88 Safely stopped and ready to power off ##-- file closed 2022-05-14T06:06:00.121Z ##-- file opened 2022-05-14T06:06:00.124Z @23:05:58.00 -> showStatus @23:06:00.03 -> Cmd.loadCartridge -10 @23:06:00.09 Gate.power :main,:ON,limit to 5000mA @23:06:00.11 Gate.power :analytic1,:ON,limit to 5000mA @23:06:00.13 Gate.power :analytic2,:ON,limit to 5000mA @23:06:00.16 Gate.power :analytic3,:ON,limit to 5000mA @23:06:00.30 Powering core bus @23:06:02.57 SPR Module 1, FW Rev. B, FPGA Rev. C @23:06:03.04 Archive.configure :default @23:06:03.17 Air.configure :default @23:06:03.28 Lysis1.configure :default @23:06:03.40 Lysis2.configure :default @23:06:03.53 Plunge.configure :default @23:06:03.66 SamplePump.configure :default @23:06:03.79 Toroid.configure :default @23:06:03.92 Carousel.configure :default @23:06:04.04 Pressure.configure :default @23:06:04.17 ExtraPump.configure :default @23:06:04.28 PinPort.configure :default @23:06:04.35 All elf controllers running firmware version 4.79 @23:06:04.38 Gate.power :motor,:ON,limit to 5000mA @23:06:04.68 Archive.in :default @23:06:04.87 Archive.home.jog 0 @23:06:05.07 Toroid.in :default @23:06:05.11 Plunge.in :default @23:06:05.15 Lysis1.in :default @23:06:05.22 Air.in :default @23:06:05.27 PinPort.in :default @23:06:05.31 Lysis2.in :default @23:06:05.46 Toroid.home.jog 0 @23:06:05.54 Plunge.home.jog 0 @23:06:05.60 PinPort.home.jog 0 @23:06:05.63 Lysis1.home.jog 0 @23:06:05.66 Air.home.jog 0 @23:06:05.71 Lysis2.home.jog 0 @23:06:06.03 Archive.in :homing @23:06:06.17 Toroid.in :homing @23:06:06.29 Archive.jog 1395 @23:06:06.37 Plunge.in :homing @23:06:06.41 PinPort.in :homing @23:06:06.53 Toroid.jog 646 @23:06:06.59 PinPort.jog -105 @23:06:06.61 Plunge.jog 1561 @23:06:06.82 Lysis2.in :homing @23:06:06.84 Lysis1.in :homing @23:06:06.90 Air.in :homing @23:06:06.99 Lysis1.jog 1377 @23:06:07.05 Lysis2.jog 1397 @23:06:07.07 Air.jog 1383 @23:06:07.24 PinPort.setRawPosition! 0 @23:06:07.29 PinPort.seek :home @23:06:07.38 PinPort.in :default @23:06:07.61 Archive.setRawPosition! 50 @23:06:07.66 Archive.seek :home @23:06:07.90 Plunge.setRawPosition! 50 @23:06:07.96 Plunge.seek :home @23:06:08.04 Archive.in :default @23:06:08.27 Plunge.in :default @23:06:08.28 Lysis1.setRawPosition! 50 @23:06:08.38 Lysis1.seek :home @23:06:08.49 Lysis2.setRawPosition! 50 @23:06:08.50 Air.setRawPosition! 50 @23:06:08.60 Lysis2.seek :home @23:06:08.61 Air.seek :home @23:06:08.77 Lysis1.in :default @23:06:08.86 Toroid.setRawPosition! 0 @23:06:08.92 Toroid.seek :home @23:06:09.04 Lysis2.in :default @23:06:09.06 Air.in :default @23:06:09.10 Toroid.in :default @23:06:09.55 Toroid.seek :clear @23:06:11.16 Carousel.in :default @23:06:11.23 Carousel.home.jog 0 @23:06:11.71 Carousel.in :default @23:06:11.77 Carousel.seek 55 @23:06:11.93 Selecting Cartridge 56 @23:06:12.19 Carousel.seek 56 @23:06:12.68 Lysis1.in :fast @23:06:12.74 Lysis1.seek :locked @23:06:15.33 Plunge.seek :locked @23:06:15.47 Air.in :fast @23:06:15.53 Air.seek :locked @23:06:17.99 Powering cartridge bus @23:06:20.59 Gate.setIR 1750,5000,0,6 @23:06:20.71 Gate.setIR 0,5000,0,6 @23:06:20.79 PuckHeater.configure :default @23:06:20.85 Gate.power :heat,:ON,limit to 5000mA @23:06:21.53 Mounted lysis Cartridge board#Q05062 @23:06:21.56 Using default puck heat loss curve for HeatingAccelInCarousel @23:06:40.43 -> Cmd.startFiltering 92.07@23:06:40.66 Preparing to filter cartridge 56 @23:06:40.94 Priming sample loop w/100ml, bypass w/10ml @23:06:40.96 SamplePump.setPosition! 0ml @23:06:41.00 Bypass.open @23:06:42.46 Intake.open @23:06:43.18 Sea 2.1m deep (17.9psia) @23:06:43.20 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @23:06:45.77 Vacuum tare is 54% of full scale @23:06:45.91 Pressure.in :default @23:06:45.97 Pressure.hold @23:06:46.15 SamplePump.in :prime @23:06:46.21 SamplePump.seek 10ml,59 seconds @23:06:54.82 Pressure.stop @23:06:54.87 SamplePump.setPosition! 0ml @23:06:54.93 Exhaust.open @23:06:56.37 Bypass.close @23:06:57.88 Pressure.in :default @23:06:57.94 Pressure.hold @23:06:58.05 Sea 2.1m deep (17.8psia) @23:06:58.19 SamplePump.in :prime @23:06:58.26 SamplePump.seek 100ml,5:16 @23:08:26.60 Pressure.stop @23:08:26.66 Bypass.open @23:08:27.36 Intake.close @23:08:28.11 Toroid.in :hold @23:08:28.61 Toroid.seek :crack @23:08:30.12 Toroid.seek :cartridge @23:08:31.21 Toroid.in :default @23:08:31.27 Toroid.seek :clear @23:08:33.24 Pressurizing cartridge to 26psi above 17.8psia @23:08:33.26 SamplePump.setPosition! 0ml @23:08:33.31 Intake.open @23:08:33.96 Bypass.close @23:08:34.68 Exhaust.close @23:08:35.48 Pressure.in :default @23:08:35.55 Pressure.hold @23:08:35.73 SamplePump.in :charge @23:08:35.80 SamplePump.seek 2.3ml,42 seconds @23:08:49.58 Pressure.stop @23:08:49.64 Intake.close @23:08:50.34 Pressurized cartridge with 0.916ml to 26.4psi @23:08:50.35 Isolated @36.4psia (18.5psi) @23:08:50.37 Verifying cartridge holds at least 0.65..0.85 of 36.4psia @23:08:50.40 Waiting up to 20 seconds for cartridge pressure to stabilize +/-1.50psi @23:08:54.98 Cartridge pressure fell 4% to 34.8psia @23:08:55.06 Sampling 1000.0ml @23:08:55.08 SamplePump.setPosition! 0ml @23:08:55.14 Exhaust.open @23:08:55.88 Intake.open @23:08:56.68 Pressure.in :default @23:08:56.75 Pressure.hold @23:08:56.87 Sea 3.0m deep (19.2psia) @23:08:57.01 SamplePump.in :sample @23:08:57.09 SamplePump.seek 1000ml,1:23:48 @23:08:59.72 Cartridge 56 filtering 1/1000ml at 0.45ml/s with 26.2psi vacuum 3.9m deep (20.5psia) @23:09:59.71 Cartridge 56 filtering 29/1000ml at 0.49ml/s with 23.5psi vacuum 1.9m deep (17.4psia) @23:10:59.72 Cartridge 56 filtering 58/1000ml at 0.47ml/s with 22.9psi vacuum @23:11:59.71 Cartridge 56 filtering 86/1000ml at 0.49ml/s with 22.6psi vacuum 2.7m deep (18.6psia) @23:12:59.72 Cartridge 56 filtering 115/1000ml at 0.46ml/s with 23.1psi vacuum @23:13:59.71 Cartridge 56 filtering 143/1000ml at 0.47ml/s with 21.0psi vacuum 1.7m deep (17.2psia) @23:14:59.72 Cartridge 56 filtering 171/1000ml at 0.45ml/s with 22.9psi vacuum @23:15:59.72 Cartridge 56 filtering 199/1000ml at 0.48ml/s with 24.8psi vacuum @23:16:59.72 Cartridge 56 filtering 227/1000ml at 0.47ml/s with 26.4psi vacuum @23:17:59.72 Cartridge 56 filtering 255/1000ml at 0.47ml/s with 24.7psi vacuum 1.7m deep (17.2psia) @23:18:59.72 Cartridge 56 filtering 283/1000ml at 0.47ml/s with 20.9psi vacuum @23:19:59.73 Cartridge 56 filtering 310/1000ml at 0.47ml/s with 25.8psi vacuum @23:20:59.72 Cartridge 56 filtering 338/1000ml at 0.45ml/s with 25.3psi vacuum @23:21:59.71 Cartridge 56 filtering 366/1000ml at 0.44ml/s with 23.6psi vacuum @23:22:59.72 Cartridge 56 filtering 393/1000ml at 0.44ml/s with 22.6psi vacuum @23:23:59.71 Cartridge 56 filtering 421/1000ml at 0.45ml/s with 25.4psi vacuum @23:24:59.72 Cartridge 56 filtering 448/1000ml at 0.46ml/s with 25.2psi vacuum @23:25:59.72 Cartridge 56 filtering 476/1000ml at 0.46ml/s with 21.7psi vacuum @23:26:59.72 Cartridge 56 filtering 503/1000ml at 0.45ml/s with 27.7psi vacuum @23:27:59.71 Cartridge 56 filtering 531/1000ml at 0.47ml/s with 22.2psi vacuum @23:28:59.72 Cartridge 56 filtering 558/1000ml at 0.46ml/s with 25.9psi vacuum @23:29:59.72 Cartridge 56 filtering 585/1000ml at 0.44ml/s with 24.5psi vacuum @23:30:59.72 Cartridge 56 filtering 613/1000ml at 0.44ml/s with 23.6psi vacuum @23:31:59.72 Cartridge 56 filtering 640/1000ml at 0.45ml/s with 20.6psi vacuum @23:32:59.72 Cartridge 56 filtering 667/1000ml at 0.45ml/s with 20.5psi vacuum @23:33:59.72 Cartridge 56 filtering 694/1000ml at 0.45ml/s with 21.0psi vacuum @23:34:59.72 Cartridge 56 filtering 721/1000ml at 0.44ml/s with 22.4psi vacuum @23:35:59.72 Cartridge 56 filtering 749/1000ml at 0.46ml/s with 25.6psi vacuum @23:36:59.72 Cartridge 56 filtering 776/1000ml at 0.44ml/s with 23.9psi vacuum @23:37:59.72 Cartridge 56 filtering 803/1000ml at 0.47ml/s with 23.1psi vacuum 1.9m deep (17.5psia) @23:38:59.72 Cartridge 56 filtering 830/1000ml at 0.44ml/s with 23.1psi vacuum @23:39:59.72 Cartridge 56 filtering 857/1000ml at 0.46ml/s with 26.1psi vacuum @23:40:59.72 Cartridge 56 filtering 884/1000ml at 0.44ml/s with 23.0psi vacuum @23:41:59.72 Cartridge 56 filtering 911/1000ml at 0.47ml/s with 24.2psi vacuum @23:42:59.72 Cartridge 56 filtering 938/1000ml at 0.46ml/s with 25.2psi vacuum 1.6m deep (17.1psia) @23:43:59.71 Cartridge 56 filtering 965/1000ml at 0.44ml/s with 24.3psi vacuum @23:44:59.72 Cartridge 56 filtering 992/1000ml at 0.46ml/s with 26.2psi vacuum @23:45:17.06 Pressure.stop @23:45:17.18 Intake.close @23:45:17.22 Exhaust.close @23:45:17.40 Toroid.in :hold @23:45:17.47 Toroid.seek :bypass @23:45:19.08 Toroid.in :default @23:45:19.15 Toroid.seek :clear @23:45:20.76 Sampled 1000.0ml @23:45:22.32 -> Cmd.startProcessing @23:45:23.75 SPR.command \"read_sequences\" @23:45:24.17 SPR.command \"stats_on\" @23:45:24.27 SPR.command \"start 0 1\" @23:45:25.01 SPR.start /var/log/esp/spr22may1323h.spr.bz2 @23:45:27.02 Handoff.select :waste @23:45:33.69 Syringe tare is 18% of full scale @23:45:33.72 PinPort.in :locking @23:45:33.79 PinPort.seek :locked @23:45:34.29 Archive.in :fast @23:45:34.33 Lysis2.in :fast @23:45:34.39 Lysis1.seek 1350uL @23:45:34.51 Archive.seek :full @23:45:34.59 Lysis2.seek :full @23:45:36.54 Plunge.seek :reagent @23:45:37.42 Evacuating puck with filter bubble point of 50psi @23:45:37.44 PinPort.seek :locked @23:45:37.53 Handoff.select :waste @23:45:44.11 Air syringe pumping up to 1 stroke to reach 8psi @23:45:44.12 Air stroke #1 of 1 @23:45:44.21 Air.in :pressurize @23:45:44.27 Air.seek :pressurized @23:45:55.85 2.2psi after pressurize @23:45:55.89 Air.in :compress @23:45:55.98 Air.seek :evac @23:46:00.07 0.4psi after compress @23:46:12.64 -0.1psi after compress (stable) @23:46:12.66 Air.in :default @23:46:12.72 Air.hold @23:46:12.92 at -0.1psi Opened to waste @23:46:12.95 Handoff.select :blocked @23:46:13.09 Archive syringe pumping up to 8 strokes to reach 50psi @23:46:13.10 Archive stroke #1 of 8 @23:46:13.18 Archive.in :pressurize @23:46:13.25 Archive.seek :pressurized @23:46:26.10 3.4psi after pressurize @23:46:26.12 Archive.in :compress @23:46:26.21 Archive.seek :empty @23:46:40.89 38.1psi after compress @23:46:53.46 38.9psi after compress (stable) @23:46:53.48 Archive.in :gulp @23:46:53.56 Archive.seek :topVent @23:47:00.73 38.9psi after gulp @23:47:13.31 38.6psi after gulp (stable) @23:47:13.32 Archive stroke #2 of 8 @23:47:13.43 Archive.in :pressurize @23:47:13.52 Archive.seek :pressurized @23:47:26.38 38.3psi after pressurize @23:47:26.40 Archive.in :compress @23:47:26.48 Archive.seek :empty @23:47:37.06 Reached 50.2 of 50.0psi after pumping 3372uL (1.95 strokes) @23:47:37.09 Archive.in :default @23:47:37.18 Archive.hold @23:47:37.24 Handoff.select :waste @23:47:44.43 delay 1:00 @23:48:44.45 Handoff.select :blocked @23:49:20.63 Handoff.select :waste @23:49:20.75 6.3psi at evacEnd @23:49:20.77 Handoff.select :blocked @23:49:20.90 Archive.in :fast @23:49:20.96 Archive.seek :topVent @23:49:45.83 Stable @4.6psi after Handoff blocked @23:49:45.85 Archive syringe pumping up to 8 strokes to reach 35psi @23:49:45.87 Archive stroke #1 of 8 @23:49:45.97 Archive.in :pressurize @23:49:46.03 Archive.seek :pressurized @23:49:58.88 5.8psi after pressurize @23:49:58.91 Archive.in :compress @23:49:59.00 Archive.seek :empty @23:50:13.67 9.6psi after compress @23:50:51.74 20.9psi after compress (stable) @23:50:51.76 Archive.in :gulp @23:50:51.83 Archive.seek :topVent @23:50:58.97 21.8psi after gulp @23:51:11.55 22.5psi after gulp (stable) @23:51:11.56 Archive stroke #2 of 8 @23:51:11.66 Archive.in :pressurize @23:51:11.72 Archive.seek :pressurized @23:51:24.58 23.1psi after pressurize @23:51:24.60 Archive.in :compress @23:51:24.67 Archive.seek :empty @23:51:39.35 26.1psi after compress @23:52:04.23 Reached 34.6 of 34.6psi after pumping 3460uL (2.00 strokes) @23:52:04.25 Archive.in :default @23:52:04.31 Archive.hold @23:52:04.39 Handoff.select :waste @23:52:11.56 delay 1:00 @23:53:11.57 Handoff.select :blocked @23:53:34.25 Handoff.select :waste @23:53:34.37 2.5psi at evacEnd @23:53:34.38 Air.seek :fullVent @23:53:35.81 Archive.in :fast @23:53:35.87 Archive.seek :topVent @23:53:42.97 Seawater evacuated, Presure above/below filter released. Lysis begins @23:53:43.05 Lysis1.in :slow @23:53:43.13 Lysis1.seek 1050uL @23:54:13.16 delay 5 seconds @23:54:18.17 Handoff.select :blocked @23:54:18.34 Lysis1.seek 450uL @23:55:18.28 delay 3 seconds @23:55:21.35 Air.in mix with 1.40048 parts Lysis1 @23:55:21.80 Air.seek :evac @23:55:21.84 Lysis1.seek 300uL @23:55:36.95 Lysis1.seek :empty @23:56:07.03 Lysis buffer delivered @20.0psi @23:56:07.05 Polling Can every 2:00 @23:56:07.60 PuckHeater.configure :default #ambient 21.9C @23:56:07.65 PuckHeater.seek 79.7C @23:57:00.21 PuckHeater.hold 2:00,79.7C @23:59:00.22 Polling Can every 2:00 @23:59:00.75 PuckHeater.configure :default #ambient 21.9C @23:59:00.80 PuckHeater.hold 30 seconds,78.7C @23:59:30.98 Polling Can every 2:00 @23:59:31.52 PuckHeater.configure :default #ambient 21.9C @23:59:31.57 PuckHeater.hold 30 seconds,78.2C @00:00:01.75PDT14-May-22 Polling Can every 2:00 @00:00:02.29 PuckHeater.hold 10:00,77.7C @00:10:01.65 Lysis complete. Syringe pressure @23.7psi @00:10:01.66 Handoff.select :blocked @00:10:01.71 Archive syringe pumping up to 5 strokes to reach 40psi @00:10:01.72 Archive stroke #1 of 5 @00:10:01.82 Archive.in :pressurize @00:10:01.88 Archive.seek :pressurized @00:10:14.73 23.4psi after pressurize @00:10:14.74 Archive.in :compress @00:10:14.82 Archive.seek :empty @00:10:21.73 Reached 40.6 of 40.0psi after pumping 1563uL (0.90 strokes) @00:10:21.75 Archive.in :default @00:10:21.82 Archive.hold @00:10:21.88 delay 2 seconds @00:10:23.92 Archive.in :fast @00:10:23.98 Archive.seek :full @00:10:30.57 Lysis1.seek 138uL @00:10:44.43 delay 1 second @00:10:45.46 Archive.seek :full @00:10:45.51 Lysis1.seek :empty @00:10:59.53 Initial air pressure @44.0psi @00:10:59.60 Lysis1.in :extract @00:10:59.68 Lysis1.seek 600uL,nil @00:11:01.94 Archive syringe pumping up to 6 strokes to reach 25psi @00:11:01.95 Archive stroke #1 of 6 @00:11:02.04 Archive.in :pressurize @00:11:02.11 Archive.seek :pressurized @00:11:14.99 15.8psi after pressurize @00:11:15.00 Archive.in :compress @00:11:15.08 Archive.seek :empty @00:11:21.40 Syringe::LysatePlungerStuck in PROCESSING -- at < 266uL during Lysis Syringe #1 (LyS1) move @00:11:21.43 Lysis1.in :default @00:11:21.52 Lysis1.seek 231uL @00:11:22.11 Reached 27.8 of 25.0psi after pumping 1565uL (0.90 strokes) @00:11:22.13 Archive.in :default @00:11:22.20 Archive.hold @00:11:23.36 Lysis1.in :extract @00:11:23.48 Lysis1.seek 600uL,nil @00:11:27.04 Archive syringe pumping up to 6 strokes to reach 25psi @00:11:27.05 Archive stroke #1 of 6 @00:11:27.14 Archive.in :compress @00:11:27.25 Archive.seek :empty @00:11:31.02 Archive.in :default @00:11:31.55 Archive.hold @00:11:31.71 Initial 600uL lysate @22.1psi @00:11:31.72 Handoff.select :blocked @00:11:31.82 Initial air pressure @22.5psi @00:11:31.89 Lysis1.seek 825uL,nil @00:11:33.70 Archive syringe pumping up to 6 strokes to reach 17psi @00:11:33.71 Archive stroke #1 of 6 @00:11:33.89 Archive.in :compress @00:11:33.96 Archive.seek :empty @00:11:37.37 Archive.in :default @00:11:37.42 Archive.hold @00:11:37.66 Recovered 825uL lysate @17.3psi @00:11:37.68 Air.in :halfSpeed @00:11:37.75 Air.seek :fullVent @00:11:39.96 Puck Top Vented, bottom @21.4psi @00:11:39.97 Handoff.select :waste @00:11:40.10 delay 5 seconds @00:11:45.19 Handoff open to waste, bottom @0.1psi @00:11:45.21 Air.in :default @00:11:45.29 Air.seek :evac @00:11:46.70 Lysis1.in :DAmix @00:11:46.81 Lysis2.in :DAmix @00:11:47.26 Lysis1.seek 575uL @00:11:47.31 Lysis2.seek 1480uL @00:12:22.39 delay 5 seconds @00:12:27.40 Handoff.select SPR @00:12:27.53 SPR.command \"start 2 14\" @00:12:28.17 SPR stabilized @00:12:28.31 delay 10 seconds @00:12:38.33 SPR.command \"start 1 0\" @00:12:41.54 Waiting up to 4:00 for SPR to enter state 1 @00:14:43.94 SPR.command \"hold_on\" @00:14:45.32 SPR Dilution 1 of 1 -- Experiment 1 with 300.0uL L1 + 300.0uL L2 @00:14:45.80 Lysis1.seek 275uL @00:14:45.84 Lysis2.seek 1180uL @00:15:27.87 delay 15 seconds @00:15:42.89 SPR.command \"hold_off\" @00:15:45.97 Waiting up to 38:00 for SPR to enter state 7 @00:36:35.84 SPRsummary:-20.828,24.6773,29.3467,33.1507 after 3219s @00:43:13.06 SPR analysis completed @00:43:19.00 Ended log spr22may1323h.spr.bz2 @00:43:19.02 SPR.command \"stats_off\" @00:43:20.53 -> Cmd.stop @00:43:20.63 Handoff.select :close @00:43:20.76 Gate.power :heat,:OFF @00:43:20.78 Gate.power :cartridge,:OFF @00:43:20.86 Carousel.seek 56 @00:43:21.05 Plunge.seek :locked @00:43:21.90 PinPort.in :unlocking @00:43:21.97 PinPort.seek :clear @00:43:22.52 Archive.in :unlocking @00:43:22.65 Archive.seek :clear @00:43:22.70 Air.in :unlocking @00:43:22.85 Air.seek :clear @00:43:22.89 Lysis1.in :unlocking @00:43:23.02 Lysis1.seek :clear @00:43:23.15 Lysis2.in :unlocking @00:43:23.22 Lysis2.seek :clear @00:43:26.77 Gate.power :motor,:OFF @00:43:26.79 Gate.power :core,:OFF @00:43:26.81 Gate.power :analytic1,:OFF @00:43:26.84 Gate.power :analytic2,:OFF @00:43:26.86 Gate.power :analytic3,:OFF @00:43:26.88 Gate.power :main,:OFF @00:43:26.91 Safely stopped and ready to power off ##-- file closed 2022-05-14T21:31:35.025Z ##-- file opened 2022-05-14T21:31:35.027Z @14:31:32.97 -> showStatus @14:31:34.99 -> Cmd.loadCartridge -10 @14:31:35.05 Gate.power :main,:ON,limit to 5000mA @14:31:35.07 Gate.power :analytic1,:ON,limit to 5000mA @14:31:35.09 Gate.power :analytic2,:ON,limit to 5000mA @14:31:35.11 Gate.power :analytic3,:ON,limit to 5000mA @14:31:35.26 Powering core bus @14:31:37.52 SPR Module 1, FW Rev. B, FPGA Rev. C @14:31:37.99 Archive.configure :default @14:31:38.11 Air.configure :default @14:31:38.22 Lysis1.configure :default @14:31:38.32 Lysis2.configure :default @14:31:38.45 Plunge.configure :default @14:31:38.57 SamplePump.configure :default @14:31:38.70 Toroid.configure :default @14:31:38.83 Carousel.configure :default @14:31:38.96 Pressure.configure :default @14:31:39.09 ExtraPump.configure :default @14:31:39.19 PinPort.configure :default @14:31:39.25 All elf controllers running firmware version 4.79 @14:31:39.29 Gate.power :motor,:ON,limit to 5000mA @14:31:39.56 Archive.in :default @14:31:39.78 Archive.home.jog 0 @14:31:39.98 Toroid.in :default @14:31:40.01 Plunge.in :default @14:31:40.05 Lysis1.in :default @14:31:40.09 PinPort.in :default @14:31:40.16 Lysis2.in :default @14:31:40.22 Air.in :default @14:31:40.34 Toroid.home.jog 0 @14:31:40.42 Plunge.home.jog 0 @14:31:40.45 PinPort.home.jog 0 @14:31:40.48 Lysis2.home.jog 0 @14:31:40.51 Lysis1.home.jog 0 @14:31:40.55 Air.home.jog 0 @14:31:40.90 Archive.in :homing @14:31:41.07 Toroid.in :homing @14:31:41.11 Plunge.in :homing @14:31:41.16 Archive.jog 1393 @14:31:41.21 PinPort.in :homing @14:31:41.39 Toroid.jog 646 @14:31:41.44 Plunge.jog 110 @14:31:41.47 PinPort.jog -106 @14:31:41.67 Air.in :homing @14:31:41.69 Lysis2.in :homing @14:31:41.72 Lysis1.in :homing @14:31:41.85 Lysis2.jog 1396 @14:31:41.93 Lysis1.jog 1377 @14:31:41.95 Air.jog 1382 @14:31:42.11 Plunge.setRawPosition! 50 @14:31:42.13 PinPort.setRawPosition! 0 @14:31:42.21 Plunge.seek :home @14:31:42.24 PinPort.seek :home @14:31:42.37 PinPort.in :default @14:31:42.49 Archive.setRawPosition! 50 @14:31:42.55 Archive.seek :home @14:31:42.64 Plunge.in :default @14:31:42.83 Archive.in :default @14:31:43.05 Lysis2.setRawPosition! 50 @14:31:43.10 Lysis2.seek :home @14:31:43.21 Lysis1.setRawPosition! 50 @14:31:43.23 Air.setRawPosition! 50 @14:31:43.31 Lysis1.seek :home @14:31:43.35 Air.seek :home @14:31:43.48 Lysis2.in :default @14:31:43.64 Lysis1.in :default @14:31:43.75 Toroid.setRawPosition! 0 @14:31:43.77 Air.in :default @14:31:43.83 Toroid.seek :home @14:31:43.97 Toroid.in :default @14:31:44.25 Toroid.seek :clear @14:31:45.86 Carousel.in :default @14:31:45.92 Carousel.home.jog 0 @14:31:46.40 Carousel.in :default @14:31:46.47 Carousel.seek 56 @14:31:46.60 Selecting Cartridge 50 @14:31:46.86 Carousel.seek 50 @14:31:48.37 Lysis1.in :fast @14:31:48.44 Lysis1.seek :locked @14:31:51.04 Plunge.seek :locked @14:31:51.16 Air.in :fast @14:31:51.22 Air.seek :locked @14:31:53.70 Powering cartridge bus @14:31:56.30 Gate.setIR 1750,5000,0,6 @14:31:56.42 Gate.setIR 0,5000,0,6 @14:31:56.48 PuckHeater.configure :default @14:31:56.54 Gate.power :heat,:ON,limit to 5000mA @14:31:57.21 Mounted lysis Cartridge board#Q05058 @14:31:57.25 Using default puck heat loss curve for HeatingAccelInCarousel @14:32:15.39 -> Cmd.startFiltering @14:32:15.63 Preparing to filter cartridge 50 @14:32:15.89 Priming sample loop w/100ml, bypass w/10ml @14:32:15.90 SamplePump.setPosition! 0ml @14:32:15.95 Bypass.open @14:32:17.39 Intake.open @14:32:18.14 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @14:32:20.70 Vacuum tare is 54% of full scale @14:32:20.83 Pressure.in :default @14:32:20.89 Pressure.hold @14:32:21.07 SamplePump.in :prime @14:32:21.13 SamplePump.seek 10ml,59 seconds @14:32:29.73 Pressure.stop @14:32:29.79 SamplePump.setPosition! 0ml @14:32:29.83 Exhaust.open @14:32:31.30 Bypass.close @14:32:32.81 Pressure.in :default @14:32:32.87 Pressure.hold @14:32:33.09 SamplePump.in :prime @14:32:33.16 SamplePump.seek 100ml,5:16 @14:33:57.95 Pressure.stop @14:33:58.01 Bypass.open @14:33:58.66 Intake.close @14:33:59.79 Toroid.in :hold @14:33:59.85 Toroid.seek :crack @14:34:01.36 Toroid.seek :cartridge @14:34:02.45 Toroid.in :default @14:34:02.52 Toroid.seek :clear @14:34:04.47 Pressurizing cartridge to 26psi above 16.3psia @14:34:04.49 SamplePump.setPosition! 0ml @14:34:04.54 Intake.open @14:34:05.21 Bypass.close @14:34:05.90 Exhaust.close @14:34:06.73 Pressure.in :default @14:34:06.79 Pressure.hold @14:34:06.97 SamplePump.in :charge @14:34:07.03 SamplePump.seek 2.3ml,42 seconds @14:34:20.94 Pressure.stop @14:34:20.99 Intake.close @14:34:21.69 Pressurized cartridge with 0.934ml to 26.5psi Isolated @40.9psia (24.6psi) @14:34:21.71 Verifying cartridge holds at least 0.65..0.85 of 40.9psia @14:34:21.74 Waiting up to 20 seconds for cartridge pressure to stabilize +/-1.50psi @14:34:26.32 Cartridge pressure fell 1% to 40.6psia @14:34:26.40 Sampling 1000.0ml @14:34:26.41 SamplePump.setPosition! 0ml @14:34:26.47 Exhaust.open @14:34:27.21 Intake.open @14:34:27.98 Pressure.in :default @14:34:28.04 Pressure.hold @14:34:28.15 Sea 1.8m deep (17.3psia) @14:34:28.29 SamplePump.in :sample @14:34:28.37 SamplePump.seek 1000ml,1:23:48 @14:34:31.01 Cartridge 50 filtering 1/1000ml at 0.50ml/s with 23.7psi vacuum @14:35:31.01 Cartridge 50 filtering 32/1000ml at 0.53ml/s with 21.8psi vacuum 2.0m deep (17.7psia) @14:36:31.01 Cartridge 50 filtering 62/1000ml at 0.53ml/s with 20.8psi vacuum 2.7m deep (18.6psia) @14:37:31.01 Cartridge 50 filtering 93/1000ml at 0.49ml/s with 28.6psi vacuum @14:38:31.01 Cartridge 50 filtering 123/1000ml at 0.50ml/s with 23.6psi vacuum @14:39:31.01 Cartridge 50 filtering 154/1000ml at 0.52ml/s with 18.3psi vacuum 2.7m deep (18.7psia) @14:40:31.01 Cartridge 50 filtering 184/1000ml at 0.49ml/s with 22.5psi vacuum 2.5m deep (18.4psia) @14:41:31.01 Cartridge 50 filtering 215/1000ml at 0.51ml/s with 26.7psi vacuum @14:42:31.01 Cartridge 50 filtering 245/1000ml at 0.48ml/s with 23.1psi vacuum 2.4m deep (18.3psia) @14:43:31.01 Cartridge 50 filtering 275/1000ml at 0.48ml/s with 26.4psi vacuum @14:44:31.01 Cartridge 50 filtering 305/1000ml at 0.52ml/s with 20.2psi vacuum 2.9m deep (18.9psia) @14:45:31.01 Cartridge 50 filtering 335/1000ml at 0.49ml/s with 13.9psi vacuum 3.9m deep (20.4psia) @14:46:31.01 Cartridge 50 filtering 366/1000ml at 0.54ml/s with 24.3psi vacuum @14:47:31.01 Cartridge 50 filtering 396/1000ml at 0.53ml/s with 26.9psi vacuum @14:48:31.01 Cartridge 50 filtering 426/1000ml at 0.51ml/s with 30.2psi vacuum @14:49:31.01 Cartridge 50 filtering 456/1000ml at 0.50ml/s with 25.5psi vacuum @14:50:31.01 Cartridge 50 filtering 487/1000ml at 0.47ml/s with 24.0psi vacuum @14:51:31.01 Cartridge 50 filtering 517/1000ml at 0.52ml/s with 18.9psi vacuum @14:52:31.01 Cartridge 50 filtering 547/1000ml at 0.55ml/s with 26.2psi vacuum 1.7m deep (17.3psia) @14:53:31.01 Cartridge 50 filtering 578/1000ml at 0.47ml/s with 28.5psi vacuum @14:54:31.01 Cartridge 50 filtering 608/1000ml at 0.53ml/s with 28.8psi vacuum @14:55:31.01 Cartridge 50 filtering 638/1000ml at 0.55ml/s with 23.8psi vacuum 2.2m deep (17.9psia) @14:56:31.01 Cartridge 50 filtering 668/1000ml at 0.52ml/s with 27.3psi vacuum 2.6m deep (18.5psia) @14:57:31.01 Cartridge 50 filtering 698/1000ml at 0.51ml/s with 31.0psi vacuum @14:58:31.01 Cartridge 50 filtering 728/1000ml at 0.52ml/s with 27.1psi vacuum 2.8m deep (18.9psia) @14:59:31.01 Cartridge 50 filtering 759/1000ml at 0.54ml/s with 25.0psi vacuum @15:00:31.01 Cartridge 50 filtering 789/1000ml at 0.49ml/s with 12.7psi vacuum 4.2m deep (20.9psia) @15:01:31.01 Cartridge 50 filtering 819/1000ml at 0.47ml/s with 22.1psi vacuum @15:02:31.01 Cartridge 50 filtering 849/1000ml at 0.47ml/s with 22.5psi vacuum @15:03:31.01 Cartridge 50 filtering 879/1000ml at 0.54ml/s with 20.2psi vacuum @15:04:31.01 Cartridge 50 filtering 910/1000ml at 0.55ml/s with 23.9psi vacuum @15:05:31.01 Cartridge 50 filtering 940/1000ml at 0.55ml/s with 24.5psi vacuum 2.5m deep (18.4psia) @15:06:31.01 Cartridge 50 filtering 970/1000ml at 0.54ml/s with 22.9psi vacuum @15:07:30.81 Pressure.stop @15:07:30.93 Intake.close @15:07:30.97 Exhaust.close @15:07:31.14 Toroid.in :hold @15:07:31.21 Toroid.seek :bypass @15:07:32.82 Toroid.in :default @15:07:32.88 Toroid.seek :clear @15:07:34.49 Sampled 1000.0ml @15:07:36.01 -> Cmd.startProcessing @15:07:37.44 SPR.command \"read_sequences\" @15:07:37.67 SPR.command \"stats_on\" @15:07:37.77 SPR.command \"start 0 1\" @15:07:38.52 SPR.start /var/log/esp/spr22may1415h.spr.bz2 @15:07:40.52 Handoff.select :waste @15:07:47.19 Syringe tare is 18% of full scale @15:07:47.22 PinPort.in :locking @15:07:47.29 PinPort.seek :locked @15:07:47.77 Archive.in :fast @15:07:47.86 Lysis2.in :fast @15:07:47.90 Lysis1.seek 1350uL @15:07:47.94 Archive.seek :full @15:07:48.05 Lysis2.seek :full @15:07:50.03 Plunge.seek :reagent @15:07:50.90 Evacuating puck with filter bubble point of 50psi @15:07:50.92 PinPort.seek :locked @15:07:51.01 Handoff.select :waste @15:07:57.59 Air syringe pumping up to 1 stroke to reach 8psi @15:07:57.60 Air stroke #1 of 1 @15:07:57.69 Air.in :pressurize @15:07:57.75 Air.seek :pressurized @15:08:09.33 1.9psi after pressurize @15:08:09.36 Air.in :compress @15:08:09.45 Air.seek :evac @15:08:13.54 0.8psi after compress @15:08:26.10 -0.1psi after compress (stable) @15:08:26.12 Air.in :default @15:08:26.19 Air.hold @15:08:26.36 at -0.1psi Opened to waste @15:08:26.37 Handoff.select :blocked @15:08:26.52 Archive syringe pumping up to 8 strokes to reach 50psi @15:08:26.53 Archive stroke #1 of 8 @15:08:26.61 Archive.in :pressurize @15:08:26.68 Archive.seek :pressurized @15:08:39.53 -0.0psi after pressurize @15:08:39.55 Archive.in :compress @15:08:39.64 Archive.seek :empty @15:08:54.34 30.0psi after compress @15:09:06.92 29.5psi after compress (stable) @15:09:06.94 Archive.in :gulp @15:09:07.01 Archive.seek :topVent @15:09:14.18 29.6psi after gulp @15:09:26.75 29.5psi after gulp (stable) @15:09:26.76 Archive stroke #2 of 8 @15:09:26.85 Archive.in :pressurize @15:09:26.92 Archive.seek :pressurized @15:09:39.80 29.0psi after pressurize @15:09:40.18 Archive.in :compress @15:09:40.28 Archive.seek :empty @15:09:54.96 31.8psi after compress @15:10:07.53 33.0psi after compress (stable) @15:10:07.55 Archive.in :gulp @15:10:07.66 Archive.seek :topVent @15:10:14.82 34.5psi after gulp @15:10:27.39 35.7psi after gulp (stable) @15:10:27.40 Archive stroke #3 of 8 @15:10:27.52 Archive.in :pressurize @15:10:27.58 Archive.seek :pressurized @15:10:40.45 36.5psi after pressurize @15:10:40.47 Archive.in :compress @15:10:40.54 Archive.seek :empty @15:10:55.23 39.6psi after compress @15:11:31.83 46.6psi after compress (stable) @15:11:31.86 Archive.in :gulp @15:11:31.93 Archive.seek :topVent @15:11:39.09 47.5psi after gulp @15:11:51.69 48.0psi after gulp (stable) @15:11:51.72 Archive stroke #4 of 8 @15:11:51.81 Archive.in :pressurize @15:11:51.88 Archive.seek :pressurized @15:12:04.74 48.1psi after pressurize @15:12:04.76 Archive.in :compress @15:12:04.83 Archive.seek :empty @15:12:19.52 49.2psi after compress @15:12:23.00 Reached 50.0 of 50.0psi after pumping 6920uL (4.00 strokes) @15:12:23.01 Archive.in :default @15:12:23.08 Archive.hold @15:12:23.15 Handoff.select :waste @15:12:35.33 delay 1:00 @15:13:35.34 Handoff.select :blocked @15:13:58.02 Handoff.select :waste @15:13:58.14 2.3psi at evacEnd @15:13:58.15 Handoff.select :blocked @15:13:58.28 Archive.in :fast @15:13:58.34 Archive.seek :topVent @15:14:12.01 Stable @0.8psi after Handoff blocked @15:14:12.03 Archive syringe pumping up to 8 strokes to reach 31psi @15:14:12.05 Archive stroke #1 of 8 @15:14:12.14 Archive.in :pressurize @15:14:12.20 Archive.seek :pressurized @15:14:25.06 1.4psi after pressurize @15:14:25.08 Archive.in :compress @15:14:25.16 Archive.seek :empty @15:14:39.84 3.2psi after compress @15:15:02.41 7.5psi after compress (stable) @15:15:02.43 Archive.in :gulp @15:15:02.51 Archive.seek :topVent @15:15:09.67 8.6psi after gulp @15:15:22.24 9.7psi after gulp (stable) @15:15:22.25 Archive stroke #2 of 8 @15:15:22.34 Archive.in :pressurize @15:15:22.41 Archive.seek :pressurized @15:15:35.26 11.0psi after pressurize @15:15:35.28 Archive.in :compress @15:15:35.35 Archive.seek :empty @15:15:50.07 15.8psi after compress @15:16:20.15 23.4psi after compress (stable) @15:16:20.17 Archive.in :gulp @15:16:20.25 Archive.seek :topVent @15:16:27.44 24.6psi after gulp @15:16:40.01 25.8psi after gulp (stable) @15:16:40.03 Archive stroke #3 of 8 @15:16:40.15 Archive.in :pressurize @15:16:40.23 Archive.seek :pressurized @15:16:53.09 27.3psi after pressurize @15:16:53.11 Archive.in :compress @15:16:53.19 Archive.seek :empty @15:17:07.30 Reached 30.9 of 30.8psi after pumping 5178uL (2.99 strokes) @15:17:07.31 Archive.in :default @15:17:07.38 Archive.hold @15:17:07.45 Handoff.select :waste @15:17:14.64 delay 1:00 @15:18:14.65 Handoff.select :blocked @15:18:37.35 Handoff.select :waste @15:18:37.48 2.2psi at evacEnd @15:18:37.49 Air.seek :fullVent @15:18:38.92 Archive.in :fast @15:18:38.99 Archive.seek :topVent @15:18:46.04 Seawater evacuated, Presure above/below filter released. Lysis begins @15:18:46.13 Lysis1.in :slow @15:18:46.20 Lysis1.seek 1050uL @15:19:16.24 delay 5 seconds @15:19:21.25 Handoff.select :blocked @15:19:21.43 Lysis1.seek 450uL @15:20:21.39 delay 3 seconds @15:20:24.47 Air.in mix with 1.40048 parts Lysis1 @15:20:24.92 Air.seek :evac @15:20:24.98 Lysis1.seek 300uL @15:20:40.06 Lysis1.seek :empty @15:21:10.16 Lysis buffer delivered @31.1psi @15:21:10.18 Polling Can every 2:00 @15:21:10.73 PuckHeater.configure :default #ambient 21.2C @15:21:10.78 PuckHeater.seek 79.8C @15:22:06.44 PuckHeater.hold 2:00,79.8C @15:24:06.70 Polling Can every 2:00 @15:24:07.23 PuckHeater.configure :default #ambient 21.3C @15:24:07.29 PuckHeater.hold 30 seconds,78.7C @15:24:37.49 Polling Can every 2:00 @15:24:38.03 PuckHeater.configure :default #ambient 21.3C @15:24:38.09 PuckHeater.hold 30 seconds,78.2C @15:25:08.30 Polling Can every 2:00 @15:25:08.84 PuckHeater.configure :default #ambient 21.3C @15:25:08.89 PuckHeater.hold 10:00,77.7C @15:35:09.40 Lysis complete. Syringe pressure @33.9psi @15:35:09.42 Handoff.select :blocked @15:35:09.47 Archive syringe pumping up to 5 strokes to reach 40psi Archive stroke #1 of 5 @15:35:09.58 Archive.in :pressurize @15:35:09.67 Archive.seek :pressurized @15:35:22.52 33.6psi after pressurize @15:35:22.54 Archive.in :compress @15:35:22.61 Archive.seek :empty @15:35:28.81 Reached 42.7 of 40.0psi after pumping 1547uL (0.89 strokes) @15:35:28.82 Archive.in :default @15:35:28.89 Archive.hold @15:35:28.97 delay 2 seconds @15:35:30.99 Archive.in :fast @15:35:31.05 Archive.seek :full @15:35:37.58 Lysis1.seek 138uL @15:35:51.44 delay 1 second @15:35:52.47 Archive.seek :full @15:35:52.51 Lysis1.seek :empty @15:36:06.48 Initial air pressure @49.8psi @15:36:06.56 Lysis1.in :extract @15:36:06.64 Lysis1.seek 600uL,nil @15:36:09.99 Archive syringe pumping up to 6 strokes to reach 25psi @15:36:10.00 Archive stroke #1 of 6 @15:36:10.10 Archive.in :pressurize @15:36:10.21 Archive.seek :pressurized @15:36:23.08 15.5psi after pressurize @15:36:23.09 Archive.in :compress @15:36:23.17 Archive.seek :empty @15:36:27.65 Syringe::LysatePlungerStuck in PROCESSING -- at < 276uL during Lysis Syringe #1 (LyS1) move @15:36:27.68 Lysis1.in :default @15:36:27.75 Lysis1.seek 240uL @15:36:28.31 Reached 28.1 of 25.0psi after pumping 1524uL (0.88 strokes) @15:36:28.32 Archive.in :default @15:36:28.41 Archive.hold @15:36:29.56 Lysis1.in :extract @15:36:29.62 Lysis1.seek 600uL,nil @15:36:34.84 Archive syringe pumping up to 6 strokes to reach 25psi @15:36:34.85 Archive stroke #1 of 6 @15:36:34.94 Archive.in :compress @15:36:35.00 Archive.seek :empty @15:36:36.73 Archive.in :default @15:36:36.78 Archive.hold @15:36:36.93 Initial 600uL lysate @16.4psi @15:36:36.94 Handoff.select :blocked @15:36:37.04 Initial air pressure @17.3psi @15:36:37.12 Lysis1.seek 825uL,nil @15:36:37.75 Archive syringe pumping up to 6 strokes to reach 17psi @15:36:37.76 Archive stroke #1 of 6 @15:36:37.86 Archive.in :compress @15:36:37.92 Archive.seek :empty @15:36:44.11 Archive.in :default @15:36:44.17 Archive.hold @15:36:44.41 Recovered 825uL lysate @17.3psi @15:36:44.42 Air.in :halfSpeed @15:36:44.49 Air.seek :fullVent @15:36:46.70 Puck Top Vented, bottom @2.2psi @15:36:46.71 Handoff.select :waste @15:36:46.84 delay 5 seconds @15:36:51.92 Handoff open to waste, bottom @0.0psi @15:36:51.93 Air.in :default @15:36:52.01 Air.seek :evac @15:36:53.42 Lysis2.in :DAmix @15:36:53.53 Lysis1.in :DAmix @15:36:53.98 Lysis2.seek 1480uL @15:36:54.01 Lysis1.seek 575uL @15:37:29.07 delay 5 seconds @15:37:34.08 Handoff.select SPR @15:37:34.20 SPR.command \"start 2 14\" @15:37:34.77 SPR stabilized @15:37:34.91 delay 10 seconds @15:37:44.92 SPR.command \"start 1 0\" @15:37:48.13 Waiting up to 4:00 for SPR to enter state 1 @15:39:50.52 SPR.command \"hold_on\" @15:39:52.43 SPR Dilution 1 of 1 -- Experiment 1 with 300.0uL L1 + 300.0uL L2 @15:39:52.87 Lysis2.seek 1180uL @15:39:52.93 Lysis1.seek 275uL @15:40:34.93 delay 15 seconds @15:40:49.97 SPR.command \"hold_off\" @15:40:52.57 Waiting up to 38:00 for SPR to enter state 7 @16:01:41.48 SPRsummary:-41.8747,54.1987,72.6147,120.531 after 3401s @16:08:18.71 SPR analysis completed @16:08:25.79 Ended log spr22may1415h.spr.bz2 @16:08:25.81 SPR.command \"stats_off\" @16:08:27.39 -> Cmd.stop @16:08:27.49 Handoff.select :close @16:08:27.61 Gate.power :heat,:OFF @16:08:27.63 Gate.power :cartridge,:OFF @16:08:27.72 Carousel.seek 50 @16:08:27.90 Plunge.seek :locked @16:08:28.75 PinPort.in :unlocking @16:08:28.82 PinPort.seek :clear @16:08:29.36 Archive.in :unlocking @16:08:29.49 Archive.seek :clear @16:08:29.52 Air.in :unlocking @16:08:29.70 Air.seek :clear @16:08:29.81 Lysis1.in :unlocking @16:08:29.90 Lysis1.seek :clear @16:08:29.97 Lysis2.in :unlocking @16:08:30.05 Lysis2.seek :clear @16:08:33.63 Gate.power :motor,:OFF @16:08:33.65 Gate.power :core,:OFF @16:08:33.67 Gate.power :analytic1,:OFF @16:08:33.69 Gate.power :analytic2,:OFF @16:08:33.72 Gate.power :analytic3,:OFF @16:08:33.74 Gate.power :main,:OFF @16:08:33.76 Safely stopped and ready to power off ##-- file closed 2022-05-14T23:52:24.121Z ##-- file opened 2022-05-14T23:52:24.123Z @16:52:22.08 -> showStatus @16:52:24.10 -> Cmd.loadCartridge -6 @16:52:24.16 Gate.power :main,:ON,limit to 5000mA @16:52:24.18 Gate.power :analytic1,:ON,limit to 5000mA @16:52:24.20 Gate.power :analytic2,:ON,limit to 5000mA @16:52:24.22 Gate.power :analytic3,:ON,limit to 5000mA @16:52:24.38 Powering core bus @16:52:26.65 SPR Module 1, FW Rev. B, FPGA Rev. C @16:52:27.10 Archive.configure :default @16:52:27.23 Air.configure :default @16:52:27.34 Lysis1.configure :default @16:52:27.45 Lysis2.configure :default @16:52:27.58 Plunge.configure :default @16:52:27.71 SamplePump.configure :default @16:52:27.84 Toroid.configure :default @16:52:27.97 Carousel.configure :default @16:52:28.10 Pressure.configure :default @16:52:28.23 ExtraPump.configure :default @16:52:28.33 PinPort.configure :default @16:52:28.39 All elf controllers running firmware version 4.79 @16:52:28.42 Gate.power :motor,:ON,limit to 5000mA @16:52:28.54 Archive.in :default @16:52:28.87 Archive.home.jog 0 @16:52:29.05 Toroid.in :default @16:52:29.09 Plunge.in :default @16:52:29.13 Lysis1.in :default @16:52:29.21 Air.in :default @16:52:29.25 PinPort.in :default @16:52:29.28 Lysis2.in :default @16:52:29.47 Toroid.home.jog 0 @16:52:29.54 Lysis1.home.jog 0 @16:52:29.56 Plunge.home.jog 0 @16:52:29.59 Air.home.jog 0 @16:52:29.62 PinPort.home.jog 0 @16:52:29.64 Lysis2.home.jog 0 @16:52:30.13 Archive.in :homing @16:52:30.34 Toroid.in :homing @16:52:30.37 Plunge.in :homing @16:52:30.40 Archive.jog 1396 @16:52:30.45 PinPort.in :homing @16:52:30.48 Lysis2.in :homing @16:52:30.51 Lysis1.in :homing @16:52:30.55 Air.in :homing @16:52:30.74 Plunge.jog 1563 @16:52:30.79 Toroid.jog 647 @16:52:30.91 Lysis2.jog 1398 @16:52:30.94 Air.jog 1385 @16:52:30.96 PinPort.jog -105 @16:52:30.99 Lysis1.jog 1383 @16:52:31.26 PinPort.setRawPosition! 0 @16:52:31.31 PinPort.seek :home @16:52:31.40 PinPort.in :default @16:52:31.78 Archive.setRawPosition! 50 @16:52:31.84 Archive.seek :home @16:52:32.05 Plunge.setRawPosition! 50 @16:52:32.11 Plunge.seek :home @16:52:32.22 Lysis2.setRawPosition! 50 @16:52:32.25 Lysis1.setRawPosition! 50 @16:52:32.27 Archive.in :default @16:52:32.36 Lysis2.seek :home @16:52:32.44 Lysis1.seek :home @16:52:32.57 Air.setRawPosition! 50 @16:52:32.60 Plunge.in :default @16:52:32.65 Air.seek :home @16:52:32.80 Lysis2.in :default @16:52:32.83 Lysis1.in :default @16:52:32.99 Air.in :default @16:52:33.07 Toroid.setRawPosition! 0 @16:52:33.13 Toroid.seek :home @16:52:33.23 Toroid.in :default @16:52:33.40 Toroid.seek :clear @16:52:35.01 Carousel.in :default @16:52:35.08 Carousel.home.jog 0 @16:52:35.56 Carousel.in :default @16:52:35.63 Carousel.seek 50 @16:52:35.79 Selecting Cartridge 57 @16:52:36.05 Carousel.seek 57 @16:52:37.76 Lysis1.in :fast @16:52:37.82 Lysis1.seek :locked @16:52:40.42 Plunge.seek :locked @16:52:40.55 Air.in :fast @16:52:40.61 Air.seek :locked @16:52:43.07 Powering cartridge bus @16:52:45.67 Gate.setIR 1750,5000,0,6 @16:52:45.80 Gate.setIR 0,5000,0,6 @16:52:45.85 Gate.power :cartridge,:OFF @16:52:46.39 Mounted archive Cartridge @16:53:03.69 -> Cmd.startFiltering @16:53:03.93 Preparing to filter cartridge 57 @16:53:04.20 Priming sample loop w/100ml, bypass w/10ml @16:53:04.21 SamplePump.setPosition! 0ml @16:53:04.26 Bypass.open @16:53:05.71 Intake.open @16:53:06.47 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @16:53:09.04 Vacuum tare is 54% of full scale @16:53:09.17 Pressure.in :default @16:53:09.23 Pressure.hold @16:53:09.41 SamplePump.in :prime @16:53:09.48 SamplePump.seek 10ml,59 seconds @16:53:18.08 Pressure.stop @16:53:18.13 SamplePump.setPosition! 0ml @16:53:18.18 Exhaust.open @16:53:19.65 Bypass.close @16:53:21.17 Pressure.in :default @16:53:21.23 Pressure.hold @16:53:21.46 SamplePump.in :prime @16:53:21.52 SamplePump.seek 100ml,5:16 @16:54:45.42 Pressure.stop @16:54:45.47 Bypass.open @16:54:46.15 Intake.close @16:54:47.28 Toroid.in :hold @16:54:47.34 Toroid.seek :crack @16:54:48.85 Toroid.seek :cartridge @16:54:49.95 Toroid.in :default @16:54:50.01 Toroid.seek :clear @16:54:51.97 Pressurizing cartridge to 26psi above 16.1psia @16:54:51.99 SamplePump.setPosition! 0ml @16:54:52.04 Intake.open @16:54:52.69 Bypass.close @16:54:53.35 Exhaust.close @16:54:54.21 Pressure.in :default @16:54:54.27 Pressure.hold @16:54:54.45 SamplePump.in :charge @16:54:54.52 SamplePump.seek 2.3ml,42 seconds @16:55:02.55 Pressure.stop @16:55:02.60 Intake.close @16:55:03.33 Pressurized cartridge with 0.309ml to 26.0psi @16:55:03.34 Isolated @39.5psia (23.5psi) @16:55:03.35 Verifying cartridge holds at least 0.65..0.85 of 39.5psia @16:55:03.39 Waiting up to 20 seconds for cartridge pressure to stabilize +/-1.50psi @16:55:07.97 Cartridge pressure fell 1% to 39.3psia @16:55:08.05 Sampling 1000.0ml @16:55:08.07 SamplePump.setPosition! 0ml @16:55:08.13 Exhaust.open @16:55:08.87 Intake.open @16:55:09.67 Pressure.in :default @16:55:09.73 Pressure.hold @16:55:09.86 Sea 1.9m deep (17.6psia) @16:55:10.00 SamplePump.in :sample @16:55:10.07 SamplePump.seek 1000ml,1:23:48 @16:55:12.70 Cartridge 57 filtering 1/1000ml at 0.48ml/s with 23.5psi vacuum @16:56:12.71 Cartridge 57 filtering 32/1000ml at 0.48ml/s with 23.1psi vacuum 1.9m deep (17.6psia) @16:57:12.70 Cartridge 57 filtering 62/1000ml at 0.48ml/s with 24.7psi vacuum @16:58:12.71 Cartridge 57 filtering 93/1000ml at 0.48ml/s with 18.1psi vacuum @16:59:12.70 Cartridge 57 filtering 123/1000ml at 0.48ml/s with 29.2psi vacuum @17:00:12.71 Cartridge 57 filtering 153/1000ml at 0.48ml/s with 23.6psi vacuum @17:01:12.70 Cartridge 57 filtering 182/1000ml at 0.46ml/s with 23.5psi vacuum @17:02:12.71 Cartridge 57 filtering 212/1000ml at 0.53ml/s with 21.0psi vacuum 3.0m deep (19.1psia) @17:03:12.70 Cartridge 57 filtering 242/1000ml at 0.51ml/s with 27.2psi vacuum @17:04:12.71 Cartridge 57 filtering 271/1000ml at 0.52ml/s with 20.7psi vacuum 1.9m deep (17.5psia) @17:05:12.71 Cartridge 57 filtering 300/1000ml at 0.47ml/s with 23.7psi vacuum @17:06:12.71 Cartridge 57 filtering 329/1000ml at 0.46ml/s with 26.3psi vacuum @17:07:12.70 Cartridge 57 filtering 359/1000ml at 0.46ml/s with 25.5psi vacuum @17:08:12.71 Cartridge 57 filtering 388/1000ml at 0.49ml/s with 26.7psi vacuum 1.6m deep (17.1psia) @17:09:12.70 Cartridge 57 filtering 417/1000ml at 0.46ml/s with 17.8psi vacuum @17:10:12.71 Cartridge 57 filtering 446/1000ml at 0.52ml/s with 28.2psi vacuum @17:11:12.70 Cartridge 57 filtering 476/1000ml at 0.46ml/s with 23.3psi vacuum @17:12:12.71 Cartridge 57 filtering 505/1000ml at 0.53ml/s with 25.1psi vacuum @17:13:12.70 Cartridge 57 filtering 534/1000ml at 0.50ml/s with 28.8psi vacuum @17:14:12.71 Cartridge 57 filtering 564/1000ml at 0.46ml/s with 22.1psi vacuum @17:15:12.71 Cartridge 57 filtering 593/1000ml at 0.48ml/s with 12.0psi vacuum 3.8m deep (20.3psia) @17:16:12.71 Cartridge 57 filtering 622/1000ml at 0.53ml/s with 27.1psi vacuum @17:17:12.71 Cartridge 57 filtering 651/1000ml at 0.46ml/s with 28.1psi vacuum @17:18:12.71 Cartridge 57 filtering 681/1000ml at 0.45ml/s with 22.8psi vacuum @17:19:12.71 Cartridge 57 filtering 710/1000ml at 0.45ml/s with 23.5psi vacuum @17:20:12.71 Cartridge 57 filtering 739/1000ml at 0.48ml/s with 29.3psi vacuum @17:21:12.71 Cartridge 57 filtering 768/1000ml at 0.53ml/s with 26.0psi vacuum @17:22:12.71 Cartridge 57 filtering 797/1000ml at 0.48ml/s with 17.3psi vacuum @17:23:12.71 Cartridge 57 filtering 826/1000ml at 0.47ml/s with 28.8psi vacuum @17:24:12.71 Cartridge 57 filtering 856/1000ml at 0.48ml/s with 13.6psi vacuum @17:25:12.71 Cartridge 57 filtering 885/1000ml at 0.53ml/s with 25.5psi vacuum @17:26:12.71 Cartridge 57 filtering 914/1000ml at 0.52ml/s with 26.2psi vacuum @17:27:12.71 Cartridge 57 filtering 944/1000ml at 0.47ml/s with 28.0psi vacuum @17:28:12.71 Cartridge 57 filtering 973/1000ml at 0.46ml/s with 21.7psi vacuum @17:29:08.54 Pressure.stop @17:29:08.66 Intake.close @17:29:08.70 Exhaust.close @17:29:08.85 Toroid.in :hold @17:29:08.92 Toroid.seek :bypass @17:29:10.53 Toroid.in :default @17:29:10.59 Toroid.seek :clear @17:29:12.21 Sampled 1000.0ml @17:29:13.70 -> Cmd.startProcessing @17:29:14.12 Plunge.seek :reagent @17:29:14.92 Sample loop closed. Ready to Deliver Reagents @17:29:14.93 Archive.seek :sealed @17:29:18.88 Archive.seek :evac @17:29:32.92 delay 1:00 @17:30:32.94 Archive.seek :clear @17:30:50.43 RNAlater soak for 10:00 @17:40:50.45 Archive.seek :tVent @17:40:52.89 delay 1 second @17:40:53.91 Archive.seek :evac @17:41:09.42 delay 10 seconds @17:41:19.45 Sample preserved and evacuated @17:41:20.54 -> Cmd.stop @17:41:20.68 Carousel.seek 57 @17:41:20.87 Plunge.seek :locked @17:41:21.80 Archive.in :unlocking @17:41:21.91 Archive.seek :clear @17:41:22.00 Air.in :unlocking @17:41:22.13 Air.seek :clear @17:41:22.17 Lysis1.in :unlocking @17:41:22.34 Lysis1.seek :clear @17:41:26.01 Gate.power :motor,:OFF @17:41:26.03 Gate.power :core,:OFF @17:41:26.05 Gate.power :analytic1,:OFF @17:41:26.08 Gate.power :analytic2,:OFF @17:41:26.10 Gate.power :analytic3,:OFF @17:41:26.12 Gate.power :main,:OFF @17:41:26.14 Safely stopped and ready to power off ##-- file closed 2022-05-15T05:26:25.529Z