##-- file opened 2019-08-22T19:58:05.294Z @15:58:05.84 -> showStatus @15:58:07.44 -> Cmd.loadCartridge -4 @15:58:07.58 Gate.power :main,:ON,limit to 5000mA @15:58:07.59 Gate.power :analytic1,:ON,limit to 5000mA @15:58:07.62 Gate.power :analytic2,:ON,limit to 5000mA @15:58:07.64 Gate.power :analytic3,:ON,limit to 5000mA @15:58:07.77 Powering core bus @15:58:10.10 SPR Module 1, FW Rev. B, FPGA Rev. C @15:58:10.25 Archive.configure :default @15:58:10.37 Air.configure :default @15:58:10.47 Lysis1.configure :default @15:58:10.57 Lysis2.configure :default @15:58:10.69 Plunge.configure :default @15:58:10.81 SamplePump.configure :default @15:58:10.93 ExtraPump.configure :default @15:58:11.05 Toroid.configure :default @15:58:11.17 Carousel.configure :default @15:58:11.29 Pressure.configure :default @15:58:11.40 PinPort.configure :default @15:58:11.46 All elf controllers running firmware version 4.58 @15:58:11.48 Gate.power :motor,:ON,limit to 5000mA @15:58:11.64 Archive.reconfigure :default @15:58:11.91 Archive.home.jog 0 @15:58:12.06 Toroid.reconfigure :default @15:58:12.12 Plunge.reconfigure :default @15:58:12.16 PinPort.reconfigure :default @15:58:12.19 Lysis1.reconfigure :default @15:58:12.24 Lysis2.reconfigure :default @15:58:12.30 Air.reconfigure :default @15:58:12.52 Lysis2.home.jog 0 @15:58:12.58 PinPort.home.jog 0 @15:58:12.63 Toroid.home.jog 0 @15:58:12.69 Plunge.home.jog 0 @15:58:12.75 Air.home.jog 0 @15:58:12.80 Lysis1.home.jog 0 @15:58:13.34 Toroid.reconfigure :homing @15:58:13.36 Plunge.reconfigure :homing @15:58:13.41 PinPort.reconfigure :homing @15:58:13.45 Lysis2.reconfigure :homing @15:58:13.50 Air.reconfigure :homing @15:58:13.53 Archive.reconfigure :homing @15:58:13.75 Lysis2.jog 1418 @15:58:13.81 Air.jog 1411 @15:58:13.86 Plunge.jog 1531 @15:58:13.91 Archive.jog 1382 @15:58:13.97 PinPort.jog -107 @15:58:14.03 Toroid.jog 608 @15:58:14.12 Lysis1.reconfigure :homing @15:58:14.19 Lysis1.jog 1396 @15:58:14.26 PinPort.setRawPosition! 0 @15:58:14.31 PinPort.seek :home @15:58:14.40 PinPort.reconfigure :default @15:58:14.91 Lysis2.setRawPosition! 50 @15:58:14.96 Lysis2.seek :home @15:58:15.06 Air.setRawPosition! 50 @15:58:15.10 Air.seek :home @15:58:15.18 Plunge.setRawPosition! 50 @15:58:15.20 Archive.setRawPosition! 50 @15:58:15.29 Archive.seek :home @15:58:15.32 Plunge.seek :home @15:58:15.50 Lysis2.reconfigure :default @15:58:15.53 Lysis1.setRawPosition! 50 @15:58:15.55 Air.reconfigure :default @15:58:15.66 Lysis1.seek :home @15:58:15.80 Archive.reconfigure :default @15:58:15.83 Plunge.reconfigure :default @15:58:15.99 Lysis1.reconfigure :default @15:58:16.10 Toroid.setRawPosition! 0 @15:58:16.15 Toroid.seek :home @15:58:16.24 Toroid.reconfigure :default @15:58:16.37 Toroid.seek :clear @15:58:17.99 Carousel.reconfigure :default @15:58:18.06 Carousel.home.jog 0 @15:58:18.55 Carousel.seek 32 @15:58:18.73 Selecting Cartridge 33 @15:58:18.97 Carousel.seek 33 @15:58:19.81 Lysis1.seek :locked @15:58:23.94 Plunge.seek :locked @15:58:24.06 Air.seek :locked @15:58:28.19 Powering cartridge bus @15:58:30.31 Gate.setIR 1750,5000,0,6 @15:58:30.44 Gate.setIR 0,5000,0,6 @15:58:30.48 Loaded Archive Cartridge Gate.power :cartridge,:OFF @15:58:46.25 -> Cmd.startFiltering @15:58:46.48 Duration of filtering limited to 2:05:00 @15:58:46.73 Priming sample loop w/100ml, bypass w/10ml @15:58:46.74 SamplePump.setPosition! 0ml @15:58:46.78 Bypass.open @15:58:48.31 Intake.open @15:58:49.12 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @15:58:51.95 Vacuum tare is 52% of full scale @15:58:52.08 Pressure.reconfigure :default @15:58:52.14 Pressure.hold @15:58:52.31 SamplePump.reconfigure :prime @15:58:52.38 SamplePump.seek 10ml,1:21 @15:59:01.33 Pressure.coast @15:59:01.38 SamplePump.setPosition! 0ml @15:59:01.43 Exhaust.open @15:59:02.89 Bypass.close @15:59:04.45 Pressure.reconfigure :default @15:59:04.51 Pressure.hold @15:59:04.73 SamplePump.reconfigure :prime @15:59:04.80 SamplePump.seek 100ml,8:51 @16:00:57.21 Pressure.coast @16:00:57.27 Bypass.open @16:00:57.97 Intake.close @16:00:58.79 Toroid.reconfigure :hold @16:00:58.86 Toroid.seek :crack @16:00:59.65 Toroid.reconfigure :default @16:00:59.71 Toroid.seek :clear @16:01:01.27 Toroid.reconfigure :hold @16:01:01.34 Toroid.seek :cartridge @16:01:03.15 Toroid.reconfigure :default @16:01:03.21 Toroid.seek :clear @16:01:05.18 Pressurizing cartridge to 26psi above 13.5psia @16:01:05.19 SamplePump.setPosition! 0ml @16:01:05.23 Intake.open @16:01:05.94 Bypass.close @16:01:06.69 Exhaust.close @16:01:07.50 Pressure.reconfigure :default @16:01:07.55 Pressure.hold @16:01:07.72 SamplePump.reconfigure :charge @16:01:07.79 SamplePump.seek 2.3ml,42 seconds @16:01:15.66 Pressure.coast @16:01:15.71 Intake.close @16:01:16.51 Pressurized cartridge with 0.288ml to 26.2psi @16:01:16.52 Isolated @36.5psia (22.9psi) @16:01:16.53 Checking for cartridge leaks from 36.5psia @16:01:16.56 Waiting up to 20 seconds for cartridge pressure to stabilize +/-0.75psi @16:01:21.66 Sampling 1000.0ml @16:01:21.67 SamplePump.setPosition! 0ml @16:01:21.72 Exhaust.open @16:01:22.41 Intake.open @16:01:23.29 Pressure.reconfigure :default @16:01:23.35 Pressure.hold @16:01:23.56 SamplePump.reconfigure :sample @16:01:23.64 SamplePump.seek 1000ml,1:23:53 @16:01:26.33 Cartridge 33 sampling 1/1000ml at 0.41ml/s with 19.2psi vacuum @16:02:26.33 Cartridge 33 sampling 25/1000ml at 0.42ml/s with 24.9psi vacuum @16:03:26.32 Cartridge 33 sampling 49/1000ml at 0.38ml/s with 28.1psi vacuum @16:04:26.33 Cartridge 33 sampling 71/1000ml at 0.37ml/s with 28.1psi vacuum @16:05:26.33 Cartridge 33 sampling 92/1000ml at 0.33ml/s with 22.8psi vacuum @16:06:26.33 Cartridge 33 sampling 112/1000ml at 0.35ml/s with 21.7psi vacuum @16:07:26.33 Cartridge 33 sampling 131/1000ml at 0.32ml/s with 26.4psi vacuum @16:08:26.33 Cartridge 33 sampling 148/1000ml at 0.28ml/s with 25.2psi vacuum @16:09:26.33 Cartridge 33 sampling 164/1000ml at 0.27ml/s with 23.7psi vacuum @16:10:26.33 Cartridge 33 sampling 179/1000ml at 0.26ml/s with 22.1psi vacuum @16:11:26.33 Cartridge 33 sampling 193/1000ml at 0.24ml/s with 25.1psi vacuum @16:12:26.33 Cartridge 33 sampling 206/1000ml at 0.23ml/s with 23.9psi vacuum @16:13:26.33 Cartridge 33 sampling 219/1000ml at 0.21ml/s with 26.0psi vacuum @16:14:26.33 Cartridge 33 sampling 231/1000ml at 0.20ml/s with 24.5psi vacuum @16:15:02.67 Flow averaged 0.29ml/s over 13:33 @16:15:02.70 Waiting up to 13 seconds for vacuum to reduce from 27.9 to 18.0psi @16:15:03.40 Relieved excess vacuum in 6.9 seconds @16:15:03.42 SamplePump.seek 1000ml,1:04:02 @16:15:26.33 Cartridge 33 sampling 243/1000ml at 0.20ml/s with 26.4psi vacuum @16:15:35.24 Flow averaged 0.28ml/s over 23 seconds @16:15:35.27 Waiting up to 12 seconds for vacuum to reduce from 27.8 to 18.0psi @16:15:35.97 Relieved excess vacuum in 9.6 seconds @16:15:35.99 SamplePump.seek 1000ml,1:03:30 @16:15:50.38 Flow averaged 0.22ml/s over 14 seconds @16:15:50.41 Waiting up to 15 seconds for vacuum to reduce from 28.7 to 18.0psi @16:15:51.11 Relieved excess vacuum in 2 seconds @16:15:51.13 SamplePump.seek 1000ml,1:03:16 @16:15:54.29 Flow estimate reduced to 0.18ml/s @16:15:54.30 Intake.close @16:15:54.35 Exhaust.close @16:15:54.54 Toroid.reconfigure :hold @16:15:54.61 Toroid.seek :bypass @16:15:56.23 Toroid.reconfigure :default @16:15:56.30 Toroid.seek :clear @16:15:57.92 Cartridge::Sampler::Clogged in FILTERING -- Cartridge clogged @16:15:57.94 Pressure.coast @16:15:58.12 Sampled 247.9ml @16:16:00.20 -> Cmd.startProcessing @16:16:00.44 Plunge.seek :reagent @16:16:01.32 Sample loop closed. Ready to Deliver Reagents @16:16:01.33 Archive.seek :sealed @16:16:05.60 Archive.seek :evac @16:16:19.53 delay 1:00 @16:17:19.56 Archive.seek :clear @16:17:37.27 RNAlater soak for 10:00 @16:27:37.30 Archive.seek :tVent @16:27:39.88 delay 1 second @16:27:40.90 Archive.seek :evac @16:27:56.52 delay 10 seconds @16:28:06.55 Archive.seek :tVent @16:28:22.17 delay 1 second @16:28:23.19 Archive.seek :evac @16:28:38.82 delay 10 seconds @16:28:48.85 Sample preserved and evacuated @16:28:49.83 -> Cmd.stop @16:28:49.97 Carousel.seek 33 @16:28:50.14 Plunge.seek :locked @16:28:50.98 PinPort.seek :clear @16:28:51.11 Archive.seek :clear @16:28:51.24 Air.seek :clear @16:28:51.37 Lysis1.seek :clear @16:29:08.87 Archive.coast @16:29:08.92 Air.coast @16:29:08.97 Lysis1.coast @16:29:09.02 Lysis2.coast @16:29:09.07 Plunge.coast @16:29:09.12 SamplePump.coast @16:29:09.17 Toroid.coast @16:29:09.22 Carousel.coast @16:29:09.27 PinPort.coast @16:29:09.45 Gate.power :motor,:OFF @16:29:09.46 Gate.power :core,:OFF @16:29:09.49 Gate.power :analytic1,:OFF @16:29:09.51 Gate.power :analytic2,:OFF @16:29:09.53 Gate.power :analytic3,:OFF @16:29:09.55 Gate.power :main,:OFF @16:29:09.57 Safely stopped and ready to power off ##-- file closed 2019-08-22T20:44:59.045Z ##-- file opened 2019-08-22T20:44:59.054Z @16:44:58.90 -> showStatus @16:45:00.92 -> Cmd.loadCartridge -15 @16:45:01.07 Gate.power :main,:ON,limit to 5000mA @16:45:01.08 Gate.power :analytic1,:ON,limit to 5000mA @16:45:01.10 Gate.power :analytic2,:ON,limit to 5000mA @16:45:01.12 Gate.power :analytic3,:ON,limit to 5000mA @16:45:01.26 Powering core bus @16:45:03.54 SPR Module 1, FW Rev. B, FPGA Rev. C @16:45:03.67 Archive.configure :default @16:45:03.80 Air.configure :default @16:45:03.90 Lysis1.configure :default @16:45:04.00 Lysis2.configure :default @16:45:04.12 Plunge.configure :default @16:45:04.24 SamplePump.configure :default @16:45:04.36 ExtraPump.configure :default @16:45:04.48 Toroid.configure :default @16:45:04.60 Carousel.configure :default @16:45:04.72 Pressure.configure :default @16:45:04.82 PinPort.configure :default @16:45:04.88 All elf controllers running firmware version 4.58 @16:45:04.90 Gate.power :motor,:ON,limit to 5000mA @16:45:05.05 Archive.reconfigure :default @16:45:05.39 Archive.home.jog 0 @16:45:05.53 Toroid.reconfigure :default @16:45:05.61 Plunge.reconfigure :default @16:45:05.64 Lysis1.reconfigure :default @16:45:05.68 Air.reconfigure :default @16:45:05.71 PinPort.reconfigure :default @16:45:05.79 Lysis2.reconfigure :default @16:45:06.01 Air.home.jog 0 @16:45:06.06 PinPort.home.jog 0 @16:45:06.12 Plunge.home.jog 0 @16:45:06.18 Toroid.home.jog 0 @16:45:06.24 Lysis1.home.jog 0 @16:45:06.30 Lysis2.home.jog 0 @16:45:06.48 Archive.reconfigure :homing @16:45:06.80 Archive.jog 1378 @16:45:06.96 Toroid.reconfigure :homing @16:45:07.00 Plunge.reconfigure :homing @16:45:07.03 PinPort.reconfigure :homing @16:45:07.07 Lysis1.reconfigure :homing @16:45:07.11 Air.reconfigure :homing @16:45:07.14 Lysis2.reconfigure :homing @16:45:07.38 Lysis2.jog 1426 @16:45:07.43 PinPort.jog -106 @16:45:07.49 Air.jog 1406 @16:45:07.55 Lysis1.jog 1394 @16:45:07.60 Plunge.jog 1548 @16:45:07.67 Toroid.jog 613 @16:45:07.74 PinPort.setRawPosition! 0 @16:45:07.78 PinPort.seek :home @16:45:07.87 PinPort.reconfigure :default @16:45:07.95 Archive.setRawPosition! 50 @16:45:07.99 Archive.seek :home @16:45:08.28 Archive.reconfigure :default @16:45:08.56 Lysis2.setRawPosition! 50 @16:45:08.60 Lysis2.seek :home @16:45:08.71 Lysis1.setRawPosition! 50 @16:45:08.73 Air.setRawPosition! 50 @16:45:08.81 Lysis1.seek :home @16:45:08.84 Air.seek :home @16:45:08.98 Plunge.setRawPosition! 50 @16:45:09.00 Lysis2.reconfigure :default @16:45:09.06 Plunge.seek :home @16:45:09.21 Lysis1.reconfigure :default @16:45:09.24 Air.reconfigure :default @16:45:09.37 Plunge.reconfigure :default @16:45:09.75 Toroid.setRawPosition! 0 @16:45:09.79 Toroid.seek :home @16:45:09.88 Toroid.reconfigure :default @16:45:10.02 Toroid.seek :clear @16:45:11.64 Carousel.reconfigure :default @16:45:11.71 Carousel.home.jog 0 @16:45:12.19 Carousel.seek 33 @16:45:12.35 Selecting Cartridge 30 @16:45:12.59 Carousel.seek 30 @16:45:13.83 Lysis1.seek :locked @16:45:17.96 Plunge.seek :locked @16:45:18.09 Air.seek :locked @16:45:22.22 Powering cartridge bus @16:45:24.35 Gate.setIR 1750,5000,0,6 @16:45:24.47 Gate.setIR 0,5000,0,6 @16:45:24.52 Loaded Lyse-n-Go Cartridge @16:45:24.54 PuckHeater.configure HeatConfig @16:45:24.59 Gate.power :heat,:ON,limit to 5000mA @16:45:40.11 -> Cmd.startFiltering @16:45:40.34 Duration of filtering limited to 2:05:00 @16:45:40.60 Priming sample loop w/100ml, bypass w/10ml @16:45:40.61 SamplePump.setPosition! 0ml @16:45:40.66 Bypass.open @16:45:42.19 Intake.open @16:45:43.03 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @16:45:45.86 Vacuum tare is 52% of full scale @16:45:45.99 Pressure.reconfigure :default @16:45:46.05 Pressure.hold @16:45:46.21 SamplePump.reconfigure :prime @16:45:46.29 SamplePump.seek 10ml,1:21 @16:45:55.24 Pressure.coast @16:45:55.29 SamplePump.setPosition! 0ml @16:45:55.34 Exhaust.open @16:45:56.76 Bypass.close @16:45:58.32 Pressure.reconfigure :default @16:45:58.38 Pressure.hold @16:45:58.60 SamplePump.reconfigure :prime @16:45:58.67 SamplePump.seek 100ml,8:51 @16:47:53.20 Pressure.coast @16:47:53.26 Bypass.open @16:47:54.00 Intake.close @16:47:54.83 Toroid.reconfigure :hold @16:47:54.90 Toroid.seek :crack @16:47:55.69 Toroid.reconfigure :default @16:47:55.75 Toroid.seek :clear @16:47:57.31 Toroid.reconfigure :hold @16:47:57.38 Toroid.seek :cartridge @16:47:59.19 Toroid.reconfigure :default @16:47:59.25 Toroid.seek :clear @16:48:01.21 Pressurizing cartridge to 26psi above 14.9psia @16:48:01.23 SamplePump.setPosition! 0ml @16:48:01.27 Intake.open @16:48:01.99 Bypass.close @16:48:02.76 Exhaust.close @16:48:03.58 Pressure.reconfigure :default @16:48:03.63 Pressure.hold @16:48:03.80 SamplePump.reconfigure :charge @16:48:03.87 SamplePump.seek 2.3ml,42 seconds @16:48:13.64 Pressure.coast @16:48:13.69 Intake.close @16:48:14.47 Pressurized cartridge with 0.445ml to 26.5psi @16:48:14.48 Isolated @37.9psia (23.0psi) @16:48:14.49 Checking for cartridge leaks from 37.9psia @16:48:14.52 Waiting up to 20 seconds for cartridge pressure to stabilize +/-0.75psi @16:48:19.62 Sampling 1000.0ml @16:48:19.63 SamplePump.setPosition! 0ml @16:48:19.68 Exhaust.open @16:48:20.41 Intake.open @16:48:21.24 Pressure.reconfigure :default @16:48:21.29 Pressure.hold @16:48:21.51 SamplePump.reconfigure :sample @16:48:21.58 SamplePump.seek 1000ml,1:23:53 @16:48:24.28 Cartridge 30 sampling 1/1000ml at 0.55ml/s with 26.2psi vacuum @16:49:24.28 Cartridge 30 sampling 34/1000ml at 0.55ml/s with 28.5psi vacuum @16:50:24.28 Cartridge 30 sampling 66/1000ml at 0.53ml/s with 25.3psi vacuum @16:51:24.28 Cartridge 30 sampling 97/1000ml at 0.48ml/s with 24.0psi vacuum @16:52:24.28 Cartridge 30 sampling 126/1000ml at 0.45ml/s with 19.9psi vacuum @16:53:24.28 Cartridge 30 sampling 154/1000ml at 0.43ml/s with 26.4psi vacuum @16:54:24.28 Cartridge 30 sampling 181/1000ml at 0.47ml/s with 25.8psi vacuum @16:55:24.28 Cartridge 30 sampling 207/1000ml at 0.45ml/s with 26.3psi vacuum @16:56:24.28 Cartridge 30 sampling 232/1000ml at 0.41ml/s with 21.4psi vacuum @16:57:24.28 Cartridge 30 sampling 257/1000ml at 0.39ml/s with 19.8psi vacuum @16:58:24.28 Cartridge 30 sampling 280/1000ml at 0.38ml/s with 22.0psi vacuum @16:59:24.28 Cartridge 30 sampling 303/1000ml at 0.39ml/s with 20.5psi vacuum @17:00:24.28 Cartridge 30 sampling 325/1000ml at 0.37ml/s with 19.2psi vacuum @17:01:24.67 Cartridge 30 sampling 346/1000ml at 0.34ml/s with 24.1psi vacuum @17:02:24.28 Cartridge 30 sampling 365/1000ml at 0.32ml/s with 23.5psi vacuum @17:03:24.28 Cartridge 30 sampling 384/1000ml at 0.30ml/s with 23.8psi vacuum @17:04:24.28 Cartridge 30 sampling 401/1000ml at 0.29ml/s with 24.2psi vacuum @17:05:24.27 Cartridge 30 sampling 417/1000ml at 0.23ml/s with 25.5psi vacuum @17:06:24.28 Cartridge 30 sampling 433/1000ml at 0.22ml/s with 24.6psi vacuum @17:07:24.28 Cartridge 30 sampling 447/1000ml at 0.26ml/s with 23.4psi vacuum @17:08:24.28 Cartridge 30 sampling 461/1000ml at 0.25ml/s with 24.5psi vacuum @17:09:24.28 Cartridge 30 sampling 474/1000ml at 0.20ml/s with 26.7psi vacuum @17:10:24.27 Cartridge 30 sampling 487/1000ml at 0.22ml/s with 22.6psi vacuum @17:11:24.28 Cartridge 30 sampling 499/1000ml at 0.22ml/s with 22.6psi vacuum @17:12:24.28 Cartridge 30 sampling 512/1000ml at 0.20ml/s with 21.6psi vacuum @17:13:24.28 Cartridge 30 sampling 524/1000ml at 0.20ml/s with 27.1psi vacuum @17:14:24.28 Cartridge 30 sampling 536/1000ml at 0.21ml/s with 23.2psi vacuum @17:15:07.85 Flow averaged 0.34ml/s over 26:41 @17:15:07.88 Waiting up to 12 seconds for vacuum to reduce from 27.6 to 18.0psi @17:15:08.58 Relieved excess vacuum in 6.9 seconds @17:15:08.60 SamplePump.seek 1000ml,38:28 @17:15:24.27 Cartridge 30 sampling 548/1000ml at 0.20ml/s with 30.6psi vacuum @17:15:29.33 Flow averaged 0.26ml/s over 16 seconds @17:15:29.36 Waiting up to 11 seconds for vacuum to reduce from 27.3 to 18.0psi @17:15:30.06 Relieved excess vacuum in 5.7 seconds @17:15:30.08 SamplePump.seek 1000ml,38:07 @17:15:58.70 Flow averaged 0.25ml/s over 24 seconds @17:15:58.73 Waiting up to 17 seconds for vacuum to reduce from 29.5 to 18.0psi @17:15:59.43 Relieved excess vacuum in 6.2 seconds @17:15:59.45 SamplePump.seek 1000ml,37:39 @17:16:09.14 Flow estimate reduced to 0.20ml/s @17:16:09.15 Intake.close @17:16:09.21 Exhaust.close @17:16:09.38 Toroid.reconfigure :hold @17:16:09.45 Toroid.seek :bypass @17:16:11.07 Toroid.reconfigure :default @17:16:11.14 Toroid.seek :clear @17:16:12.76 Cartridge::Sampler::Clogged in FILTERING -- Cartridge clogged @17:16:12.78 Pressure.coast @17:16:12.96 Sampled 556.5ml @17:16:15.24 -> Cmd.startProcessing @17:16:17.09 SPR.command \"read_sequences\" @17:16:17.12 SPR.command \"stats_on\" @17:16:17.16 SPR.command \"start 0 1\" @17:16:19.17 Begun log /var/log/esp/spr19aug2217h.spr @17:16:19.98 Handoff.select :waste @17:16:20.13 Archive.seek :empty @17:16:27.36 Syringe tare is 20% of full scale @17:16:37.88 PinPort.seek :cartridge @17:16:42.44 Lysis1.seek 1350ul @17:16:44.91 Lysis2.seek 1700ul @17:16:48.01 Plunge.seek :reagent @17:16:48.85 Evacuating puck with filter bubble point of 50psi @17:16:48.88 PinPort.seek :cartridge @17:16:48.96 Handoff.select :waste @17:16:56.29 Air pumping 1 strokes to reach 8psi @17:16:56.30 Air.reconfigure :gulp @17:16:56.39 Air.seek :tVent @17:16:58.20 0.1psi after gulp @17:16:58.21 Air stroke #1 of 1 @17:16:58.24 Air.reconfigure :pressurize @17:16:58.33 Air.seek :pressurized @17:17:11.16 0.1psi after pressurize @17:17:11.17 Air.reconfigure :compress @17:17:11.25 Air.seek :evac @17:17:13.91 0.3psi after compress @17:17:28.20 0.2psi after compress (stable) @17:17:28.32 at 0.1psi Opened to waste @17:17:28.33 Handoff.select :blocked @17:17:28.50 Air pumping 10 strokes to reach 50psi @17:17:28.52 Air.reconfigure :gulp @17:17:28.60 Air.seek :tVent @17:17:38.50 3.9psi after gulp @17:17:38.51 Air stroke #1 of 10 @17:17:38.52 Air.reconfigure :pressurize @17:17:38.61 Air.seek :pressurized @17:17:51.44 5.5psi after pressurize @17:17:51.45 Air.reconfigure :compress @17:17:51.53 Air.seek :evac @17:17:54.19 6.4psi after compress @17:18:43.49 29.4psi after compress (stable) @17:18:43.51 Air.reconfigure :gulp @17:18:43.58 Air.seek :tVent @17:18:53.48 31.2psi after gulp @17:18:53.49 Air stroke #2 of 10 @17:18:53.51 Air.reconfigure :pressurize @17:18:53.58 Air.seek :pressurized @17:19:06.41 30.4psi after pressurize @17:19:06.42 Air.reconfigure :compress @17:19:06.50 Air.seek :evac @17:19:09.17 29.1psi after compress @17:19:47.81 43.7psi after compress (stable) @17:19:47.83 Air.reconfigure :gulp @17:19:47.90 Air.seek :tVent @17:19:57.79 46.7psi after gulp @17:19:57.80 Air stroke #3 of 10 @17:19:57.82 Air.reconfigure :pressurize @17:19:57.90 Air.seek :pressurized @17:20:10.73 45.3psi after pressurize @17:20:10.74 Air.reconfigure :compress @17:20:10.82 Air.seek :evac @17:20:13.48 42.3psi after compress @17:20:26.08 Reached 50.0 of 50.0psi after pumping 6230ul (4.00 strokes) @17:20:26.10 Handoff.select :waste @17:20:57.02 delay 30 seconds @17:21:27.04 Handoff.select :blocked @17:21:52.05 Handoff.select :waste @17:21:52.17 PSI at @3.01psi at evacEnd @17:21:52.18 Handoff.select :blocked @17:21:52.30 Air.reconfigure :gulp @17:21:52.41 Air.seek :tVent @17:22:09.52 Stable @4.2psi after Handoff blocked @17:22:09.61 Air pumping 10 strokes to reach 34psi @17:22:09.62 Air stroke #1 of 10 @17:22:09.64 Air.reconfigure :pressurize @17:22:09.72 Air.seek :pressurized @17:22:22.54 5.4psi after pressurize @17:22:22.55 Air.reconfigure :compress @17:22:22.63 Air.seek :evac @17:22:25.29 5.6psi after compress @17:23:13.97 14.8psi after compress (stable) @17:23:13.99 Air.reconfigure :gulp @17:23:14.07 Air.seek :tVent @17:23:23.96 16.3psi after gulp @17:23:23.97 Air stroke #2 of 10 @17:23:23.99 Air.reconfigure :pressurize @17:23:24.07 Air.seek :pressurized @17:23:36.89 16.6psi after pressurize @17:23:36.91 Air.reconfigure :compress @17:23:36.99 Air.seek :evac @17:23:39.65 16.4psi after compress @17:24:22.98 25.1psi after compress (stable) @17:24:23.01 Air.reconfigure :gulp @17:24:23.09 Air.seek :tVent @17:24:32.97 27.0psi after gulp @17:24:32.98 Air stroke #3 of 10 @17:24:33.00 Air.reconfigure :pressurize @17:24:33.08 Air.seek :pressurized @17:24:45.91 26.9psi after pressurize @17:24:45.92 Air.reconfigure :compress @17:24:46.00 Air.seek :evac @17:24:48.67 26.0psi after compress @17:25:24.16 32.3psi after compress (stable) @17:25:24.18 Air.reconfigure :gulp @17:25:24.26 Air.seek :tVent @17:25:29.10 Reached 34.2 of 34.2psi after pumping 4672ul (3.00 strokes) @17:25:29.11 Handoff.select :waste @17:25:52.34 delay 30 seconds @17:26:22.36 Handoff.select :blocked @17:26:47.36 Handoff.select :waste @17:26:47.48 PSI at @0.96psi at evacEnd @17:26:47.49 Air.reconfigure :default @17:26:47.61 Air.seek :fVent @17:26:56.05 delay 5 seconds @17:27:01.08 Seawater evacuated, Presure above/below filter released. Lysis begins @17:27:01.15 Lysis1.reconfigure :slow @17:27:01.21 Lysis1.seek 1050ul @17:27:31.23 delay 5 seconds @17:27:36.25 Handoff.select :blocked @17:27:36.41 Lysis1.seek 450ul @17:28:36.34 delay 3 seconds @17:28:39.42 Air.reconfigure to mix into 1.37806 parts Lysis1 @17:28:39.92 Air.seek :evac @17:28:39.96 Lysis1.seek 300ul @17:28:55.06 Air.reconfigure :default @17:28:55.12 Air.seek :full @17:29:09.33 Lysis1.seek :empty @17:29:39.41 Lysis Delivered. Syringe pressure @26.9psi @17:29:39.45 PuckHeater.seek 84C @17:30:17.40 PuckHeater.hold 15:00,84C @17:45:16.62 Lysis complete. Syringe pressure @35.3psi @17:45:16.63 Handoff.select :blocked @17:45:16.74 Lysis1.reconfigure :halfSpeed @17:45:16.80 Lysis1.seek 200ul @17:45:20.57 delay 1 second @17:45:21.59 Lysis1.seek :empty @17:45:25.41 Initial AirS pressure @35.2psi @17:45:25.47 Lysis1.reconfigure :extract @17:45:25.58 Lysis1.seek 900ul,10:00 @17:45:26.73 Air pumping 10 strokes to reach 21psi @17:45:26.74 Air stroke #1 of 10 @17:45:26.76 Air.reconfigure :pressurize @17:45:26.84 Air.seek :pressurized @17:45:39.66 15.3psi after pressurize @17:45:39.68 Air.reconfigure :compress @17:45:39.77 Air.seek :evac @17:45:42.44 17.9psi after compress @17:45:56.37 15.3psi after compress (stable) @17:45:56.39 Air.reconfigure :gulp @17:45:56.47 Air.seek :tVent @17:46:06.36 15.8psi after gulp @17:46:06.37 Air stroke #2 of 10 @17:46:06.39 Air.reconfigure :pressurize @17:46:06.47 Air.seek :pressurized @17:46:19.30 15.7psi after pressurize @17:46:19.31 Air.reconfigure :compress @17:46:19.40 Air.seek :evac @17:46:22.09 15.8psi after compress @17:46:36.03 15.5psi after compress (stable) @17:46:36.05 Air.reconfigure :gulp @17:46:36.12 Air.seek :tVent @17:46:46.01 13.8psi after gulp @17:46:46.02 Air stroke #3 of 10 @17:46:46.04 Air.reconfigure :pressurize @17:46:46.12 Air.seek :pressurized @17:46:58.95 15.8psi after pressurize @17:46:58.96 Air.reconfigure :compress @17:46:59.04 Air.seek :evac @17:47:01.70 16.8psi after compress @17:47:03.63 Air.reconfigure :default @17:47:03.69 Air.hold @17:47:03.86 Lysis1 at 900ul @16.2psi @17:47:03.89 Lysis1.reconfigure :default @17:47:03.97 Lysis1.seek 925ul @17:47:04.74 Lysis1 at 925ul, bottom @14.1psi after recovery @17:47:05.88 Lysis1 at 925ul, bottom @17.3psi @17:47:05.90 Air.reconfigure :halfSpeed @17:47:05.97 Air.seek :fVent @17:47:08.22 Puck Top Vented, bottom @3.4psi @17:47:08.23 Handoff.select :waste @17:47:08.35 delay 5 seconds @17:47:13.37 delay 5 seconds @17:47:18.39 Handoff.select SPR @17:47:18.50 SPR.command \"start 2 14\" @17:47:19.59 delay 10 seconds @17:47:29.61 SPR.command \"start 2 0\" @17:47:33.34 Waiting up to 11:00 for SPR to enter state 1 @17:56:05.85 SPR.command \"hold_on\" @17:56:07.75 SPR Dilution 1 of 1 -- Running Experiment 2 @17:56:07.76 Lysis1.reconfigure :DAmix @17:56:07.87 Lysis2.reconfigure :DAmix @17:56:08.23 Lysis1.seek 675ul @17:56:08.32 Lysis2.seek 1450ul @17:56:43.75 Lysis1.seek 375ul @17:56:43.79 Lysis2.seek 1150ul @17:57:25.80 volL1 = 300.0 and volL2 = 300.0 @17:57:25.81 delay 15 seconds @17:57:40.84 SPR.command \"hold_off\" @17:57:44.35 Waiting up to 25:00 for SPR to enter state 7 @18:09:20.37 SPR Analysis has Completed @18:09:20.39 Handoff.select :waste @18:09:21.29 Ended log /var/log/esp/spr19aug2217h.spr @18:09:21.30 SPR.command \"stats_off\" @18:09:22.81 -> Cmd.stop @18:09:22.90 Handoff.select :close @18:09:23.03 Gate.power :heat,:OFF @18:09:23.05 Gate.power :cartridge,:OFF @18:09:23.13 Carousel.seek 30 @18:09:23.31 Plunge.seek :locked @18:09:24.15 PinPort.seek :clear @18:09:28.76 Archive.seek :clear @18:09:28.89 Air.reconfigure :default @18:09:29.03 Lysis1.reconfigure :default @18:09:29.14 Air.seek :clear @18:09:29.21 Lysis1.seek :clear @18:09:29.29 Lysis2.reconfigure :default @18:09:29.37 Lysis2.seek :clear @18:09:46.50 Archive.coast @18:09:46.55 Air.coast @18:09:46.60 Lysis1.coast @18:09:46.66 Lysis2.coast @18:09:46.70 Plunge.coast @18:09:46.75 SamplePump.coast @18:09:46.80 Toroid.coast @18:09:46.85 Carousel.coast @18:09:46.91 PinPort.coast @18:09:47.09 Gate.power :motor,:OFF @18:09:47.11 Gate.power :core,:OFF @18:09:47.13 Gate.power :analytic1,:OFF @18:09:47.15 Gate.power :analytic2,:OFF @18:09:47.17 Gate.power :analytic3,:OFF @18:09:47.19 Gate.power :main,:OFF @18:09:47.21 Safely stopped and ready to power off ##-- file closed 2019-08-23T01:58:22.214Z ##-- file opened 2019-08-23T01:58:22.216Z @21:58:22.35 -> showStatus @21:58:24.43 -> Cmd.loadCartridge -4 @21:58:24.57 Gate.power :main,:ON,limit to 5000mA @21:58:24.59 Gate.power :analytic1,:ON,limit to 5000mA @21:58:24.61 Gate.power :analytic2,:ON,limit to 5000mA @21:58:24.63 Gate.power :analytic3,:ON,limit to 5000mA @21:58:24.76 Powering core bus @21:58:27.04 SPR Module 1, FW Rev. B, FPGA Rev. C @21:58:27.20 Archive.configure :default @21:58:27.33 Air.configure :default @21:58:27.43 Lysis1.configure :default @21:58:27.52 Lysis2.configure :default @21:58:27.65 Plunge.configure :default @21:58:27.77 SamplePump.configure :default @21:58:27.89 ExtraPump.configure :default @21:58:28.01 Toroid.configure :default @21:58:28.14 Carousel.configure :default @21:58:28.25 Pressure.configure :default @21:58:28.35 PinPort.configure :default @21:58:28.41 All elf controllers running firmware version 4.58 @21:58:28.43 Gate.power :motor,:ON,limit to 5000mA @21:58:28.63 Archive.reconfigure :default @21:58:28.89 Archive.home.jog 0 @21:58:29.02 Toroid.reconfigure :default @21:58:29.10 Plunge.reconfigure :default @21:58:29.13 Lysis1.reconfigure :default @21:58:29.19 Air.reconfigure :default @21:58:29.24 PinPort.reconfigure :default @21:58:29.28 Lysis2.reconfigure :default @21:58:29.50 PinPort.home.jog 0 @21:58:29.55 Toroid.home.jog 0 @21:58:29.61 Plunge.home.jog 0 @21:58:29.67 Lysis1.home.jog 0 @21:58:29.73 Air.home.jog 0 @21:58:29.80 Lysis2.home.jog 0 @21:58:30.11 Archive.reconfigure :homing @21:58:30.32 Toroid.reconfigure :homing @21:58:30.36 Plunge.reconfigure :homing @21:58:30.39 PinPort.reconfigure :homing @21:58:30.44 Lysis1.reconfigure :homing @21:58:30.47 Air.reconfigure :homing @21:58:30.51 Lysis2.reconfigure :homing @21:58:30.73 Air.jog 1410 @21:58:30.78 Plunge.jog 1549 @21:58:30.84 Toroid.jog 611 @21:58:30.89 Lysis2.jog 1424 @21:58:30.95 Lysis1.jog 1396 @21:58:31.01 Archive.jog 1361 @21:58:31.06 PinPort.jog -107 @21:58:31.29 PinPort.setRawPosition! 0 @21:58:31.33 PinPort.seek :home @21:58:31.43 PinPort.reconfigure :default @21:58:31.89 Air.setRawPosition! 50 @21:58:31.94 Air.seek :home @21:58:32.02 Plunge.setRawPosition! 50 @21:58:32.09 Plunge.seek :home @21:58:32.18 Lysis2.setRawPosition! 50 @21:58:32.21 Archive.setRawPosition! 50 @21:58:32.25 Lysis1.setRawPosition! 50 @21:58:32.30 Lysis2.seek :home @21:58:32.41 Archive.seek :home @21:58:32.52 Lysis1.seek :home @21:58:32.64 Air.reconfigure :default @21:58:32.66 Plunge.reconfigure :default @21:58:32.81 Lysis2.reconfigure :default @21:58:32.84 Archive.reconfigure :default @21:58:32.97 Lysis1.reconfigure :default @21:58:33.00 Toroid.setRawPosition! 0 @21:58:33.09 Toroid.seek :home @21:58:33.18 Toroid.reconfigure :default @21:58:33.38 Toroid.seek :clear @21:58:35.01 Carousel.reconfigure :default @21:58:35.08 Carousel.home.jog 0 @21:58:35.57 Carousel.seek 30 @21:58:35.73 Selecting Cartridge 31 @21:58:36.33 Carousel.seek 31 @21:58:36.81 Lysis1.seek :locked @21:58:40.94 Plunge.seek :locked @21:58:41.07 Air.seek :locked @21:58:45.19 Powering cartridge bus @21:58:47.32 Gate.setIR 1750,5000,0,6 @21:58:47.44 Gate.setIR 0,5000,0,6 @21:58:47.48 Loaded Archive Cartridge Gate.power :cartridge,:OFF @21:59:03.20 -> Cmd.startFiltering @21:59:03.42 Duration of filtering limited to 2:05:00 @21:59:03.68 Priming sample loop w/100ml, bypass w/10ml @21:59:03.69 SamplePump.setPosition! 0ml @21:59:03.73 Bypass.open @21:59:05.27 Intake.open @21:59:06.11 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @21:59:08.94 Vacuum tare is 52% of full scale @21:59:09.07 Pressure.reconfigure :default @21:59:09.13 Pressure.hold @21:59:09.30 SamplePump.reconfigure :prime @21:59:09.37 SamplePump.seek 10ml,1:21 @21:59:18.32 Pressure.coast @21:59:18.37 SamplePump.setPosition! 0ml @21:59:18.42 Exhaust.open @21:59:19.86 Bypass.close @21:59:21.44 Pressure.reconfigure :default @21:59:21.50 Pressure.hold @21:59:21.72 SamplePump.reconfigure :prime @21:59:21.79 SamplePump.seek 100ml,8:51 @22:01:16.92 Pressure.coast @22:01:16.97 Bypass.open @22:01:17.73 Intake.close @22:01:18.56 Toroid.reconfigure :hold @22:01:18.62 Toroid.seek :crack @22:01:19.42 Toroid.reconfigure :default @22:01:19.48 Toroid.seek :clear @22:01:21.04 Toroid.reconfigure :hold @22:01:21.11 Toroid.seek :cartridge @22:01:22.92 Toroid.reconfigure :default @22:01:22.98 Toroid.seek :clear @22:01:24.96 Pressurizing cartridge to 26psi above 10.4psia @22:01:24.97 SamplePump.setPosition! 0ml @22:01:25.01 Intake.open @22:01:25.75 Bypass.close @22:01:26.47 Exhaust.close @22:01:27.28 Pressure.reconfigure :default @22:01:27.33 Pressure.hold @22:01:27.50 SamplePump.reconfigure :charge @22:01:27.57 SamplePump.seek 2.3ml,42 seconds @22:01:36.75 Pressure.coast @22:01:36.80 Intake.close @22:01:37.64 Pressurized cartridge with 0.394ml to 26.1psi @22:01:37.65 Isolated @33.4psia (23.0psi) @22:01:37.66 Checking for cartridge leaks from 33.4psia @22:01:37.69 Waiting up to 20 seconds for cartridge pressure to stabilize +/-0.75psi @22:01:42.73 Cartridge pressure fell 1% to 33.1psia @22:01:42.81 Sampling 1000.0ml @22:01:42.82 SamplePump.setPosition! 0ml @22:01:42.87 Exhaust.open @22:01:43.59 Intake.open @22:01:44.48 Pressure.reconfigure :default @22:01:44.54 Pressure.hold @22:01:44.75 SamplePump.reconfigure :sample @22:01:44.83 SamplePump.seek 1000ml,1:23:53 @22:01:47.52 Cartridge 31 sampling 1/1000ml at 0.42ml/s with 22.9psi vacuum @22:02:47.52 Cartridge 31 sampling 25/1000ml at 0.40ml/s with 22.3psi vacuum @22:03:47.52 Cartridge 31 sampling 48/1000ml at 0.35ml/s with 26.4psi vacuum @22:04:47.52 Cartridge 31 sampling 69/1000ml at 0.33ml/s with 22.2psi vacuum @22:05:47.52 Cartridge 31 sampling 90/1000ml at 0.34ml/s with 20.5psi vacuum @22:06:47.52 Cartridge 31 sampling 109/1000ml at 0.28ml/s with 24.6psi vacuum @22:07:47.52 Cartridge 31 sampling 127/1000ml at 0.31ml/s with 21.3psi vacuum @22:08:47.52 Cartridge 31 sampling 144/1000ml at 0.23ml/s with 24.6psi vacuum @22:09:47.52 Cartridge 31 sampling 160/1000ml at 0.26ml/s with 21.3psi vacuum 5.1m deep (22.3psia) @22:10:47.52 Cartridge 31 sampling 174/1000ml at 0.22ml/s with 27.1psi vacuum 4.2m deep (21.0psia) @22:11:47.52 Cartridge 31 sampling 188/1000ml at 0.20ml/s with 25.4psi vacuum 2.1m deep (17.7psia) @22:12:47.52 Cartridge 31 sampling 200/1000ml at 0.20ml/s with 25.4psi vacuum @22:13:47.95 Cartridge 31 sampling 212/1000ml at 0.20ml/s with 26.7psi vacuum @22:13:58.64 Flow averaged 0.29ml/s over 12:14 @22:13:58.67 Waiting up to 10 seconds for vacuum to reduce from 27.0 to 18.0psi @22:13:59.67 Relieved excess vacuum in 1.6 seconds @22:13:59.69 SamplePump.seek 1000ml,1:05:59 @22:14:17.24 Flow averaged 0.27ml/s over 14 seconds @22:14:17.27 Waiting up to 11 seconds for vacuum to reduce from 27.0 to 18.0psi @22:14:17.97 Relieved excess vacuum in 5.2 seconds @22:14:17.99 SamplePump.seek 1000ml,1:05:42 @22:14:24.43 Flow estimate reduced to 0.22ml/s @22:14:24.46 Waiting up to 11 seconds for vacuum to reduce from 27.0 to 18.0psi @22:14:25.46 Relieved excess vacuum in 4.4 seconds @22:14:25.48 SamplePump.seek 1000ml,1:05:35 @22:14:36.70 Flow estimate reduced to 0.17ml/s @22:14:36.71 Intake.close @22:14:36.78 Exhaust.close @22:14:36.94 Toroid.reconfigure :hold @22:14:37.01 Toroid.seek :bypass @22:14:38.63 Toroid.reconfigure :default @22:14:38.70 Toroid.seek :clear @22:14:40.32 Cartridge::Sampler::Clogged in FILTERING -- Cartridge clogged @22:14:40.34 Pressure.coast @22:14:40.53 Sampled 221.6ml @22:14:42.41 -> Cmd.startProcessing @22:14:42.66 Plunge.seek :reagent @22:14:43.52 Sample loop closed. Ready to Deliver Reagents @22:14:43.53 Archive.seek :sealed @22:14:47.80 Archive.seek :evac @22:15:01.73 delay 1:00 @22:16:01.76 Archive.seek :clear @22:16:19.47 RNAlater soak for 10:00 @22:26:19.49 Archive.seek :tVent @22:26:22.06 delay 1 second @22:26:23.08 Archive.seek :evac @22:26:38.69 delay 10 seconds @22:26:48.72 Archive.seek :tVent @22:27:04.33 delay 1 second @22:27:05.35 Archive.seek :evac @22:27:20.96 delay 10 seconds @22:27:30.99 Sample preserved and evacuated @22:27:32.03 -> Cmd.stop @22:27:32.17 Carousel.seek 31 @22:27:32.34 Plunge.seek :locked @22:27:33.18 PinPort.seek :clear @22:27:33.32 Archive.seek :clear @22:27:33.45 Air.seek :clear @22:27:33.58 Lysis1.seek :clear @22:27:51.06 Archive.coast @22:27:51.12 Air.coast @22:27:51.16 Lysis1.coast @22:27:51.21 Lysis2.coast @22:27:51.26 Plunge.coast @22:27:51.31 SamplePump.coast @22:27:51.36 Toroid.coast @22:27:51.41 Carousel.coast @22:27:51.46 PinPort.coast @22:27:51.64 Gate.power :motor,:OFF @22:27:51.66 Gate.power :core,:OFF @22:27:51.68 Gate.power :analytic1,:OFF @22:27:51.70 Gate.power :analytic2,:OFF @22:27:51.71 Gate.power :analytic3,:OFF @22:27:51.74 Gate.power :main,:OFF @22:27:51.76 Safely stopped and ready to power off ##-- file closed 2019-08-23T02:43:41.139Z ##-- file opened 2019-08-23T02:43:41.141Z @22:43:41.29 -> showStatus @22:43:43.31 -> Cmd.loadCartridge -15 @22:43:43.45 Gate.power :main,:ON,limit to 5000mA @22:43:43.47 Gate.power :analytic1,:ON,limit to 5000mA @22:43:43.49 Gate.power :analytic2,:ON,limit to 5000mA @22:43:43.51 Gate.power :analytic3,:ON,limit to 5000mA @22:43:43.64 Powering core bus @22:43:45.92 SPR Module 1, FW Rev. B, FPGA Rev. C @22:43:46.05 Archive.configure :default @22:43:46.17 Air.configure :default @22:43:46.27 Lysis1.configure :default @22:43:46.37 Lysis2.configure :default @22:43:46.49 Plunge.configure :default @22:43:46.60 SamplePump.configure :default @22:43:46.72 ExtraPump.configure :default @22:43:46.84 Toroid.configure :default @22:43:46.97 Carousel.configure :default @22:43:47.11 Pressure.configure :default @22:43:47.22 PinPort.configure :default @22:43:47.28 All elf controllers running firmware version 4.58 @22:43:47.31 Gate.power :motor,:ON,limit to 5000mA @22:43:47.50 Archive.reconfigure :default @22:43:47.75 Archive.home.jog 0 @22:43:47.88 Toroid.reconfigure :default @22:43:47.96 Plunge.reconfigure :default @22:43:48.00 Lysis1.reconfigure :default @22:43:48.04 PinPort.reconfigure :default @22:43:48.08 Air.reconfigure :default @22:43:48.14 Lysis2.reconfigure :default @22:43:48.37 Lysis2.home.jog 0 @22:43:48.42 Toroid.home.jog 0 @22:43:48.47 Plunge.home.jog 0 @22:43:48.53 Lysis1.home.jog 0 @22:43:48.58 Air.home.jog 0 @22:43:48.64 PinPort.home.jog 0 @22:43:48.91 Archive.reconfigure :homing @22:43:49.19 Toroid.reconfigure :homing @22:43:49.23 Plunge.reconfigure :homing @22:43:49.26 Air.reconfigure :homing @22:43:49.30 PinPort.reconfigure :homing @22:43:49.33 Lysis1.reconfigure :homing @22:43:49.37 Lysis2.reconfigure :homing @22:43:49.58 Lysis2.jog 1419 @22:43:49.64 Archive.jog 1366 @22:43:49.69 Plunge.jog 1552 @22:43:49.75 Lysis1.jog 1399 @22:43:49.81 PinPort.jog -106 @22:43:49.87 Toroid.jog 619 @22:43:49.92 Air.jog 1408 @22:43:50.04 PinPort.setRawPosition! 0 @22:43:50.08 PinPort.seek :home @22:43:50.18 PinPort.reconfigure :default @22:43:50.74 Lysis2.setRawPosition! 50 @22:43:50.79 Lysis2.seek :home @22:43:50.87 Archive.setRawPosition! 50 @22:43:50.94 Archive.seek :home @22:43:51.02 Plunge.setRawPosition! 50 @22:43:51.04 Lysis1.setRawPosition! 50 @22:43:51.12 Plunge.seek :home @22:43:51.16 Lysis1.seek :home @22:43:51.30 Lysis2.reconfigure :default @22:43:51.33 Air.setRawPosition! 50 @22:43:51.35 Archive.reconfigure :default @22:43:51.46 Air.seek :home @22:43:51.65 Plunge.reconfigure :default @22:43:51.68 Lysis1.reconfigure :default @22:43:51.83 Air.reconfigure :default @22:43:51.97 Toroid.setRawPosition! 0 @22:43:52.02 Toroid.seek :home @22:43:52.11 Toroid.reconfigure :default @22:43:52.24 Toroid.seek :clear @22:43:53.87 Carousel.reconfigure :default @22:43:53.94 Carousel.home.jog 0 @22:43:54.44 Carousel.seek 31 @22:43:54.62 Selecting Cartridge 28 @22:43:55.22 Carousel.seek 28 @22:43:56.12 Lysis1.seek :locked @22:44:00.25 Plunge.seek :locked @22:44:00.37 Air.seek :locked @22:44:04.50 Powering cartridge bus @22:44:06.63 Gate.setIR 1750,5000,0,6 @22:44:06.75 Gate.setIR 0,5000,0,6 @22:44:06.80 Loaded Lyse-n-Go Cartridge @22:44:06.82 PuckHeater.configure HeatConfig @22:44:06.87 Gate.power :heat,:ON,limit to 5000mA @22:44:22.25 -> Cmd.startFiltering @22:44:22.48 Duration of filtering limited to 2:05:00 @22:44:22.73 Priming sample loop w/100ml, bypass w/10ml @22:44:22.74 SamplePump.setPosition! 0ml @22:44:22.79 Bypass.open @22:44:24.27 Intake.open @22:44:25.07 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @22:44:27.91 Vacuum tare is 52% of full scale @22:44:28.04 Pressure.reconfigure :default @22:44:28.10 Pressure.hold @22:44:28.26 SamplePump.reconfigure :prime @22:44:28.34 SamplePump.seek 10ml,1:21 @22:44:37.28 Pressure.coast @22:44:37.33 SamplePump.setPosition! 0ml @22:44:37.38 Exhaust.open @22:44:38.78 Bypass.close @22:44:40.36 Pressure.hold @22:44:40.58 SamplePump.reconfigure :prime @22:44:40.66 SamplePump.seek 100ml,8:51 @22:46:35.73 Pressure.coast @22:46:35.79 Bypass.open @22:46:36.54 Intake.close @22:46:37.38 Toroid.reconfigure :hold @22:46:37.44 Toroid.seek :crack @22:46:38.24 Toroid.reconfigure :default @22:46:38.30 Toroid.seek :clear @22:46:39.86 Toroid.reconfigure :hold @22:46:39.93 Toroid.seek :cartridge @22:46:41.74 Toroid.reconfigure :default @22:46:41.80 Toroid.seek :clear @22:46:43.76 Pressurizing cartridge to 26psi above 13.8psia @22:46:43.78 SamplePump.setPosition! 0ml @22:46:43.82 Intake.open @22:46:44.57 Bypass.close @22:46:45.32 Exhaust.close @22:46:46.14 Pressure.reconfigure :default @22:46:46.19 Pressure.hold @22:46:46.36 SamplePump.reconfigure :charge @22:46:46.43 SamplePump.seek 2.3ml,42 seconds @22:46:57.46 Pressure.coast @22:46:57.51 Intake.close @22:46:58.32 Pressurized cartridge with 0.570ml to 26.1psi Isolated @36.7psia (22.9psi) @22:46:58.34 Checking for cartridge leaks from 36.7psia @22:46:58.37 Waiting up to 20 seconds for cartridge pressure to stabilize +/-0.75psi @22:47:03.46 Sampling 1000.0ml @22:47:03.47 SamplePump.setPosition! 0ml @22:47:03.52 Exhaust.open @22:47:04.24 Intake.open @22:47:05.13 Pressure.reconfigure :default @22:47:05.19 Pressure.hold @22:47:05.40 SamplePump.reconfigure :sample @22:47:05.48 SamplePump.seek 1000ml,1:23:53 @22:47:08.17 Cartridge 28 sampling 1/1000ml at 0.52ml/s with 24.2psi vacuum @22:48:08.17 Cartridge 28 sampling 33/1000ml at 0.50ml/s with 24.0psi vacuum @22:49:08.17 Cartridge 28 sampling 63/1000ml at 0.49ml/s with 27.1psi vacuum @22:50:08.17 Cartridge 28 sampling 92/1000ml at 0.46ml/s with 22.4psi vacuum @22:51:08.17 Cartridge 28 sampling 121/1000ml at 0.49ml/s with 25.8psi vacuum @22:52:08.17 Cartridge 28 sampling 148/1000ml at 0.44ml/s with 26.4psi vacuum @22:53:08.17 Cartridge 28 sampling 175/1000ml at 0.42ml/s with 23.9psi vacuum @22:54:08.16 Cartridge 28 sampling 201/1000ml at 0.42ml/s with 22.3psi vacuum @22:55:08.17 Cartridge 28 sampling 227/1000ml at 0.42ml/s with 28.7psi vacuum @22:56:08.17 Cartridge 28 sampling 252/1000ml at 0.44ml/s with 25.3psi vacuum @22:57:08.17 Cartridge 28 sampling 277/1000ml at 0.43ml/s with 25.4psi vacuum @22:58:08.17 Cartridge 28 sampling 301/1000ml at 0.42ml/s with 24.1psi vacuum @22:59:08.54 Cartridge 28 sampling 324/1000ml at 0.38ml/s with 28.3psi vacuum @23:00:08.17 Cartridge 28 sampling 347/1000ml at 0.37ml/s with 21.7psi vacuum @23:01:08.17 Cartridge 28 sampling 369/1000ml at 0.36ml/s with 22.9psi vacuum @23:02:08.17 Cartridge 28 sampling 390/1000ml at 0.34ml/s with 21.6psi vacuum @23:03:08.17 Cartridge 28 sampling 411/1000ml at 0.33ml/s with 28.3psi vacuum @23:04:08.16 Cartridge 28 sampling 431/1000ml at 0.33ml/s with 20.7psi vacuum @23:05:08.17 Cartridge 28 sampling 450/1000ml at 0.34ml/s with 23.6psi vacuum @23:06:08.17 Cartridge 28 sampling 468/1000ml at 0.31ml/s with 23.8psi vacuum @23:07:08.17 Cartridge 28 sampling 486/1000ml at 0.30ml/s with 23.1psi vacuum @23:08:08.17 Cartridge 28 sampling 503/1000ml at 0.28ml/s with 26.0psi vacuum @23:09:08.16 Cartridge 28 sampling 520/1000ml at 0.25ml/s with 26.2psi vacuum @23:10:08.17 Cartridge 28 sampling 535/1000ml at 0.22ml/s with 23.4psi vacuum @23:11:08.17 Cartridge 28 sampling 550/1000ml at 0.26ml/s with 25.7psi vacuum @23:12:08.17 Cartridge 28 sampling 565/1000ml at 0.24ml/s with 24.6psi vacuum @23:13:08.17 Cartridge 28 sampling 579/1000ml at 0.24ml/s with 26.0psi vacuum @23:14:08.17 Cartridge 28 sampling 592/1000ml at 0.22ml/s with 23.8psi vacuum @23:15:08.17 Cartridge 28 sampling 605/1000ml at 0.22ml/s with 24.5psi vacuum @23:16:08.17 Cartridge 28 sampling 618/1000ml at 0.20ml/s with 26.3psi vacuum @23:17:08.17 Cartridge 28 sampling 630/1000ml at 0.20ml/s with 27.3psi vacuum @23:18:08.17 Cartridge 28 sampling 643/1000ml at 0.20ml/s with 25.5psi vacuum @23:19:08.17 Cartridge 28 sampling 655/1000ml at 0.20ml/s with 22.9psi vacuum @23:20:08.17 Cartridge 28 sampling 667/1000ml at 0.20ml/s with 25.6psi vacuum @23:21:08.17 Cartridge 28 sampling 679/1000ml at 0.20ml/s with 24.1psi vacuum @23:22:04.77 Flow averaged 0.33ml/s over 34:53 @23:22:04.80 Waiting up to 14 seconds for vacuum to reduce from 28.3 to 18.0psi @23:22:05.50 Relieved excess vacuum in 7.2 seconds @23:22:05.52 SamplePump.seek 1000ml,26:19 @23:22:07.36 Flow estimate reduced to 0.26ml/s @23:22:07.40 Waiting up to 9 seconds for vacuum to reduce from 26.5 to 18.0psi @23:22:08.10 Relieved excess vacuum in 2.4 seconds @23:22:08.12 SamplePump.seek 1000ml,26:18 @23:22:08.28 Cartridge 28 sampling 691/1000ml at 0.01ml/s with 3.6psi vacuum @23:22:35.16 Flow averaged 0.24ml/s over 24 seconds @23:22:35.19 Waiting up to 12 seconds for vacuum to reduce from 27.5 to 18.0psi @23:22:35.89 Relieved excess vacuum in 4.6 seconds @23:22:35.91 SamplePump.seek 1000ml,25:50 @23:23:01.37 Flow averaged 0.22ml/s over 24 seconds @23:23:01.40 Waiting up to 12 seconds for vacuum to reduce from 27.8 to 18.0psi @23:23:02.10 Relieved excess vacuum in 3.1 seconds @23:23:02.12 SamplePump.seek 1000ml,25:25 @23:23:03.97 Flow estimate reduced to 0.18ml/s @23:23:03.98 Intake.close @23:23:04.03 Exhaust.close @23:23:04.21 Toroid.reconfigure :hold @23:23:04.28 Toroid.seek :bypass @23:23:05.90 Toroid.reconfigure :default @23:23:05.97 Toroid.seek :clear @23:23:07.59 Cartridge::Sampler::Clogged in FILTERING -- Cartridge clogged @23:23:07.61 Pressure.coast @23:23:07.79 Sampled 701.6ml @23:23:09.75 -> Cmd.startProcessing @23:23:11.60 SPR.command \"read_sequences\" @23:23:12.29 SPR.command \"stats_on\" @23:23:12.33 SPR.command \"start 0 1\" @23:23:14.33 Begun log /var/log/esp/spr19aug2223h.spr @23:23:15.14 Handoff.select :waste @23:23:15.32 Archive.seek :empty @23:23:22.50 Syringe tare is 20% of full scale @23:23:33.03 PinPort.seek :cartridge @23:23:37.59 Lysis1.seek 1350ul @23:23:40.07 Lysis2.seek 1700ul @23:23:43.16 Plunge.seek :reagent @23:23:44.00 Evacuating puck with filter bubble point of 50psi @23:23:44.03 PinPort.seek :cartridge @23:23:44.11 Handoff.select :waste @23:23:51.42 Air pumping 1 strokes to reach 8psi @23:23:51.44 Air.reconfigure :gulp @23:23:51.51 Air.seek :tVent @23:23:53.32 0.2psi after gulp @23:23:53.33 Air stroke #1 of 1 @23:23:53.35 Air.reconfigure :pressurize @23:23:53.43 Air.seek :pressurized @23:24:06.65 0.2psi after pressurize @23:24:06.68 Air.reconfigure :compress @23:24:06.76 Air.seek :evac @23:24:09.43 0.3psi after compress @23:24:23.37 0.3psi after compress (stable) @23:24:23.49 at 0.2psi Opened to waste @23:24:23.50 Handoff.select :blocked @23:24:23.69 Air pumping 10 strokes to reach 50psi @23:24:23.72 Air.reconfigure :gulp @23:24:23.80 Air.seek :tVent @23:24:33.67 6.3psi after gulp @23:24:33.68 Air stroke #1 of 10 @23:24:33.70 Air.reconfigure :pressurize @23:24:33.77 Air.seek :pressurized @23:24:46.60 11.4psi after pressurize @23:24:46.61 Air.reconfigure :compress @23:24:46.69 Air.seek :evac @23:24:49.36 12.8psi after compress @23:25:38.51 43.7psi after compress (stable) @23:25:38.52 Air.reconfigure :gulp @23:25:38.61 Air.seek :tVent @23:25:48.50 45.1psi after gulp @23:25:48.51 Air stroke #2 of 10 @23:25:48.53 Air.reconfigure :pressurize @23:25:48.61 Air.seek :pressurized @23:26:01.43 43.3psi after pressurize @23:26:01.44 Air.reconfigure :compress @23:26:01.53 Air.seek :evac @23:26:04.19 42.4psi after compress @23:26:09.26 Reached 50.1 of 50.0psi after pumping 4672ul (3.00 strokes) @23:26:09.28 Handoff.select :waste @23:26:20.50 delay 30 seconds @23:26:50.52 Handoff.select :blocked @23:27:03.97 Pressure too High, open to waste again (8.1psi) @23:27:03.99 Handoff.select :waste @23:27:04.11 delay 30 seconds @23:27:34.13 Handoff.select :blocked @23:27:38.21 Pressure too High, open to waste again (8.1psi) @23:27:38.23 Handoff.select :waste @23:27:38.35 delay 30 seconds @23:28:08.37 Handoff.select :blocked @23:28:38.75 Handoff.select :waste @23:28:38.87 PSI at @6.09psi at evacEnd @23:28:38.88 Handoff.select :blocked @23:28:39.00 Air.reconfigure :gulp @23:28:39.07 Air.seek :tVent @23:28:56.17 Stable @4.8psi after Handoff blocked @23:28:56.25 Air pumping 10 strokes to reach 35psi @23:28:56.26 Air stroke #1 of 10 @23:28:56.28 Air.reconfigure :pressurize @23:28:56.36 Air.seek :pressurized @23:29:09.20 5.2psi after pressurize @23:29:09.21 Air.reconfigure :compress @23:29:09.29 Air.seek :evac @23:29:11.97 7.4psi after compress @23:29:33.65 16.1psi after compress (stable) @23:29:33.67 Air.reconfigure :gulp @23:29:33.75 Air.seek :tVent @23:29:43.63 16.5psi after gulp @23:29:43.64 Air stroke #2 of 10 @23:29:43.66 Air.reconfigure :pressurize @23:29:43.74 Air.seek :pressurized @23:29:56.57 16.5psi after pressurize @23:29:56.58 Air.reconfigure :compress @23:29:56.67 Air.seek :evac @23:29:59.35 18.5psi after compress @23:30:20.28 26.3psi after compress (stable) @23:30:20.31 Air.reconfigure :gulp @23:30:20.39 Air.seek :tVent @23:30:30.28 26.7psi after gulp @23:30:30.29 Air stroke #3 of 10 @23:30:30.31 Air.reconfigure :pressurize @23:30:30.39 Air.seek :pressurized @23:30:43.22 26.6psi after pressurize @23:30:43.23 Air.reconfigure :compress @23:30:43.31 Air.seek :evac @23:30:45.98 28.1psi after compress @23:30:56.13 Reached 34.7 of 34.8psi after pumping 6230ul (4.00 strokes) @23:30:56.15 Handoff.select :waste @23:31:04.07 delay 30 seconds @23:31:34.09 Handoff.select :blocked @23:32:00.22 Handoff.select :waste @23:32:00.34 PSI at @4.62psi at evacEnd @23:32:00.35 Air.reconfigure :default @23:32:00.47 Air.seek :fVent @23:32:01.90 delay 5 seconds @23:32:06.92 Seawater evacuated, Presure above/below filter released. Lysis begins @23:32:06.99 Lysis1.reconfigure :slow @23:32:07.06 Lysis1.seek 1050ul @23:32:37.06 delay 5 seconds @23:32:42.08 Handoff.select :blocked @23:32:42.24 Lysis1.seek 450ul @23:33:42.15 delay 3 seconds @23:33:45.22 Air.reconfigure to mix into 1.37806 parts Lysis1 @23:33:45.62 Air.seek :evac @23:33:45.65 Lysis1.seek 300ul @23:34:00.76 Air.reconfigure :default @23:34:00.82 Air.seek :full @23:34:15.03 Lysis1.seek :empty @23:34:45.10 Lysis Delivered. Syringe pressure @22.6psi @23:34:45.16 PuckHeater.seek 84C @23:35:32.57 PuckHeater.hold 15:00,84C @23:50:28.00 Lysis complete. Syringe pressure @30.7psi @23:50:28.01 Handoff.select :blocked @23:50:28.13 Lysis1.reconfigure :halfSpeed @23:50:28.20 Lysis1.seek 200ul @23:50:31.97 delay 1 second @23:50:32.99 Lysis1.seek :empty @23:50:36.82 Initial AirS pressure @30.6psi @23:50:36.88 Lysis1.reconfigure :extract @23:50:36.97 Lysis1.seek 900ul,10:00 @23:50:38.13 Air pumping 10 strokes to reach 21psi @23:50:38.14 Air stroke #1 of 10 @23:50:38.16 Air.reconfigure :pressurize @23:50:38.24 Air.seek :pressurized @23:50:51.06 11.9psi after pressurize @23:50:51.07 Air.reconfigure :compress @23:50:51.14 Air.seek :evac @23:50:53.81 16.8psi after compress @23:51:08.13 15.6psi after compress (stable) @23:51:08.15 Air.reconfigure :gulp @23:51:08.22 Air.seek :tVent @23:51:18.11 16.0psi after gulp @23:51:18.12 Air stroke #2 of 10 @23:51:18.14 Air.reconfigure :pressurize @23:51:18.22 Air.seek :pressurized @23:51:31.07 15.9psi after pressurize @23:51:31.08 Air.reconfigure :compress @23:51:31.16 Air.seek :evac @23:51:33.82 15.1psi after compress @23:51:47.74 15.8psi after compress (stable) @23:51:47.76 Air.reconfigure :gulp @23:51:47.83 Air.seek :tVent @23:51:57.72 16.0psi after gulp @23:51:57.73 Air stroke #3 of 10 @23:51:57.75 Air.reconfigure :pressurize @23:51:57.82 Air.seek :pressurized @23:52:10.65 16.0psi after pressurize @23:52:10.66 Air.reconfigure :compress @23:52:10.74 Air.seek :evac @23:52:13.40 14.7psi after compress @23:52:27.26 15.6psi after compress (stable) @23:52:27.29 Air.reconfigure :gulp @23:52:27.37 Air.seek :tVent @23:52:37.25 16.2psi after gulp @23:52:37.26 Air stroke #4 of 10 @23:52:37.27 Air.reconfigure :pressurize @23:52:37.36 Air.seek :pressurized @23:52:50.18 15.9psi after pressurize @23:52:50.19 Air.reconfigure :compress @23:52:50.26 Air.seek :evac @23:52:52.93 16.5psi after compress @23:53:06.79 15.8psi after compress (stable) @23:53:06.81 Air.reconfigure :gulp @23:53:06.88 Air.seek :tVent @23:53:09.25 Reached 25.1 of 21.0psi after pumping 6230ul (4.00 strokes) @23:53:10.34 Air pumping 6.0 strokes to reach 21psi @23:53:10.36 Air.seek :tVent @23:53:12.62 Lysis1 at 900ul @24.5psi @23:53:12.63 Syringe::PressureError in PROCESSING -- 24.5psi is out of 11.0..22.5 range -- Skipping SPR @23:53:12.66 SPR.command \"start 2 14\" @23:53:14.10 Handoff.select :waste @23:53:14.59 Ended log /var/log/esp/spr19aug2223h.spr @23:53:14.60 SPR.command \"stats_off\" @23:53:16.18 -> Cmd.stop @23:53:16.27 Handoff.select :close @23:53:16.40 Gate.power :heat,:OFF @23:53:16.42 Gate.power :cartridge,:OFF @23:53:16.50 Carousel.seek 28 @23:53:16.68 Plunge.seek :locked @23:53:17.52 PinPort.seek :clear @23:53:22.13 Archive.seek :clear @23:53:22.26 Air.reconfigure :default @23:53:22.39 Lysis1.reconfigure :default @23:53:22.51 Air.seek :clear @23:53:22.57 Lysis1.seek :clear @23:53:22.66 Lysis2.seek :clear @23:53:39.86 Archive.coast @23:53:39.91 Air.coast @23:53:39.96 Lysis1.coast @23:53:40.01 Lysis2.coast @23:53:40.06 Plunge.coast @23:53:40.11 SamplePump.coast @23:53:40.16 Toroid.coast @23:53:40.21 Carousel.coast @23:53:40.27 PinPort.coast @23:53:40.45 Gate.power :motor,:OFF @23:53:40.47 Gate.power :core,:OFF @23:53:40.49 Gate.power :analytic1,:OFF @23:53:40.51 Gate.power :analytic2,:OFF @23:53:40.53 Gate.power :analytic3,:OFF @23:53:40.55 Gate.power :main,:OFF @23:53:40.57 Safely stopped and ready to power off ##-- file closed 2019-08-23T13:11:07.946Z ##-- file opened 2019-08-23T13:11:07.949Z @09:11:08.27 -> showStatus @09:11:10.28 -> Cmd.loadCartridge -4 @09:11:10.42 Gate.power :main,:ON,limit to 5000mA @09:11:10.43 Gate.power :analytic1,:ON,limit to 5000mA @09:11:10.45 Gate.power :analytic2,:ON,limit to 5000mA @09:11:10.47 Gate.power :analytic3,:ON,limit to 5000mA @09:11:10.60 Powering core bus @09:11:12.88 SPR Module 1, FW Rev. B, FPGA Rev. C @09:11:13.01 Archive.configure :default @09:11:13.13 Air.configure :default @09:11:13.23 Lysis1.configure :default @09:11:13.33 Lysis2.configure :default @09:11:13.45 Plunge.configure :default @09:11:13.57 SamplePump.configure :default @09:11:13.69 ExtraPump.configure :default @09:11:13.84 Toroid.configure :default @09:11:13.96 Carousel.configure :default @09:11:14.08 Pressure.configure :default @09:11:14.18 PinPort.configure :default @09:11:14.24 All elf controllers running firmware version 4.58 @09:11:14.26 Gate.power :motor,:ON,limit to 5000mA @09:11:14.43 Archive.reconfigure :default @09:11:14.72 Archive.home.jog 0 @09:11:14.85 Toroid.reconfigure :default @09:11:14.93 Lysis2.reconfigure :default @09:11:14.98 Plunge.reconfigure :default @09:11:15.03 Air.reconfigure :default @09:11:15.06 Lysis1.reconfigure :default @09:11:15.10 PinPort.reconfigure :default @09:11:15.35 Air.home.jog 0 @09:11:15.40 Lysis1.home.jog 0 @09:11:15.46 Toroid.home.jog 0 @09:11:15.52 Lysis2.home.jog 0 @09:11:15.57 Plunge.home.jog 0 @09:11:15.63 PinPort.home.jog 0 @09:11:15.88 Archive.reconfigure :homing @09:11:16.07 Archive.jog 1378 @09:11:16.25 Toroid.reconfigure :homing @09:11:16.27 Plunge.reconfigure :homing @09:11:16.30 Air.reconfigure :homing @09:11:16.34 PinPort.reconfigure :homing @09:11:16.38 Lysis1.reconfigure :homing @09:11:16.42 Lysis2.reconfigure :homing @09:11:16.65 Air.jog 1407 @09:11:16.71 Lysis2.jog 1428 @09:11:16.76 Plunge.jog 1539 @09:11:16.82 Toroid.jog 614 @09:11:16.88 PinPort.jog -107 @09:11:16.93 Lysis1.jog 1396 @09:11:17.11 PinPort.setRawPosition! 0 @09:11:17.15 PinPort.seek :home @09:11:17.26 PinPort.reconfigure :default @09:11:17.28 Archive.setRawPosition! 50 @09:11:17.34 Archive.seek :home @09:11:17.65 Archive.reconfigure :default @09:11:17.81 Air.setRawPosition! 50 @09:11:17.86 Air.seek :home @09:11:17.96 Lysis2.setRawPosition! 50 @09:11:18.01 Lysis2.seek :home @09:11:18.10 Plunge.setRawPosition! 50 @09:11:18.12 Lysis1.setRawPosition! 50 @09:11:18.20 Plunge.seek :home @09:11:18.24 Lysis1.seek :home @09:11:18.39 Lysis2.reconfigure :default @09:11:18.42 Air.reconfigure :default @09:11:18.55 Plunge.reconfigure :default @09:11:18.63 Lysis1.reconfigure :default @09:11:18.91 Toroid.setRawPosition! 0 @09:11:18.96 Toroid.seek :home @09:11:19.05 Toroid.reconfigure :default @09:11:19.17 Toroid.seek :clear @09:11:20.80 Carousel.reconfigure :default @09:11:20.87 Carousel.home.jog 0 @09:11:21.36 Carousel.seek 28 @09:11:21.51 Selecting Cartridge 29 @09:11:22.11 Carousel.seek 29 @09:11:22.59 Lysis1.seek :locked @09:11:26.72 Plunge.seek :locked @09:11:26.84 Air.seek :locked @09:11:30.97 Powering cartridge bus @09:11:33.09 Gate.setIR 1750,5000,0,6 @09:11:33.22 Gate.setIR 0,5000,0,6 @09:11:33.25 Loaded Archive Cartridge @09:11:33.26 Gate.power :cartridge,:OFF @09:11:48.97 -> Cmd.startFiltering @09:11:49.20 Duration of filtering limited to 2:05:00 @09:11:49.45 Priming sample loop w/100ml, bypass w/10ml @09:11:49.46 SamplePump.setPosition! 0ml @09:11:49.50 Bypass.open @09:11:51.01 Intake.open @09:11:51.84 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @09:11:54.68 Vacuum tare is 52% of full scale @09:11:54.81 Pressure.reconfigure :default @09:11:54.87 Pressure.hold @09:11:55.04 SamplePump.reconfigure :prime @09:11:55.11 SamplePump.seek 10ml,1:21 @09:12:04.05 Pressure.coast @09:12:04.10 SamplePump.setPosition! 0ml @09:12:04.15 Exhaust.open @09:12:05.59 Bypass.close @09:12:07.15 Pressure.reconfigure :default @09:12:07.21 Pressure.hold @09:12:07.43 SamplePump.reconfigure :prime @09:12:07.50 SamplePump.seek 100ml,8:51 @09:14:03.27 Pressure.coast @09:14:03.33 Bypass.open @09:14:04.08 Intake.close @09:14:04.93 Toroid.reconfigure :hold @09:14:04.99 Toroid.seek :crack @09:14:05.79 Toroid.reconfigure :default @09:14:05.85 Toroid.seek :clear @09:14:07.41 Toroid.reconfigure :hold @09:14:07.48 Toroid.seek :cartridge @09:14:09.29 Toroid.reconfigure :default @09:14:09.35 Toroid.seek :clear @09:14:11.31 Pressurizing cartridge to 26psi above 14.0psia @09:14:11.33 SamplePump.setPosition! 0ml @09:14:11.37 Intake.open @09:14:12.13 Bypass.close @09:14:12.88 Exhaust.close @09:14:13.71 Pressure.reconfigure :default @09:14:13.76 Pressure.hold @09:14:13.93 SamplePump.reconfigure :charge @09:14:14.00 SamplePump.seek 2.3ml,42 seconds @09:14:21.84 Pressure.coast @09:14:21.90 Intake.close @09:14:22.74 Pressurized cartridge with 0.286ml to 26.1psi @09:14:22.75 Isolated @36.1psia (22.1psi) @09:14:22.76 Checking for cartridge leaks from 36.1psia @09:14:22.79 Waiting up to 20 seconds for cartridge pressure to stabilize +/-0.75psi @09:14:27.83 Cartridge pressure fell 1% to 35.9psia @09:14:27.91 Sampling 1000.0ml @09:14:27.92 SamplePump.setPosition! 0ml @09:14:27.98 Exhaust.open @09:14:28.70 Intake.open @09:14:29.56 Pressure.reconfigure :default @09:14:29.62 Pressure.hold @09:14:29.83 SamplePump.reconfigure :sample @09:14:29.91 SamplePump.seek 1000ml,1:23:53 @09:14:32.59 Cartridge 29 sampling 1/1000ml at 0.36ml/s with 22.2psi vacuum @09:15:32.60 Cartridge 29 sampling 23/1000ml at 0.37ml/s with 26.3psi vacuum @09:16:32.60 Cartridge 29 sampling 42/1000ml at 0.34ml/s with 23.6psi vacuum @09:17:32.60 Cartridge 29 sampling 60/1000ml at 0.29ml/s with 23.3psi vacuum @09:18:32.60 Cartridge 29 sampling 75/1000ml at 0.23ml/s with 21.7psi vacuum @09:19:32.60 Cartridge 29 sampling 87/1000ml at 0.20ml/s with 24.1psi vacuum @09:20:11.43 Flow averaged 0.29ml/s over 5:33 @09:20:11.46 Waiting up to 13 seconds for vacuum to reduce from 28.1 to 18.0psi @09:20:12.46 Relieved excess vacuum in 9.7 seconds @09:20:12.48 SamplePump.seek 1000ml,1:15:56 @09:20:25.37 Flow estimate reduced to 0.23ml/s @09:20:25.40 Waiting up to 13 seconds for vacuum to reduce from 28.2 to 18.0psi @09:20:26.78 Relieved excess vacuum in 11.2 seconds @09:20:26.80 SamplePump.seek 1000ml,1:15:43 @09:20:31.64 Flow estimate reduced to 0.18ml/s @09:20:31.67 Intake.close @09:20:31.72 Exhaust.close @09:20:31.88 Toroid.reconfigure :hold @09:20:31.95 Toroid.seek :bypass @09:20:32.61 Cartridge 29 sampling 99/1000ml at 0.00ml/s with 0.2psi vacuum 1.9m deep (17.5psia) @09:20:33.57 Toroid.reconfigure :default @09:20:33.65 Toroid.seek :clear @09:20:35.27 Cartridge::Sampler::Clogged in FILTERING -- Cartridge clogged @09:20:35.29 Pressure.coast @09:20:35.47 Sampled 98.8ml @09:20:37.68 -> Cmd.startProcessing @09:20:37.93 Plunge.seek :reagent @09:20:38.79 Sample loop closed. Ready to Deliver Reagents @09:20:38.80 Archive.seek :sealed @09:20:43.08 Archive.seek :evac @09:20:57.02 delay 1:00 @09:21:57.04 Archive.seek :clear @09:22:14.75 RNAlater soak for 10:00 @09:32:14.77 Archive.seek :tVent @09:32:17.35 delay 1 second @09:32:18.37 Archive.seek :evac @09:32:34.00 delay 10 seconds @09:32:44.03 Archive.seek :tVent @09:32:59.66 delay 1 second @09:33:00.68 Archive.seek :evac @09:33:16.31 delay 10 seconds @09:33:26.34 Sample preserved and evacuated @09:33:27.25 -> Cmd.stop @09:33:27.39 Carousel.seek 29 @09:33:27.56 Plunge.seek :locked @09:33:28.39 PinPort.seek :clear @09:33:28.53 Archive.seek :clear @09:33:28.66 Air.seek :clear @09:33:28.79 Lysis1.seek :clear @09:33:46.29 Archive.coast @09:33:46.34 Air.coast @09:33:46.39 Lysis1.coast @09:33:46.44 Lysis2.coast @09:33:46.49 Plunge.coast @09:33:46.54 SamplePump.coast @09:33:46.59 Toroid.coast @09:33:46.64 Carousel.coast @09:33:46.69 PinPort.coast @09:33:46.88 Gate.power :motor,:OFF @09:33:46.90 Gate.power :core,:OFF @09:33:46.92 Gate.power :analytic1,:OFF @09:33:46.94 Gate.power :analytic2,:OFF @09:33:46.96 Gate.power :analytic3,:OFF @09:33:46.98 Gate.power :main,:OFF @09:33:47.00 Safely stopped and ready to power off ##-- file closed 2019-08-23T13:49:35.358Z ##-- file opened 2019-08-23T13:49:35.360Z @09:49:35.71 -> showStatus @09:49:37.73 -> Cmd.loadCartridge -15 @09:49:37.87 Gate.power :main,:ON,limit to 5000mA @09:49:37.88 Gate.power :analytic1,:ON,limit to 5000mA @09:49:37.91 Gate.power :analytic2,:ON,limit to 5000mA @09:49:37.93 Gate.power :analytic3,:ON,limit to 5000mA @09:49:38.06 Powering core bus @09:49:40.34 SPR Module 1, FW Rev. B, FPGA Rev. C @09:49:40.47 Archive.configure :default @09:49:40.59 Air.configure :default @09:49:40.69 Lysis1.configure :default @09:49:40.79 Lysis2.configure :default @09:49:40.91 Plunge.configure :default @09:49:41.02 SamplePump.configure :default @09:49:41.14 ExtraPump.configure :default @09:49:41.26 Toroid.configure :default @09:49:41.38 Carousel.configure :default @09:49:41.50 Pressure.configure :default @09:49:41.61 PinPort.configure :default @09:49:41.66 All elf controllers running firmware version 4.58 @09:49:41.69 Gate.power :motor,:ON,limit to 5000mA @09:49:41.85 Archive.reconfigure :default @09:49:42.17 Archive.home.jog 0 @09:49:42.30 Toroid.reconfigure :default @09:49:42.38 Plunge.reconfigure :default @09:49:42.42 Lysis2.reconfigure :default @09:49:42.45 Air.reconfigure :default @09:49:42.48 PinPort.reconfigure :default @09:49:42.53 Lysis1.reconfigure :default @09:49:42.79 Lysis2.home.jog 0 @09:49:42.85 Toroid.home.jog 0 @09:49:42.90 PinPort.home.jog 0 @09:49:42.96 Air.home.jog 0 @09:49:43.02 Plunge.home.jog 0 @09:49:43.07 Lysis1.home.jog 0 @09:49:43.34 Archive.reconfigure :homing @09:49:43.59 Toroid.reconfigure :homing @09:49:43.63 Plunge.reconfigure :homing @09:49:43.66 Lysis1.reconfigure :homing @09:49:43.70 Air.reconfigure :homing @09:49:43.73 PinPort.reconfigure :homing @09:49:43.77 Lysis2.reconfigure :homing @09:49:44.00 Air.jog 1402 @09:49:44.06 Lysis1.jog 1399 @09:49:44.12 Toroid.jog 619 @09:49:44.17 Plunge.jog 1547 @09:49:44.23 PinPort.jog -107 @09:49:44.29 Archive.jog 1378 @09:49:44.35 Lysis2.jog 1427 @09:49:44.47 PinPort.setRawPosition! 0 @09:49:44.52 PinPort.seek :home @09:49:44.61 PinPort.reconfigure :default @09:49:45.16 Air.setRawPosition! 50 @09:49:45.21 Air.seek :home @09:49:45.29 Lysis1.setRawPosition! 50 @09:49:45.35 Lysis1.seek :home @09:49:45.45 Plunge.setRawPosition! 50 @09:49:45.48 Archive.setRawPosition! 50 @09:49:45.55 Plunge.seek :home @09:49:45.60 Archive.seek :home @09:49:45.76 Lysis1.reconfigure :default @09:49:45.79 Lysis2.setRawPosition! 50 @09:49:45.82 Air.reconfigure :default @09:49:45.98 Lysis2.seek :home @09:49:46.08 Archive.reconfigure :default @09:49:46.10 Plunge.reconfigure :default @09:49:46.23 Toroid.setRawPosition! 0 @09:49:46.28 Toroid.seek :home @09:49:46.39 Lysis2.reconfigure :default @09:49:46.42 Toroid.reconfigure :default @09:49:46.81 Toroid.seek :clear @09:49:48.43 Carousel.reconfigure :default @09:49:48.50 Carousel.home.jog 0 @09:49:49.00 Carousel.seek 29 @09:49:49.14 Selecting Cartridge 26 @09:49:49.74 Carousel.seek 26 @09:49:50.65 Lysis1.seek :locked @09:49:54.77 Plunge.seek :locked @09:49:54.90 Air.seek :locked @09:49:59.03 Powering cartridge bus @09:50:01.16 Gate.setIR 1750,5000,0,6 @09:50:01.28 Gate.setIR 0,5000,0,6 @09:50:01.33 Loaded Lyse-n-Go Cartridge @09:50:01.34 PuckHeater.configure HeatConfig @09:50:01.40 Gate.power :heat,:ON,limit to 5000mA @09:50:16.82 -> Cmd.startFiltering @09:50:17.06 Duration of filtering limited to 2:05:00 @09:50:17.32 Priming sample loop w/100ml, bypass w/10ml @09:50:17.33 SamplePump.setPosition! 0ml @09:50:17.37 Bypass.open @09:50:18.84 Intake.open @09:50:19.65 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @09:50:22.49 Vacuum tare is 52% of full scale @09:50:22.62 Pressure.reconfigure :default @09:50:22.68 Pressure.hold @09:50:22.85 SamplePump.reconfigure :prime @09:50:22.92 SamplePump.seek 10ml,1:21 @09:50:31.87 Pressure.coast @09:50:31.92 SamplePump.setPosition! 0ml @09:50:31.97 Exhaust.open @09:50:33.40 Bypass.close @09:50:34.93 Pressure.reconfigure :default @09:50:34.99 Pressure.hold @09:50:35.21 SamplePump.reconfigure :prime @09:50:35.28 SamplePump.seek 100ml,8:51 @09:52:31.14 Pressure.coast @09:52:31.20 Bypass.open @09:52:31.93 Intake.close @09:52:32.77 Toroid.reconfigure :hold @09:52:32.84 Toroid.seek :crack @09:52:33.63 Toroid.reconfigure :default @09:52:33.70 Toroid.seek :clear @09:52:35.25 Toroid.reconfigure :hold @09:52:35.32 Toroid.seek :cartridge @09:52:37.13 Toroid.reconfigure :default @09:52:37.19 Toroid.seek :clear @09:52:39.17 Pressurizing cartridge to 26psi above 14.6psia @09:52:39.18 SamplePump.setPosition! 0ml @09:52:39.22 Intake.open @09:52:39.95 Bypass.close @09:52:40.70 Exhaust.close @09:52:41.52 Pressure.reconfigure :default @09:52:41.58 Pressure.hold @09:52:41.74 SamplePump.reconfigure :charge @09:52:41.82 SamplePump.seek 2.3ml,42 seconds @09:52:52.37 Pressure.coast @09:52:52.43 Intake.close @09:52:53.21 Pressurized cartridge with 0.522ml to 26.3psi @09:52:53.22 Isolated @37.5psia (22.9psi) @09:52:53.23 Checking for cartridge leaks from 37.5psia @09:52:53.26 Waiting up to 20 seconds for cartridge pressure to stabilize +/-0.75psi @09:52:58.36 Sampling 1000.0ml @09:52:58.37 SamplePump.setPosition! 0ml @09:52:58.42 Exhaust.open @09:52:59.15 Intake.open @09:53:00.02 Pressure.reconfigure :default @09:53:00.08 Pressure.hold @09:53:00.29 SamplePump.reconfigure :sample @09:53:00.37 SamplePump.seek 1000ml,1:23:53 @09:53:03.06 Cartridge 26 sampling 1/1000ml at 0.52ml/s with 24.9psi vacuum @09:54:03.05 Cartridge 26 sampling 33/1000ml at 0.51ml/s with 25.6psi vacuum @09:55:03.04 Cartridge 26 sampling 63/1000ml at 0.48ml/s with 21.8psi vacuum @09:56:03.05 Cartridge 26 sampling 91/1000ml at 0.46ml/s with 22.6psi vacuum @09:57:03.05 Cartridge 26 sampling 117/1000ml at 0.44ml/s with 25.3psi vacuum @09:58:03.05 Cartridge 26 sampling 141/1000ml at 0.39ml/s with 26.4psi vacuum @09:59:03.05 Cartridge 26 sampling 164/1000ml at 0.38ml/s with 27.4psi vacuum @10:00:03.04 Cartridge 26 sampling 185/1000ml at 0.34ml/s with 26.3psi vacuum @10:01:03.05 Cartridge 26 sampling 204/1000ml at 0.32ml/s with 23.3psi vacuum @10:02:03.05 Cartridge 26 sampling 221/1000ml at 0.29ml/s with 24.1psi vacuum @10:03:03.05 Cartridge 26 sampling 236/1000ml at 0.22ml/s with 20.9psi vacuum @10:04:03.06 Cartridge 26 sampling 251/1000ml at 0.21ml/s with 26.1psi vacuum @10:05:03.04 Cartridge 26 sampling 264/1000ml at 0.20ml/s with 25.3psi vacuum @10:06:03.05 Cartridge 26 sampling 276/1000ml at 0.20ml/s with 21.8psi vacuum @10:07:03.05 Cartridge 26 sampling 288/1000ml at 0.20ml/s with 26.4psi vacuum @10:08:03.05 Cartridge 26 sampling 300/1000ml at 0.20ml/s with 25.9psi vacuum @10:08:21.97 Flow averaged 0.33ml/s over 15:13 @10:08:22.00 Waiting up to 14 seconds for vacuum to reduce from 28.5 to 18.0psi @10:08:22.70 Relieved excess vacuum in 9.6 seconds @10:08:22.72 SamplePump.seek 1000ml,58:31 @10:08:40.47 Flow averaged 0.27ml/s over 14 seconds @10:08:40.50 Waiting up to 14 seconds for vacuum to reduce from 28.6 to 18.0psi @10:08:41.20 Relieved excess vacuum in 5.4 seconds @10:08:41.22 SamplePump.seek 1000ml,58:13 @10:08:43.10 Flow estimate reduced to 0.22ml/s @10:08:43.13 Waiting up to 9 seconds for vacuum to reduce from 26.3 to 18.0psi @10:08:43.83 Relieved excess vacuum in 2.5 seconds @10:08:43.85 SamplePump.seek 1000ml,58:12 @10:08:50.41 Flow estimate reduced to 0.17ml/s @10:08:50.42 Intake.close @10:08:50.48 Exhaust.close @10:08:50.64 Toroid.reconfigure :hold @10:08:50.71 Toroid.seek :bypass @10:08:52.33 Toroid.reconfigure :default @10:08:52.40 Toroid.seek :clear @10:08:54.02 Cartridge::Sampler::Clogged in FILTERING -- Cartridge clogged @10:08:54.04 Pressure.coast @10:08:54.22 Sampled 309.4ml @10:08:56.35 -> Cmd.startProcessing @10:08:58.21 SPR.command \"read_sequences\" @10:08:58.88 SPR.command \"stats_on\" @10:08:58.92 SPR.command \"start 0 1\" @10:09:00.93 Begun log /var/log/esp/spr19aug2310h.spr @10:09:01.73 Handoff.select :waste @10:09:01.91 Archive.seek :empty @10:09:09.09 Syringe tare is 20% of full scale @10:09:19.64 PinPort.seek :cartridge @10:09:24.21 Lysis1.seek 1350ul @10:09:26.73 Lysis2.seek 1700ul @10:09:29.83 Plunge.seek :reagent @10:09:30.67 Evacuating puck with filter bubble point of 50psi @10:09:30.68 PinPort.seek :cartridge @10:09:30.76 Handoff.select :waste @10:09:41.43 Air pumping 1 strokes to reach 8psi @10:09:41.45 Air.reconfigure :gulp @10:09:41.52 Air.seek :tVent @10:09:43.31 0.8psi after gulp @10:09:43.32 Air stroke #1 of 1 @10:09:43.34 Air.reconfigure :pressurize @10:09:43.42 Air.seek :pressurized @10:09:56.25 0.4psi after pressurize @10:09:56.26 Air.reconfigure :compress @10:09:56.34 Air.seek :evac @10:09:59.03 1.3psi after compress @10:10:12.95 0.4psi after compress (stable) @10:10:13.45 at 0.4psi Opened to waste @10:10:13.46 Handoff.select :blocked @10:10:13.64 Air pumping 10 strokes to reach 50psi @10:10:13.66 Air.reconfigure :gulp @10:10:13.73 Air.seek :tVent @10:10:23.63 10.1psi after gulp @10:10:23.64 Air stroke #1 of 10 @10:10:23.67 Air.reconfigure :pressurize @10:10:23.75 Air.seek :pressurized @10:10:36.58 13.2psi after pressurize @10:10:36.59 Air.reconfigure :compress @10:10:36.67 Air.seek :evac @10:10:39.35 15.3psi after compress @10:11:08.21 34.2psi after compress (stable) @10:11:08.23 Air.reconfigure :gulp @10:11:08.31 Air.seek :tVent @10:11:18.19 35.2psi after gulp @10:11:18.20 Air stroke #2 of 10 @10:11:18.22 Air.reconfigure :pressurize @10:11:18.30 Air.seek :pressurized @10:11:31.13 33.8psi after pressurize @10:11:31.14 Air.reconfigure :compress @10:11:31.23 Air.seek :evac @10:11:33.89 33.9psi after compress @10:11:58.34 48.6psi after compress (stable) @10:11:58.36 Air.reconfigure :gulp @10:11:58.43 Air.seek :tVent @10:12:02.52 Reached 50.0 of 50.0psi after pumping 3115ul (2.00 strokes) @10:12:02.53 Handoff.select :waste @10:12:20.25 delay 30 seconds @10:12:50.27 Handoff.select :blocked @10:13:18.03 Handoff.select :waste @10:13:18.15 PSI at @3.64psi at evacEnd @10:13:18.16 Handoff.select :blocked @10:13:18.28 Air.seek :tVent @10:13:31.46 Stable @3.1psi after Handoff blocked @10:13:31.55 Air pumping 10 strokes to reach 33psi Air stroke #1 of 10 @10:13:31.57 Air.reconfigure :pressurize @10:13:31.65 Air.seek :pressurized @10:13:44.49 3.7psi after pressurize @10:13:44.50 Air.reconfigure :compress @10:13:44.59 Air.seek :evac @10:13:47.26 4.0psi after compress @10:14:28.68 15.2psi after compress (stable) @10:14:28.69 Air.reconfigure :gulp @10:14:28.77 Air.seek :tVent @10:14:38.66 16.3psi after gulp @10:14:38.67 Air stroke #2 of 10 @10:14:38.69 Air.reconfigure :pressurize @10:14:38.77 Air.seek :pressurized @10:14:51.61 16.6psi after pressurize @10:14:51.62 Air.reconfigure :compress @10:14:51.70 Air.seek :evac @10:14:54.36 16.6psi after compress @10:15:25.41 28.0psi after compress (stable) @10:15:25.42 Air.reconfigure :gulp @10:15:25.50 Air.seek :tVent @10:15:35.78 29.2psi after gulp @10:15:35.79 Air stroke #3 of 10 @10:15:35.81 Air.reconfigure :pressurize @10:15:35.89 Air.seek :pressurized @10:15:48.72 29.0psi after pressurize @10:15:48.74 Air.reconfigure :compress @10:15:48.82 Air.seek :evac @10:15:51.49 28.8psi after compress @10:15:55.38 Reached 33.8 of 33.1psi after pumping 6230ul (4.00 strokes) @10:15:55.39 Handoff.select :waste @10:16:15.45 delay 30 seconds @10:16:45.47 Handoff.select :blocked @10:17:10.47 Handoff.select :waste @10:17:10.59 PSI at @1.52psi at evacEnd @10:17:10.60 Air.reconfigure :default @10:17:10.72 Air.seek :fVent @10:17:12.15 delay 5 seconds @10:17:17.18 Seawater evacuated, Presure above/below filter released. Lysis begins @10:17:17.25 Lysis1.reconfigure :slow @10:17:17.32 Lysis1.seek 1050ul @10:17:47.32 delay 5 seconds @10:17:52.34 Handoff.select :blocked @10:17:52.50 Lysis1.seek 450ul @10:18:52.41 delay 3 seconds @10:18:55.87 Air.reconfigure to mix into 1.37806 parts Lysis1 @10:18:56.25 Air.seek :evac @10:18:56.30 Lysis1.seek 300ul @10:19:11.38 Air.reconfigure :default @10:19:11.44 Air.seek :full @10:19:25.65 Lysis1.seek :empty @10:19:55.73 Lysis Delivered. Syringe pressure @32.5psi @10:19:55.79 PuckHeater.seek 84.1C @10:20:35.87 PuckHeater.hold 15:00,84.1C @10:35:32.57 Lysis complete. Syringe pressure @39.5psi @10:35:32.58 Handoff.select :blocked @10:35:32.68 Lysis1.reconfigure :halfSpeed @10:35:32.75 Lysis1.seek 200ul @10:35:36.52 delay 1 second @10:35:37.54 Lysis1.seek :empty @10:35:41.36 Initial AirS pressure @40.3psi @10:35:41.42 Lysis1.reconfigure :extract @10:35:41.49 Lysis1.seek 900ul,10:00 @10:35:42.72 Air pumping 10 strokes to reach 21psi @10:35:42.73 Air stroke #1 of 10 @10:35:42.75 Air.reconfigure :pressurize @10:35:42.83 Air.seek :pressurized @10:35:55.65 16.2psi after pressurize @10:35:55.66 Air.reconfigure :compress @10:35:55.74 Air.seek :evac @10:35:58.41 16.8psi after compress @10:36:12.61 15.5psi after compress (stable) @10:36:12.63 Air.reconfigure :gulp @10:36:12.71 Air.seek :tVent @10:36:22.59 15.8psi after gulp @10:36:22.60 Air stroke #2 of 10 @10:36:22.62 Air.reconfigure :pressurize @10:36:22.70 Air.seek :pressurized @10:36:35.53 15.7psi after pressurize @10:36:35.56 Air.reconfigure :compress @10:36:35.64 Air.seek :evac @10:36:38.30 16.6psi after compress @10:36:52.21 15.7psi after compress (stable) @10:36:52.23 Air.reconfigure :gulp @10:36:52.30 Air.seek :tVent @10:36:58.82 Air.reconfigure :default @10:36:58.88 Air.hold @10:36:59.63 Lysis1 at 900ul @15.6psi @10:36:59.65 Lysis1.reconfigure :default @10:36:59.72 Lysis1.seek 925ul @10:37:00.50 Lysis1 at 925ul, bottom @13.5psi after recovery @10:37:01.61 Lysis1 at 925ul, bottom @15.1psi @10:37:01.63 Air.reconfigure :halfSpeed @10:37:01.71 Air.seek :fVent @10:37:23.52 Puck Top Vented, bottom @2.8psi @10:37:23.53 Handoff.select :waste @10:37:23.65 delay 5 seconds @10:37:28.67 delay 5 seconds @10:37:33.69 Handoff.select SPR @10:37:33.80 SPR.command \"start 2 14\" @10:37:34.73 delay 10 seconds @10:37:44.75 SPR.command \"start 2 0\" @10:37:47.98 Waiting up to 11:00 for SPR to enter state 1 @10:46:20.05 SPR.command \"hold_on\" @10:46:21.45 SPR Dilution 1 of 1 -- Running Experiment 2 @10:46:21.46 Lysis1.reconfigure :DAmix @10:46:21.58 Lysis2.reconfigure :DAmix @10:46:21.96 Lysis1.seek 675ul @10:46:21.99 Lysis2.seek 1450ul @10:46:57.38 Lysis1.seek 375ul @10:46:57.41 Lysis2.seek 1150ul @10:47:39.41 volL1 = 300.0 and volL2 = 300.0 @10:47:39.42 delay 15 seconds @10:47:54.44 SPR.command \"hold_off\" @10:47:57.10 Waiting up to 25:00 for SPR to enter state 7 @10:59:33.61 SPR Analysis has Completed @10:59:33.63 Handoff.select :waste @10:59:34.54 Ended log /var/log/esp/spr19aug2310h.spr @10:59:34.55 SPR.command \"stats_off\" @10:59:36.01 -> Cmd.stop @10:59:36.10 Handoff.select :close @10:59:36.23 Gate.power :heat,:OFF @10:59:36.25 Gate.power :cartridge,:OFF @10:59:36.33 Carousel.seek 26 @10:59:36.50 Plunge.seek :locked @10:59:37.34 PinPort.seek :clear @10:59:41.95 Archive.seek :clear @10:59:42.08 Air.reconfigure :default @10:59:42.22 Lysis1.reconfigure :default @10:59:42.32 Air.seek :clear @10:59:42.38 Lysis1.seek :clear @10:59:42.47 Lysis2.reconfigure :default @10:59:42.54 Lysis2.seek :clear @10:59:59.69 Archive.coast @10:59:59.74 Air.coast @10:59:59.79 Lysis1.coast @10:59:59.84 Lysis2.coast @10:59:59.89 Plunge.coast @10:59:59.94 SamplePump.coast @10:59:59.99 Toroid.coast @11:00:00.05 Carousel.coast @11:00:00.10 PinPort.coast @11:00:00.28 Gate.power :motor,:OFF @11:00:00.30 Gate.power :core,:OFF @11:00:00.32 Gate.power :analytic1,:OFF @11:00:00.34 Gate.power :analytic2,:OFF @11:00:00.36 Gate.power :analytic3,:OFF @11:00:00.38 Gate.power :main,:OFF @11:00:00.40 Safely stopped and ready to power off ##-- file closed 2019-08-23T17:44:21.534Z ##-- file opened 2019-08-23T17:44:21.536Z @13:44:22.25 -> showStatus @13:44:24.42 -> Cmd.loadCartridge -4 @13:44:24.56 Gate.power :main,:ON,limit to 5000mA @13:44:24.57 Gate.power :analytic1,:ON,limit to 5000mA @13:44:24.59 Gate.power :analytic2,:ON,limit to 5000mA @13:44:24.62 Gate.power :analytic3,:ON,limit to 5000mA @13:44:24.75 Powering core bus @13:44:27.05 SPR Module 1, FW Rev. B, FPGA Rev. C @13:44:27.19 Archive.configure :default @13:44:27.31 Air.configure :default @13:44:27.41 Lysis1.configure :default @13:44:27.51 Lysis2.configure :default @13:44:27.63 Plunge.configure :default @13:44:27.75 SamplePump.configure :default @13:44:27.87 ExtraPump.configure :default @13:44:27.99 Toroid.configure :default @13:44:28.11 Carousel.configure :default @13:44:28.23 Pressure.configure :default @13:44:28.33 PinPort.configure :default @13:44:28.39 All elf controllers running firmware version 4.58 @13:44:28.41 Gate.power :motor,:ON,limit to 5000mA @13:44:28.63 Archive.reconfigure :default @13:44:28.85 Archive.home.jog 0 @13:44:29.02 Toroid.reconfigure :default @13:44:29.07 Plunge.reconfigure :default @13:44:29.10 Lysis1.reconfigure :default @13:44:29.18 Air.reconfigure :default @13:44:29.21 PinPort.reconfigure :default @13:44:29.26 Lysis2.reconfigure :default @13:44:29.48 Air.home.jog 0 @13:44:29.53 Lysis1.home.jog 0 @13:44:29.59 Toroid.home.jog 0 @13:44:29.65 PinPort.home.jog 0 @13:44:29.71 Lysis2.home.jog 0 @13:44:29.77 Plunge.home.jog 0 @13:44:30.06 Archive.reconfigure :homing @13:44:30.21 Archive.jog 1379 @13:44:30.39 Toroid.reconfigure :homing @13:44:30.41 Plunge.reconfigure :homing @13:44:30.44 Air.reconfigure :homing @13:44:30.49 PinPort.reconfigure :homing @13:44:30.52 Lysis1.reconfigure :homing @13:44:30.56 Lysis2.reconfigure :homing @13:44:30.79 Lysis2.jog 1428 @13:44:30.84 Air.jog 1409 @13:44:30.90 Plunge.jog 1539 @13:44:30.96 PinPort.jog -108 @13:44:31.01 Lysis1.jog 1396 @13:44:31.07 Toroid.jog 618 @13:44:31.18 PinPort.setRawPosition! 0 @13:44:31.23 PinPort.seek :home @13:44:31.32 PinPort.reconfigure :default @13:44:31.40 Archive.setRawPosition! 50 @13:44:31.44 Archive.seek :home @13:44:31.72 Archive.reconfigure :default @13:44:31.95 Lysis2.setRawPosition! 50 @13:44:32.00 Lysis2.seek :home @13:44:32.11 Air.setRawPosition! 50 @13:44:32.16 Air.seek :home @13:44:32.25 Lysis1.setRawPosition! 50 @13:44:32.27 Plunge.setRawPosition! 50 @13:44:32.36 Lysis1.seek :home @13:44:32.39 Plunge.seek :home @13:44:32.53 Air.reconfigure :default @13:44:32.55 Lysis2.reconfigure :default @13:44:32.73 Plunge.reconfigure :default @13:44:32.75 Lysis1.reconfigure :default @13:44:33.17 Toroid.setRawPosition! 0 @13:44:33.21 Toroid.seek :home @13:44:33.30 Toroid.reconfigure :default @13:44:33.43 Toroid.seek :clear @13:44:35.05 Carousel.reconfigure :default @13:44:35.12 Carousel.home.jog 0 @13:44:35.61 Carousel.seek 26 @13:44:36.11 Selecting Cartridge 27 @13:44:36.36 Carousel.seek 27 @13:44:36.84 Lysis1.seek :locked @13:44:40.97 Plunge.seek :locked @13:44:41.09 Air.seek :locked @13:44:45.22 Powering cartridge bus @13:44:47.35 Gate.setIR 1750,5000,0,6 @13:44:47.47 Gate.setIR 0,5000,0,6 @13:44:47.51 Loaded Archive Cartridge @13:44:47.52 Gate.power :cartridge,:OFF @13:45:02.88 -> Cmd.startFiltering @13:45:03.10 Duration of filtering limited to 2:05:00 @13:45:03.36 Priming sample loop w/100ml, bypass w/10ml @13:45:03.37 SamplePump.setPosition! 0ml @13:45:03.42 Bypass.open @13:45:04.91 Intake.open @13:45:05.73 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @13:45:08.57 Vacuum tare is 52% of full scale @13:45:08.70 Pressure.reconfigure :default @13:45:08.76 Pressure.hold @13:45:08.92 SamplePump.reconfigure :prime @13:45:08.99 SamplePump.seek 10ml,1:21 @13:45:17.94 Pressure.coast @13:45:17.99 SamplePump.setPosition! 0ml @13:45:18.04 Exhaust.open @13:45:19.48 Bypass.close @13:45:21.02 Pressure.reconfigure :default @13:45:21.08 Pressure.hold @13:45:21.30 SamplePump.reconfigure :prime @13:45:21.38 SamplePump.seek 100ml,8:51 @13:47:16.79 Pressure.coast @13:47:16.85 Bypass.open @13:47:17.58 Intake.close @13:47:18.39 Toroid.reconfigure :hold @13:47:18.45 Toroid.seek :crack @13:47:19.25 Toroid.reconfigure :default @13:47:19.31 Toroid.seek :clear @13:47:20.87 Toroid.reconfigure :hold @13:47:20.94 Toroid.seek :cartridge @13:47:22.75 Toroid.reconfigure :default @13:47:22.81 Toroid.seek :clear @13:47:24.78 Pressurizing cartridge to 26psi above 12.3psia @13:47:24.79 SamplePump.setPosition! 0ml @13:47:24.84 Intake.open @13:47:25.58 Bypass.close @13:47:26.31 Exhaust.close @13:47:27.13 Pressure.reconfigure :default @13:47:27.19 Pressure.hold @13:47:27.35 SamplePump.reconfigure :charge @13:47:27.42 SamplePump.seek 2.3ml,42 seconds @13:47:35.39 Pressure.coast @13:47:35.44 Intake.close @13:47:36.27 Pressurized cartridge with 0.295ml to 26.3psi @13:47:36.28 Isolated @34.9psia (22.6psi) @13:47:36.29 Checking for cartridge leaks from 34.9psia @13:47:36.32 Waiting up to 20 seconds for cartridge pressure to stabilize +/-0.75psi @13:47:41.35 Cartridge pressure fell 1% to 34.7psia @13:47:41.43 Sampling 1000.0ml @13:47:41.44 SamplePump.setPosition! 0ml @13:47:41.49 Exhaust.open @13:47:42.19 Intake.open @13:47:43.03 Pressure.reconfigure :default @13:47:43.09 Pressure.hold @13:47:43.30 SamplePump.reconfigure :sample @13:47:43.37 SamplePump.seek 1000ml,1:23:53 @13:47:46.07 Cartridge 27 sampling 1/1000ml at 0.37ml/s with 22.5psi vacuum @13:48:46.07 Cartridge 27 sampling 23/1000ml at 0.33ml/s with 26.4psi vacuum @13:49:46.07 Cartridge 27 sampling 41/1000ml at 0.31ml/s with 23.6psi vacuum @13:50:46.07 Cartridge 27 sampling 56/1000ml at 0.20ml/s with 28.1psi vacuum @13:51:04.09 Flow averaged 0.31ml/s over 3:13 @13:51:04.12 Waiting up to 15 seconds for vacuum to reduce from 28.7 to 18.0psi @13:51:05.12 Relieved excess vacuum in 9 seconds @13:51:05.14 SamplePump.seek 1000ml,1:18:56 @13:51:10.10 Flow estimate reduced to 0.25ml/s @13:51:10.14 Waiting up to 9 seconds for vacuum to reduce from 26.4 to 18.0psi @13:51:11.51 Relieved excess vacuum in 3.3 seconds @13:51:11.54 SamplePump.seek 1000ml,1:18:51 @13:51:16.36 Flow estimate reduced to 0.20ml/s @13:51:16.38 Intake.close @13:51:16.44 Exhaust.close @13:51:16.60 Toroid.reconfigure :hold @13:51:16.67 Toroid.seek :bypass @13:51:18.29 Toroid.reconfigure :default @13:51:18.36 Toroid.seek :clear @13:51:19.98 Cartridge::Sampler::Clogged in FILTERING -- Cartridge clogged @13:51:20.00 Pressure.coast @13:51:20.18 Sampled 61.2ml @13:51:22.44 -> Cmd.startProcessing @13:51:22.68 Plunge.seek :reagent @13:51:23.55 Sample loop closed. Ready to Deliver Reagents @13:51:23.56 Archive.seek :sealed @13:51:27.83 Archive.seek :evac @13:51:41.76 delay 1:00 @13:52:41.79 Archive.seek :clear @13:52:59.50 RNAlater soak for 10:00 @14:02:59.52 Archive.seek :tVent @14:03:02.10 delay 1 second @14:03:03.12 Archive.seek :evac @14:03:18.74 delay 10 seconds @14:03:28.77 Archive.seek :tVent @14:03:44.39 delay 1 second @14:03:45.41 Archive.seek :evac @14:04:01.03 delay 10 seconds @14:04:11.06 Sample preserved and evacuated @14:04:12.02 -> Cmd.stop @14:04:12.16 Carousel.seek 27 @14:04:12.33 Plunge.seek :locked @14:04:13.17 PinPort.seek :clear @14:04:13.31 Archive.seek :clear @14:04:13.44 Air.seek :clear @14:04:13.57 Lysis1.seek :clear @14:04:31.07 Archive.coast @14:04:31.12 Air.coast @14:04:31.17 Lysis1.coast @14:04:31.23 Lysis2.coast @14:04:31.27 Plunge.coast @14:04:31.33 SamplePump.coast @14:04:31.38 Toroid.coast @14:04:31.43 Carousel.coast @14:04:31.47 PinPort.coast @14:04:31.65 Gate.power :motor,:OFF @14:04:31.67 Gate.power :core,:OFF @14:04:31.69 Gate.power :analytic1,:OFF @14:04:31.71 Gate.power :analytic2,:OFF @14:04:31.73 Gate.power :analytic3,:OFF @14:04:31.75 Gate.power :main,:OFF @14:04:31.77 Safely stopped and ready to power off ##-- file closed 2019-08-23T18:20:20.582Z ##-- file opened 2019-08-23T18:20:20.583Z @14:20:21.31 -> showStatus @14:20:23.35 -> Cmd.loadCartridge -15 @14:20:23.50 Gate.power :main,:ON,limit to 5000mA @14:20:23.51 Gate.power :analytic1,:ON,limit to 5000mA @14:20:23.54 Gate.power :analytic2,:ON,limit to 5000mA @14:20:23.56 Gate.power :analytic3,:ON,limit to 5000mA @14:20:23.69 Powering core bus @14:20:25.97 SPR Module 1, FW Rev. B, FPGA Rev. C @14:20:26.10 Archive.configure :default @14:20:26.23 Air.configure :default @14:20:26.34 Lysis1.configure :default @14:20:26.44 Lysis2.configure :default @14:20:26.56 Plunge.configure :default @14:20:26.68 SamplePump.configure :default @14:20:26.80 ExtraPump.configure :default @14:20:26.92 Toroid.configure :default @14:20:27.08 Carousel.configure :default @14:20:27.19 Pressure.configure :default @14:20:27.29 PinPort.configure :default @14:20:27.35 All elf controllers running firmware version 4.58 @14:20:27.38 Gate.power :motor,:ON,limit to 5000mA @14:20:27.54 Archive.reconfigure :default @14:20:27.81 Archive.home.jog 0 @14:20:27.94 Toroid.reconfigure :default @14:20:28.03 Plunge.reconfigure :default @14:20:28.07 Lysis2.reconfigure :default @14:20:28.10 Air.reconfigure :default @14:20:28.13 PinPort.reconfigure :default @14:20:28.17 Lysis1.reconfigure :default @14:20:28.41 Air.home.jog 0 @14:20:28.46 Lysis2.home.jog 0 @14:20:28.52 Plunge.home.jog 0 @14:20:28.57 PinPort.home.jog 0 @14:20:28.63 Toroid.home.jog 0 @14:20:28.69 Lysis1.home.jog 0 @14:20:28.95 Archive.reconfigure :homing @14:20:29.13 Archive.jog 1378 @14:20:29.31 Toroid.reconfigure :homing @14:20:29.33 Plunge.reconfigure :homing @14:20:29.36 Air.reconfigure :homing @14:20:29.41 PinPort.reconfigure :homing @14:20:29.44 Lysis1.reconfigure :homing @14:20:29.48 Lysis2.reconfigure :homing @14:20:29.71 Lysis2.jog 1427 @14:20:29.77 Plunge.jog 1542 @14:20:29.83 Toroid.jog 624 @14:20:29.88 Air.jog 1400 @14:20:29.94 PinPort.jog -107 @14:20:30.00 Lysis1.jog 1399 @14:20:30.18 PinPort.setRawPosition! 0 @14:20:30.22 PinPort.seek :home @14:20:30.32 PinPort.reconfigure :default @14:20:30.34 Archive.setRawPosition! 50 @14:20:30.41 Archive.seek :home @14:20:30.72 Archive.reconfigure :default @14:20:30.88 Lysis2.setRawPosition! 50 @14:20:30.92 Lysis2.seek :home @14:20:31.02 Plunge.setRawPosition! 50 @14:20:31.07 Plunge.seek :home @14:20:31.17 Air.setRawPosition! 50 @14:20:31.22 Air.seek :home @14:20:31.31 Lysis2.reconfigure :default @14:20:31.35 Lysis1.setRawPosition! 50 @14:20:31.41 Lysis1.seek :home @14:20:31.54 Plunge.reconfigure :default @14:20:31.56 Air.reconfigure :default @14:20:31.72 Lysis1.reconfigure :default @14:20:31.94 Toroid.setRawPosition! 0 @14:20:31.98 Toroid.seek :home @14:20:32.07 Toroid.reconfigure :default @14:20:32.21 Toroid.seek :clear @14:20:33.84 Carousel.reconfigure :default @14:20:33.91 Carousel.home.jog 0 @14:20:34.41 Carousel.seek 27 @14:20:34.91 Selecting Cartridge 24 @14:20:35.16 Carousel.seek 24 @14:20:36.05 Lysis1.seek :locked @14:20:40.18 Plunge.seek :locked @14:20:40.30 Air.seek :locked @14:20:44.43 Powering cartridge bus @14:20:46.56 Gate.setIR 1750,5000,0,6 @14:20:46.68 Gate.setIR 0,5000,0,6 @14:20:46.73 Loaded Lyse-n-Go Cartridge @14:20:46.75 PuckHeater.configure HeatConfig @14:20:46.80 Gate.power :heat,:ON,limit to 5000mA @14:21:02.48 -> Cmd.startFiltering @14:21:02.70 Duration of filtering limited to 2:05:00 @14:21:02.97 Priming sample loop w/100ml, bypass w/10ml @14:21:02.98 SamplePump.setPosition! 0ml @14:21:03.03 Bypass.open @14:21:04.50 Intake.open @14:21:05.31 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @14:21:08.15 Vacuum tare is 52% of full scale @14:21:08.28 Pressure.reconfigure :default @14:21:08.34 Pressure.hold @14:21:08.50 SamplePump.reconfigure :prime @14:21:08.57 SamplePump.seek 10ml,1:21 @14:21:17.52 Pressure.coast @14:21:17.57 SamplePump.setPosition! 0ml @14:21:17.62 Exhaust.open @14:21:19.06 Bypass.close @14:21:20.59 Pressure.reconfigure :default @14:21:20.65 Pressure.hold @14:21:20.87 SamplePump.reconfigure :prime @14:21:20.94 SamplePump.seek 100ml,8:51 @14:23:16.48 Pressure.coast @14:23:16.54 Bypass.open @14:23:17.23 Intake.close @14:23:18.09 Toroid.reconfigure :hold @14:23:18.15 Toroid.seek :crack @14:23:18.95 Toroid.reconfigure :default @14:23:19.01 Toroid.seek :clear @14:23:20.57 Toroid.reconfigure :hold @14:23:20.64 Toroid.seek :cartridge @14:23:22.46 Toroid.reconfigure :default @14:23:22.52 Toroid.seek :clear @14:23:24.50 Pressurizing cartridge to 26psi above 12.3psia @14:23:24.51 SamplePump.setPosition! 0ml @14:23:24.55 Intake.open @14:23:25.30 Bypass.close @14:23:26.00 Exhaust.close @14:23:26.81 Pressure.reconfigure :default @14:23:26.86 Pressure.hold @14:23:27.03 SamplePump.reconfigure :charge @14:23:27.11 SamplePump.seek 2.3ml,42 seconds @14:23:38.56 Pressure.coast @14:23:38.62 Intake.close @14:23:39.42 Pressurized cartridge with 0.616ml to 26.4psi @14:23:39.43 Isolated @35.2psia (22.9psi) @14:23:39.44 Checking for cartridge leaks from 35.2psia @14:23:39.48 Waiting up to 20 seconds for cartridge pressure to stabilize +/-0.75psi @14:23:44.60 Sampling 1000.0ml @14:23:44.62 SamplePump.setPosition! 0ml @14:23:44.67 Exhaust.open @14:23:45.37 Intake.open @14:23:46.21 Pressure.reconfigure :default @14:23:46.26 Pressure.hold @14:23:46.48 SamplePump.reconfigure :sample @14:23:46.55 SamplePump.seek 1000ml,1:23:53 @14:23:49.25 Cartridge 24 sampling 1/1000ml at 0.54ml/s with 24.3psi vacuum @14:24:49.25 Cartridge 24 sampling 33/1000ml at 0.51ml/s with 24.6psi vacuum @14:25:49.24 Cartridge 24 sampling 63/1000ml at 0.47ml/s with 23.7psi vacuum @14:26:49.25 Cartridge 24 sampling 91/1000ml at 0.42ml/s with 26.7psi vacuum @14:27:49.25 Cartridge 24 sampling 115/1000ml at 0.41ml/s with 23.2psi vacuum @14:28:49.25 Cartridge 24 sampling 138/1000ml at 0.34ml/s with 26.5psi vacuum @14:29:49.25 Cartridge 24 sampling 158/1000ml at 0.31ml/s with 26.7psi vacuum @14:30:49.24 Cartridge 24 sampling 176/1000ml at 0.30ml/s with 23.5psi vacuum @14:31:49.25 Cartridge 24 sampling 191/1000ml at 0.22ml/s with 24.9psi vacuum @14:32:49.63 Cartridge 24 sampling 205/1000ml at 0.22ml/s with 24.6psi vacuum @14:33:49.25 Cartridge 24 sampling 218/1000ml at 0.20ml/s with 26.7psi vacuum @14:34:49.25 Cartridge 24 sampling 231/1000ml at 0.20ml/s with 25.2psi vacuum @14:35:48.32 Flow averaged 0.34ml/s over 12:01 @14:35:48.35 Waiting up to 11 seconds for vacuum to reduce from 27.0 to 18.0psi @14:35:49.05 Relieved excess vacuum in 2.3 seconds @14:35:49.07 SamplePump.seek 1000ml,1:03:40 @14:35:49.24 Cartridge 24 sampling 242/1000ml at 0.02ml/s with 5.9psi vacuum @14:35:59.78 Flow estimate reduced to 0.27ml/s @14:35:59.82 Waiting up to 16 seconds for vacuum to reduce from 29.2 to 18.0psi @14:36:00.82 Relieved excess vacuum in 8.7 seconds @14:36:00.84 SamplePump.seek 1000ml,1:03:30 @14:36:02.57 Flow estimate reduced to 0.22ml/s @14:36:02.60 Waiting up to 17 seconds for vacuum to reduce from 29.6 to 18.0psi @14:36:03.60 Relieved excess vacuum in 2.6 seconds @14:36:03.62 SamplePump.seek 1000ml,1:03:28 @14:36:05.47 Flow estimate reduced to 0.17ml/s @14:36:05.50 Intake.close @14:36:05.55 Exhaust.close @14:36:05.71 Toroid.reconfigure :hold @14:36:05.78 Toroid.seek :bypass @14:36:07.40 Toroid.reconfigure :default @14:36:07.47 Toroid.seek :clear @14:36:09.09 Cartridge::Sampler::Clogged in FILTERING -- Cartridge clogged @14:36:09.11 Pressure.coast @14:36:09.29 Sampled 245.1ml @14:36:11.19 -> Cmd.startProcessing @14:36:13.05 SPR.command \"read_sequences\" @14:36:13.59 SPR.command \"stats_on\" @14:36:13.63 SPR.command \"start 0 1\" @14:36:15.64 Begun log /var/log/esp/spr19aug2314h.spr @14:36:16.45 Handoff.select :waste @14:36:16.63 Archive.seek :empty @14:36:23.81 Syringe tare is 20% of full scale @14:36:34.36 PinPort.seek :cartridge @14:36:38.92 Lysis1.seek 1350ul @14:36:41.39 Lysis2.seek 1700ul @14:36:44.49 Plunge.seek :reagent @14:36:45.33 Evacuating puck with filter bubble point of 50psi @14:36:45.34 PinPort.seek :cartridge @14:36:45.42 Handoff.select :waste @14:36:52.76 Air pumping 1 strokes to reach 8psi @14:36:52.78 Air.reconfigure :gulp @14:36:52.87 Air.seek :tVent @14:36:54.66 0.1psi after gulp @14:36:54.67 Air stroke #1 of 1 @14:36:54.69 Air.reconfigure :pressurize @14:36:54.79 Air.seek :pressurized @14:37:07.62 -0.0psi after pressurize @14:37:07.63 Air.reconfigure :compress @14:37:07.70 Air.seek :evac @14:37:10.37 0.3psi after compress @14:37:24.26 0.1psi after compress (stable) @14:37:24.38 at -0.0psi Opened to waste @14:37:24.39 Handoff.select :blocked @14:37:24.58 Air pumping 10 strokes to reach 50psi @14:37:24.59 Air.reconfigure :gulp @14:37:24.67 Air.seek :tVent @14:37:34.94 6.2psi after gulp @14:37:34.95 Air stroke #1 of 10 @14:37:34.97 Air.reconfigure :pressurize @14:37:35.04 Air.seek :pressurized @14:37:47.88 9.5psi after pressurize @14:37:47.89 Air.reconfigure :compress @14:37:47.97 Air.seek :evac @14:37:50.64 11.2psi after compress @14:38:32.22 35.7psi after compress (stable) @14:38:32.24 Air.reconfigure :gulp @14:38:32.32 Air.seek :tVent @14:38:42.22 38.1psi after gulp @14:38:42.23 Air stroke #2 of 10 @14:38:42.25 Air.reconfigure :pressurize @14:38:42.36 Air.seek :pressurized @14:38:55.23 35.9psi after pressurize @14:38:55.24 Air.reconfigure :compress @14:38:55.32 Air.seek :evac @14:38:57.98 34.2psi after compress @14:39:18.99 Reached 50.1 of 50.0psi after pumping 4672ul (3.00 strokes) @14:39:19.00 Handoff.select :waste @14:39:40.72 delay 30 seconds @14:40:10.74 Handoff.select :blocked @14:40:43.45 Handoff.select :waste @14:40:43.57 PSI at @4.74psi at evacEnd @14:40:43.58 Handoff.select :blocked @14:40:43.71 Air.reconfigure :gulp @14:40:43.82 Air.seek :tVent @14:41:00.88 Stable @3.7psi after Handoff blocked @14:41:00.96 Air pumping 10 strokes to reach 34psi @14:41:00.98 Air stroke #1 of 10 @14:41:01.00 Air.reconfigure :pressurize @14:41:01.08 Air.seek :pressurized @14:41:13.92 4.4psi after pressurize @14:41:13.94 Air.reconfigure :compress @14:41:14.03 Air.seek :evac @14:41:17.10 4.8psi after compress @14:42:06.53 18.3psi after compress (stable) @14:42:06.55 Air.reconfigure :gulp @14:42:06.62 Air.seek :tVent @14:42:16.52 18.8psi after gulp @14:42:16.53 Air stroke #2 of 10 @14:42:16.55 Air.reconfigure :pressurize @14:42:16.63 Air.seek :pressurized @14:42:29.46 18.7psi after pressurize @14:42:29.47 Air.reconfigure :compress @14:42:29.56 Air.seek :evac @14:42:32.24 20.8psi after compress @14:43:04.23 29.4psi after compress (stable) @14:43:04.25 Air.reconfigure :gulp @14:43:04.33 Air.seek :tVent @14:43:14.21 30.6psi after gulp @14:43:14.22 Air stroke #3 of 10 @14:43:14.24 Air.reconfigure :pressurize @14:43:14.32 Air.seek :pressurized @14:43:27.15 30.0psi after pressurize @14:43:27.16 Air.reconfigure :compress @14:43:27.26 Air.seek :evac @14:43:29.94 29.8psi after compress @14:43:35.36 Reached 33.7 of 33.7psi after pumping 6230ul (4.00 strokes) @14:43:35.37 Handoff.select :waste @14:43:48.23 delay 30 seconds @14:44:18.26 Handoff.select :blocked @14:44:43.61 Handoff.select :waste @14:44:43.73 PSI at @1.15psi at evacEnd @14:44:43.74 Air.reconfigure :default @14:44:43.86 Air.seek :fVent @14:44:45.32 delay 5 seconds @14:44:50.34 Seawater evacuated, Presure above/below filter released. Lysis begins @14:44:50.41 Lysis1.reconfigure :slow @14:44:50.49 Lysis1.seek 1050ul @14:45:20.52 delay 5 seconds @14:45:25.54 Handoff.select :blocked @14:45:25.70 Lysis1.seek 450ul @14:46:25.63 delay 3 seconds @14:46:28.70 Air.reconfigure to mix into 1.37806 parts Lysis1 @14:46:29.13 Air.seek :evac @14:46:29.18 Lysis1.seek 300ul @14:46:44.28 Air.reconfigure :default @14:46:44.35 Air.seek :full @14:46:58.56 Lysis1.seek :empty @14:47:28.65 Lysis Delivered. Syringe pressure @36.9psi @14:47:28.69 PuckHeater.seek 84C @14:48:18.22 PuckHeater.hold 15:00,84C @15:03:18.33 Lysis complete. Syringe pressure @41.4psi @15:03:18.35 Handoff.select :blocked @15:03:18.45 Lysis1.reconfigure :halfSpeed @15:03:18.51 Lysis1.seek 200ul @15:03:22.28 delay 1 second @15:03:23.30 Lysis1.seek :empty @15:03:27.10 Initial AirS pressure @41.3psi @15:03:27.17 Lysis1.reconfigure :extract @15:03:27.27 Lysis1.seek 900ul,10:00 @15:03:28.41 Air pumping 10 strokes to reach 21psi @15:03:28.42 Air stroke #1 of 10 @15:03:28.45 Air.reconfigure :pressurize @15:03:28.54 Air.seek :pressurized @15:03:41.37 15.2psi after pressurize @15:03:41.38 Air.reconfigure :compress @15:03:41.46 Air.seek :evac @15:03:44.12 17.9psi after compress @15:03:58.40 15.4psi after compress (stable) @15:03:58.42 Air.reconfigure :gulp @15:03:58.49 Air.seek :tVent @15:04:08.37 16.1psi after gulp @15:04:08.38 Air stroke #2 of 10 @15:04:08.40 Air.reconfigure :pressurize @15:04:08.47 Air.seek :pressurized @15:04:21.29 15.7psi after pressurize @15:04:21.30 Air.reconfigure :compress @15:04:21.38 Air.seek :evac @15:04:24.05 16.0psi after compress @15:04:38.05 15.6psi after compress (stable) @15:04:38.06 Air.reconfigure :gulp @15:04:38.14 Air.seek :tVent @15:04:48.02 15.8psi after gulp @15:04:48.03 Air stroke #3 of 10 @15:04:48.05 Air.reconfigure :pressurize @15:04:48.13 Air.seek :pressurized @15:05:00.95 14.3psi after pressurize @15:05:00.96 Air.reconfigure :compress @15:05:01.04 Air.seek :evac @15:05:03.69 16.2psi after compress @15:05:08.09 Air.reconfigure :default @15:05:08.15 Air.hold @15:05:08.32 Lysis1 at 900ul @18.1psi @15:05:08.33 Lysis1.reconfigure :default @15:05:08.41 Lysis1.seek 925ul @15:05:09.18 Lysis1 at 925ul, bottom @16.5psi after recovery @15:05:10.29 Lysis1 at 925ul, bottom @21.0psi @15:05:10.31 Air.reconfigure :halfSpeed @15:05:10.38 Air.seek :fVent @15:05:12.63 Puck Top Vented, bottom @1.2psi @15:05:12.64 Handoff.select :waste @15:05:12.76 delay 5 seconds @15:05:17.78 delay 5 seconds @15:05:22.80 Handoff.select SPR @15:05:22.93 SPR.command \"start 2 14\" @15:05:24.44 delay 10 seconds @15:05:34.46 SPR.command \"start 2 0\" @15:05:37.69 Waiting up to 11:00 for SPR to enter state 1 @15:14:09.76 SPR.command \"hold_on\" @15:14:11.16 SPR Dilution 1 of 1 -- Running Experiment 2 @15:14:11.17 Lysis2.reconfigure :DAmix @15:14:11.29 Lysis1.reconfigure :DAmix @15:14:11.69 Lysis2.seek 1450ul @15:14:11.72 Lysis1.seek 675ul @15:14:47.11 Lysis2.seek 1150ul @15:14:47.15 Lysis1.seek 375ul @15:15:29.16 volL1 = 300.0 and volL2 = 300.0 @15:15:29.18 delay 15 seconds @15:15:44.22 SPR.command \"hold_off\" @15:15:46.80 Waiting up to 25:00 for SPR to enter state 7 @15:27:23.33 SPR Analysis has Completed @15:27:23.34 Handoff.select :waste @15:27:24.24 Ended log /var/log/esp/spr19aug2314h.spr @15:27:24.25 SPR.command \"stats_off\" @15:27:25.73 -> Cmd.stop @15:27:25.82 Handoff.select :close @15:27:25.95 Gate.power :heat,:OFF @15:27:25.97 Gate.power :cartridge,:OFF @15:27:26.05 Carousel.seek 24 @15:27:26.23 Plunge.seek :locked @15:27:27.07 PinPort.seek :clear @15:27:31.68 Archive.seek :clear @15:27:31.81 Air.reconfigure :default @15:27:31.95 Lysis1.reconfigure :default @15:27:32.06 Air.seek :clear @15:27:32.12 Lysis1.seek :clear @15:27:32.20 Lysis2.reconfigure :default @15:27:32.27 Lysis2.seek :clear @15:27:49.42 Archive.coast @15:27:49.47 Air.coast @15:27:49.52 Lysis1.coast @15:27:49.58 Lysis2.coast @15:27:49.62 Plunge.coast @15:27:49.67 SamplePump.coast @15:27:49.72 Toroid.coast @15:27:49.78 Carousel.coast @15:27:49.83 PinPort.coast @15:27:50.01 Gate.power :motor,:OFF @15:27:50.03 Gate.power :core,:OFF @15:27:50.05 Gate.power :analytic1,:OFF @15:27:50.07 Gate.power :analytic2,:OFF @15:27:50.09 Gate.power :analytic3,:OFF @15:27:50.11 Gate.power :main,:OFF @15:27:50.13 Safely stopped and ready to power off ##-- file closed 2019-08-23T22:16:30.332Z ##-- file opened 2019-08-23T22:16:30.334Z @18:16:30.47 -> showStatus @18:16:32.48 -> Cmd.loadCartridge -4 @18:16:32.62 Gate.power :main,:ON,limit to 5000mA @18:16:32.64 Gate.power :analytic1,:ON,limit to 5000mA @18:16:32.66 Gate.power :analytic2,:ON,limit to 5000mA @18:16:32.68 Gate.power :analytic3,:ON,limit to 5000mA @18:16:32.81 Powering core bus @18:16:35.16 SPR Module 1, FW Rev. B, FPGA Rev. C @18:16:35.30 Archive.configure :default @18:16:35.42 Air.configure :default @18:16:35.53 Lysis1.configure :default @18:16:35.63 Lysis2.configure :default @18:16:35.75 Plunge.configure :default @18:16:35.87 SamplePump.configure :default @18:16:35.99 ExtraPump.configure :default @18:16:36.11 Toroid.configure :default @18:16:36.23 Carousel.configure :default @18:16:36.35 Pressure.configure :default @18:16:36.45 PinPort.configure :default @18:16:36.50 All elf controllers running firmware version 4.58 @18:16:36.53 Gate.power :motor,:ON,limit to 5000mA @18:16:36.65 Archive.reconfigure :default @18:16:36.97 Archive.home.jog 0 @18:16:37.11 Toroid.reconfigure :default @18:16:37.18 Plunge.reconfigure :default @18:16:37.23 Lysis1.reconfigure :default @18:16:37.26 PinPort.reconfigure :default @18:16:37.32 Air.reconfigure :default @18:16:37.40 Lysis2.reconfigure :default @18:16:37.60 Lysis2.home.jog 0 @18:16:37.65 Lysis1.home.jog 0 @18:16:37.70 Plunge.home.jog 0 @18:16:37.76 Toroid.home.jog 0 @18:16:37.81 Air.home.jog 0 @18:16:37.87 PinPort.home.jog 0 @18:16:38.17 Archive.reconfigure :homing @18:16:38.38 Toroid.reconfigure :homing @18:16:38.42 Plunge.reconfigure :homing @18:16:38.45 Air.reconfigure :homing @18:16:38.49 Lysis1.reconfigure :homing @18:16:38.54 PinPort.reconfigure :homing @18:16:38.57 Lysis2.reconfigure :homing @18:16:38.78 Toroid.jog 622 @18:16:38.84 PinPort.jog -107 @18:16:38.89 Air.jog 1406 @18:16:38.95 Lysis1.jog 1398 @18:16:39.01 Plunge.jog 1539 @18:16:39.07 Archive.jog 1379 @18:16:39.13 Lysis2.jog 1423 @18:16:39.20 PinPort.setRawPosition! 0 @18:16:39.24 PinPort.seek :home @18:16:39.33 PinPort.reconfigure :default @18:16:40.05 Air.setRawPosition! 50 @18:16:40.10 Air.seek :home @18:16:40.18 Lysis1.setRawPosition! 50 @18:16:40.25 Lysis1.seek :home @18:16:40.34 Plunge.setRawPosition! 50 @18:16:40.37 Archive.setRawPosition! 50 @18:16:40.39 Lysis2.setRawPosition! 50 @18:16:40.48 Plunge.seek :home @18:16:40.55 Archive.seek :home @18:16:40.59 Lysis2.seek :home @18:16:40.75 Air.reconfigure :default @18:16:40.77 Lysis1.reconfigure :default @18:16:40.95 Toroid.setRawPosition! 0 @18:16:40.98 Plunge.reconfigure :default @18:16:41.01 Lysis2.reconfigure :default @18:16:41.04 Archive.reconfigure :default @18:16:41.16 Toroid.seek :home @18:16:41.31 Toroid.reconfigure :default @18:16:41.56 Toroid.seek :clear @18:16:43.18 Carousel.reconfigure :default @18:16:43.25 Carousel.home.jog 0 @18:16:44.07 Carousel.seek 24 @18:16:44.27 Selecting Cartridge 25 @18:16:44.51 Carousel.seek 25 @18:16:45.02 Lysis1.seek :locked @18:16:49.15 Plunge.seek :locked @18:16:49.27 Air.seek :locked @18:16:53.40 Powering cartridge bus @18:16:55.53 Gate.setIR 1750,5000,0,6 @18:16:55.65 Gate.setIR 0,5000,0,6 @18:16:55.69 Loaded Archive Cartridge @18:16:55.70 Gate.power :cartridge,:OFF @18:17:11.22 -> Cmd.startFiltering @18:17:11.45 Duration of filtering limited to 2:05:00 @18:17:11.71 Priming sample loop w/100ml, bypass w/10ml @18:17:11.72 SamplePump.setPosition! 0ml @18:17:11.76 Bypass.open @18:17:13.25 Intake.open @18:17:14.07 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @18:17:16.91 Vacuum tare is 52% of full scale @18:17:17.04 Pressure.reconfigure :default @18:17:17.10 Pressure.hold @18:17:17.26 SamplePump.reconfigure :prime @18:17:17.34 SamplePump.seek 10ml,1:21 @18:17:26.28 Pressure.coast @18:17:26.33 SamplePump.setPosition! 0ml @18:17:26.38 Exhaust.open @18:17:27.81 Bypass.close @18:17:29.39 Pressure.reconfigure :default @18:17:29.45 Pressure.hold @18:17:29.67 SamplePump.reconfigure :prime @18:17:29.75 SamplePump.seek 100ml,8:51 @18:19:25.42 Pressure.coast @18:19:25.48 Bypass.open @18:19:26.24 Intake.close @18:19:27.07 Toroid.reconfigure :hold @18:19:27.13 Toroid.seek :crack @18:19:27.93 Toroid.reconfigure :default @18:19:27.99 Toroid.seek :clear @18:19:29.55 Toroid.reconfigure :hold @18:19:29.62 Toroid.seek :cartridge @18:19:31.43 Toroid.reconfigure :default @18:19:31.49 Toroid.seek :clear @18:19:33.46 Pressurizing cartridge to 26psi above 13.0psia @18:19:33.47 SamplePump.setPosition! 0ml @18:19:33.52 Intake.open @18:19:34.23 Bypass.close @18:19:34.97 Exhaust.close @18:19:35.78 Pressure.reconfigure :default @18:19:35.83 Pressure.hold @18:19:36.00 SamplePump.reconfigure :charge @18:19:36.07 SamplePump.seek 2.3ml,42 seconds @18:19:44.25 Pressure.coast @18:19:44.31 Intake.close @18:19:45.12 Pressurized cartridge with 0.312ml to 26.2psi @18:19:45.13 Isolated @35.1psia (22.1psi) @18:19:45.14 Checking for cartridge leaks from 35.1psia @18:19:45.18 Waiting up to 20 seconds for cartridge pressure to stabilize +/-0.75psi @18:19:50.21 Cartridge pressure fell 1% to 34.8psia @18:19:50.29 Sampling 1000.0ml @18:19:50.30 SamplePump.setPosition! 0ml @18:19:50.35 Exhaust.open @18:19:51.06 Intake.open @18:19:51.95 Pressure.reconfigure :default @18:19:52.01 Pressure.hold @18:19:52.22 SamplePump.reconfigure :sample @18:19:52.29 SamplePump.seek 1000ml,1:23:53 @18:19:54.99 Cartridge 25 sampling 1/1000ml at 0.40ml/s with 20.6psi vacuum @18:20:54.99 Cartridge 25 sampling 24/1000ml at 0.34ml/s with 23.6psi vacuum @18:21:54.99 Cartridge 25 sampling 44/1000ml at 0.28ml/s with 22.1psi vacuum @18:22:54.99 Cartridge 25 sampling 61/1000ml at 0.23ml/s with 26.4psi vacuum @18:23:54.99 Cartridge 25 sampling 74/1000ml at 0.21ml/s with 24.6psi vacuum @18:24:18.21 Flow averaged 0.30ml/s over 4:23 @18:24:18.24 Waiting up to 12 seconds for vacuum to reduce from 27.8 to 18.0psi @18:24:19.23 Relieved excess vacuum in 4.1 seconds @18:24:19.26 SamplePump.seek 1000ml,1:17:19 @18:24:26.11 Flow estimate reduced to 0.24ml/s @18:24:26.13 Waiting up to 12 seconds for vacuum to reduce from 27.8 to 18.0psi @18:24:26.84 Relieved excess vacuum in 4.5 seconds @18:24:26.86 SamplePump.seek 1000ml,1:17:13 @18:24:36.41 Flow estimate reduced to 0.19ml/s @18:24:36.43 Intake.close @18:24:36.51 Exhaust.close @18:24:36.67 Toroid.reconfigure :hold @18:24:36.75 Toroid.seek :bypass @18:24:38.36 Toroid.reconfigure :default @18:24:38.43 Toroid.seek :clear @18:24:40.05 Cartridge::Sampler::Clogged in FILTERING -- Cartridge clogged @18:24:40.07 Pressure.coast @18:24:40.25 Sampled 81.9ml @18:24:42.23 -> Cmd.startProcessing @18:24:42.48 Plunge.seek :reagent @18:24:43.34 Sample loop closed. Ready to Deliver Reagents @18:24:43.35 Archive.seek :sealed @18:24:47.62 Archive.seek :evac @18:25:01.55 delay 1:00 @18:26:01.58 Archive.seek :clear @18:26:19.30 RNAlater soak for 10:00 @18:36:19.32 Archive.seek :tVent @18:36:21.90 delay 1 second @18:36:22.92 Archive.seek :evac @18:36:38.54 delay 10 seconds @18:36:48.57 Archive.seek :tVent @18:37:04.18 delay 1 second @18:37:05.20 Archive.seek :evac @18:37:20.82 delay 10 seconds @18:37:30.85 Sample preserved and evacuated @18:37:32.01 -> Cmd.stop @18:37:32.15 Carousel.seek 25 @18:37:32.32 Plunge.seek :locked @18:37:33.16 PinPort.seek :clear @18:37:33.29 Archive.seek :clear @18:37:33.43 Air.seek :clear @18:37:33.56 Lysis1.seek :clear @18:37:51.05 Archive.coast @18:37:51.10 Air.coast @18:37:51.15 Lysis1.coast @18:37:51.21 Lysis2.coast @18:37:51.25 Plunge.coast @18:37:51.30 SamplePump.coast @18:37:51.35 Toroid.coast @18:37:51.40 Carousel.coast @18:37:51.45 PinPort.coast @18:37:51.63 Gate.power :motor,:OFF @18:37:51.65 Gate.power :core,:OFF @18:37:51.67 Gate.power :analytic1,:OFF @18:37:51.69 Gate.power :analytic2,:OFF @18:37:51.71 Gate.power :analytic3,:OFF @18:37:51.73 Gate.power :main,:OFF @18:37:51.75 Safely stopped and ready to power off ##-- file closed 2019-08-23T22:53:42.802Z ##-- file opened 2019-08-23T22:53:42.805Z @18:53:43.34 -> showStatus @18:53:45.36 -> Cmd.loadCartridge -15 @18:53:45.50 Gate.power :main,:ON,limit to 5000mA @18:53:45.51 Gate.power :analytic1,:ON,limit to 5000mA @18:53:45.54 Gate.power :analytic2,:ON,limit to 5000mA @18:53:45.56 Gate.power :analytic3,:ON,limit to 5000mA @18:53:45.69 Powering core bus @18:53:47.97 SPR Module 1, FW Rev. B, FPGA Rev. C @18:53:48.11 Archive.configure :default @18:53:48.23 Air.configure :default @18:53:48.33 Lysis1.configure :default @18:53:48.43 Lysis2.configure :default @18:53:48.55 Plunge.configure :default @18:53:48.67 SamplePump.configure :default @18:53:48.79 ExtraPump.configure :default @18:53:48.91 Toroid.configure :default @18:53:49.03 Carousel.configure :default @18:53:49.15 Pressure.configure :default @18:53:49.25 PinPort.configure :default @18:53:49.31 All elf controllers running firmware version 4.58 @18:53:49.33 Gate.power :motor,:ON,limit to 5000mA @18:53:49.45 Archive.reconfigure :default @18:53:49.81 Archive.home.jog 0 @18:53:49.94 Toroid.reconfigure :default @18:53:50.01 Plunge.reconfigure :default @18:53:50.05 Lysis1.reconfigure :default @18:53:50.09 Air.reconfigure :default @18:53:50.12 PinPort.reconfigure :default @18:53:50.22 Lysis2.reconfigure :default @18:53:50.41 Lysis2.home.jog 0 @18:53:50.46 Toroid.home.jog 0 @18:53:50.52 Lysis1.home.jog 0 @18:53:50.58 Plunge.home.jog 0 @18:53:50.64 PinPort.home.jog 0 @18:53:50.69 Air.home.jog 0 @18:53:50.96 Archive.reconfigure :homing @18:53:51.12 Archive.jog 1378 @18:53:51.28 Toroid.reconfigure :homing @18:53:51.32 Plunge.reconfigure :homing @18:53:51.35 Air.reconfigure :homing @18:53:51.39 Lysis1.reconfigure :homing @18:53:51.43 PinPort.reconfigure :homing @18:53:51.46 Lysis2.reconfigure :homing @18:53:51.71 Lysis2.jog 1427 @18:53:51.77 PinPort.jog -106 @18:53:51.82 Air.jog 1402 @18:53:51.88 Lysis1.jog 1397 @18:53:51.94 Plunge.jog 1541 @18:53:52.01 Toroid.jog 623 @18:53:52.08 PinPort.setRawPosition! 0 @18:53:52.13 PinPort.seek :home @18:53:52.22 PinPort.reconfigure :default @18:53:52.30 Archive.setRawPosition! 50 @18:53:52.34 Archive.seek :home @18:53:52.62 Archive.reconfigure :default @18:53:52.88 Lysis2.setRawPosition! 50 @18:53:52.92 Lysis2.seek :home @18:53:53.04 Lysis1.setRawPosition! 50 @18:53:53.06 Air.setRawPosition! 50 @18:53:53.13 Lysis1.seek :home @18:53:53.17 Air.seek :home @18:53:53.33 Plunge.setRawPosition! 50 @18:53:53.35 Lysis2.reconfigure :default @18:53:53.42 Plunge.seek :home @18:53:53.55 Lysis1.reconfigure :default @18:53:53.58 Air.reconfigure :default @18:53:53.75 Plunge.reconfigure :default @18:53:54.13 Toroid.setRawPosition! 0 @18:53:54.17 Toroid.seek :home @18:53:54.26 Toroid.reconfigure :default @18:53:54.39 Toroid.seek :clear @18:53:56.01 Carousel.reconfigure :default @18:53:56.08 Carousel.home.jog 0 @18:53:56.88 Carousel.seek 25 @18:53:57.04 Selecting Cartridge 22 @18:53:57.29 Carousel.seek 22 @18:53:58.18 Lysis1.seek :locked @18:54:02.31 Plunge.seek :locked @18:54:02.43 Air.seek :locked @18:54:06.55 Powering cartridge bus @18:54:08.67 Gate.setIR 1750,5000,0,6 @18:54:08.80 Gate.setIR 0,5000,0,6 @18:54:08.86 Loaded Lyse-n-Go Cartridge @18:54:08.87 PuckHeater.configure HeatConfig @18:54:08.91 Gate.power :heat,:ON,limit to 5000mA @18:54:24.28 -> Cmd.startFiltering @18:54:24.51 Duration of filtering limited to 2:05:00 @18:54:24.77 Priming sample loop w/100ml, bypass w/10ml @18:54:24.78 SamplePump.setPosition! 0ml @18:54:24.83 Bypass.open @18:54:26.32 Intake.open @18:54:27.15 Waiting up to 20 seconds for sea pressure to stabilize +/-0.50psi @18:54:29.99 Vacuum tare is 52% of full scale @18:54:30.12 Pressure.reconfigure :default @18:54:30.18 Pressure.hold @18:54:30.34 SamplePump.reconfigure :prime @18:54:30.42 SamplePump.seek 10ml,1:21 @18:54:39.37 Pressure.coast @18:54:39.42 SamplePump.setPosition! 0ml @18:54:39.47 Exhaust.open @18:54:40.92 Bypass.close @18:54:42.49 Pressure.reconfigure :default @18:54:42.55 Pressure.hold @18:54:42.77 SamplePump.reconfigure :prime @18:54:42.84 SamplePump.seek 100ml,8:51 @18:56:38.62 Pressure.coast @18:56:38.68 Bypass.open @18:56:39.39 Intake.close @18:56:40.24 Toroid.reconfigure :hold @18:56:40.30 Toroid.seek :crack @18:56:41.10 Toroid.reconfigure :default @18:56:41.16 Toroid.seek :clear @18:56:42.72 Toroid.reconfigure :hold @18:56:42.79 Toroid.seek :cartridge @18:56:44.61 Toroid.reconfigure :default @18:56:44.68 Toroid.seek :clear @18:56:46.64 Pressurizing cartridge to 26psi above 13.5psia @18:56:46.66 SamplePump.setPosition! 0ml @18:56:46.70 Intake.open @18:56:47.46 Bypass.close @18:56:48.18 Exhaust.close @18:56:49.01 Pressure.reconfigure :default @18:56:49.06 Pressure.hold @18:56:49.23 SamplePump.reconfigure :charge @18:56:49.30 SamplePump.seek 2.3ml,42 seconds @18:57:00.13 Pressure.coast @18:57:00.18 Intake.close @18:57:01.01 Pressurized cartridge with 0.550ml to 26.1psi @18:57:01.02 Isolated @35.9psia (22.4psi) @18:57:01.03 Checking for cartridge leaks from 35.9psia @18:57:01.07 Waiting up to 20 seconds for cartridge pressure to stabilize +/-0.75psi @18:57:06.11 Cartridge pressure fell 1% to 35.6psia @18:57:06.19 Sampling 1000.0ml @18:57:06.20 SamplePump.setPosition! 0ml @18:57:06.25 Exhaust.open @18:57:06.95 Intake.open @18:57:07.81 Pressure.reconfigure :default @18:57:07.87 Pressure.hold @18:57:08.09 SamplePump.reconfigure :sample @18:57:08.17 SamplePump.seek 1000ml,1:23:53 @18:57:10.84 Cartridge 22 sampling 1/1000ml at 0.52ml/s with 24.4psi vacuum @18:58:10.85 Cartridge 22 sampling 33/1000ml at 0.51ml/s with 25.2psi vacuum @18:59:10.84 Cartridge 22 sampling 64/1000ml at 0.48ml/s with 23.7psi vacuum @19:00:10.85 Cartridge 22 sampling 92/1000ml at 0.44ml/s with 23.6psi vacuum @19:01:10.85 Cartridge 22 sampling 118/1000ml at 0.44ml/s with 24.0psi vacuum @19:02:10.85 Cartridge 22 sampling 142/1000ml at 0.39ml/s with 27.6psi vacuum @19:03:10.85 Cartridge 22 sampling 165/1000ml at 0.39ml/s with 24.1psi vacuum @19:04:10.84 Cartridge 22 sampling 185/1000ml at 0.32ml/s with 26.9psi vacuum @19:05:11.23 Cartridge 22 sampling 204/1000ml at 0.27ml/s with 25.2psi vacuum @19:06:10.85 Cartridge 22 sampling 222/1000ml at 0.25ml/s with 25.7psi vacuum @19:07:10.85 Cartridge 22 sampling 237/1000ml at 0.22ml/s with 24.8psi vacuum @19:08:10.85 Cartridge 22 sampling 251/1000ml at 0.23ml/s with 21.7psi vacuum @19:09:10.84 Cartridge 22 sampling 264/1000ml at 0.20ml/s with 22.4psi vacuum @19:10:10.85 Cartridge 22 sampling 277/1000ml at 0.20ml/s with 26.7psi vacuum @19:11:10.85 Cartridge 22 sampling 289/1000ml at 0.20ml/s with 26.4psi vacuum @19:11:56.67 Flow averaged 0.34ml/s over 14:43 @19:11:56.70 Waiting up to 16 seconds for vacuum to reduce from 29.2 to 18.0psi @19:11:57.70 Relieved excess vacuum in 6.7 seconds @19:11:57.72 SamplePump.seek 1000ml,59:01 @19:11:59.45 Flow estimate reduced to 0.27ml/s @19:11:59.48 Waiting up to 16 seconds for vacuum to reduce from 29.1 to 18.0psi @19:12:00.48 Relieved excess vacuum in 2.6 seconds @19:12:00.50 SamplePump.seek 1000ml,59:00 @19:12:02.29 Flow estimate reduced to 0.22ml/s @19:12:02.35 Waiting up to 16 seconds for vacuum to reduce from 29.3 to 18.0psi @19:12:03.05 Relieved excess vacuum in 2.2 seconds @19:12:03.07 SamplePump.seek 1000ml,58:58 @19:12:10.85 Cartridge 22 sampling 300/1000ml at 0.20ml/s with 26.7psi vacuum @19:12:28.74 Flow averaged 0.29ml/s over 18 seconds @19:12:28.77 Waiting up to 16 seconds for vacuum to reduce from 29.2 to 18.0psi @19:12:29.76 Relieved excess vacuum in 8.8 seconds @19:12:29.79 SamplePump.seek 1000ml,58:32 @19:12:31.53 Flow estimate reduced to 0.23ml/s @19:12:31.56 Waiting up to 19 seconds for vacuum to reduce from 30.2 to 18.0psi @19:12:32.58 Relieved excess vacuum in 2.7 seconds @19:12:32.60 SamplePump.seek 1000ml,58:31 @19:12:34.35 Flow estimate reduced to 0.18ml/s @19:12:34.37 Intake.close @19:12:34.42 Exhaust.close @19:12:34.58 Toroid.reconfigure :hold @19:12:34.65 Toroid.seek :bypass @19:12:36.27 Toroid.reconfigure :default @19:12:36.34 Toroid.seek :clear @19:12:37.96 Cartridge::Sampler::Clogged in FILTERING -- Cartridge clogged @19:12:37.98 Pressure.coast @19:12:38.16 Sampled 304.6ml @19:12:40.43 -> Cmd.startProcessing @19:12:42.28 SPR.command \"read_sequences\" @19:12:42.87 SPR.command \"stats_on\" @19:12:42.91 SPR.command \"start 0 1\" @19:12:44.92 Begun log /var/log/esp/spr19aug2319h.spr @19:12:45.72 Handoff.select :waste @19:12:45.90 Archive.seek :empty @19:12:53.08 Syringe tare is 20% of full scale @19:13:03.60 PinPort.seek :cartridge @19:13:08.16 Lysis1.seek 1350ul @19:13:10.63 Lysis2.seek 1700ul @19:13:13.72 Plunge.seek :reagent @19:13:14.57 Evacuating puck with filter bubble point of 50psi @19:13:14.59 PinPort.seek :cartridge @19:13:14.68 Handoff.select :waste @19:13:22.01 Air pumping 1 strokes to reach 8psi @19:13:22.02 Air.reconfigure :gulp @19:13:22.11 Air.seek :tVent @19:13:23.91 0.1psi after gulp @19:13:23.92 Air stroke #1 of 1 @19:13:23.94 Air.reconfigure :pressurize @19:13:24.04 Air.seek :pressurized @19:13:36.86 -0.0psi after pressurize @19:13:36.87 Air.reconfigure :compress @19:13:36.94 Air.seek :evac @19:13:39.61 0.2psi after compress @19:13:53.91 0.1psi after compress (stable) @19:13:54.03 at 0.1psi Opened to waste @19:13:54.04 Handoff.select :blocked @19:13:54.23 Air pumping 10 strokes to reach 50psi @19:13:54.24 Air.reconfigure :gulp @19:13:54.33 Air.seek :tVent @19:14:04.22 5.0psi after gulp @19:14:04.23 Air stroke #1 of 10 @19:14:04.25 Air.reconfigure :pressurize @19:14:04.33 Air.seek :pressurized @19:14:17.16 8.3psi after pressurize @19:14:17.17 Air.reconfigure :compress @19:14:17.25 Air.seek :evac @19:14:19.92 9.3psi after compress @19:15:14.29 37.1psi after compress (stable) @19:15:14.31 Air.reconfigure :gulp @19:15:14.39 Air.seek :tVent @19:15:24.27 39.0psi after gulp @19:15:24.28 Air stroke #2 of 10 @19:15:24.30 Air.reconfigure :pressurize @19:15:24.73 Air.seek :pressurized @19:15:37.58 37.4psi after pressurize @19:15:37.59 Air.reconfigure :compress @19:15:37.67 Air.seek :evac @19:15:40.34 36.0psi after compress @19:16:02.13 Reached 50.0 of 50.0psi after pumping 4672ul (3.00 strokes) @19:16:02.14 Handoff.select :waste @19:16:11.71 delay 30 seconds @19:16:41.73 Handoff.select :blocked @19:16:56.95 Pressure too High, open to waste again (9.6psi) @19:16:56.97 Handoff.select :waste @19:16:57.09 delay 30 seconds @19:17:27.12 Handoff.select :blocked @19:17:50.37 Pressure too High, open to waste again (8.0psi) @19:17:50.38 Handoff.select :waste @19:17:50.50 delay 30 seconds @19:18:20.52 Handoff.select :blocked @19:18:23.49 Pressure too High, open to waste again (8.6psi) @19:18:23.50 Handoff.select :waste @19:18:23.63 delay 30 seconds @19:18:53.65 Handoff.select :blocked @19:19:20.41 Handoff.select :waste @19:19:20.53 PSI at @5.42psi at evacEnd @19:19:20.54 Handoff.select :blocked @19:19:20.67 Air.reconfigure :gulp @19:19:20.78 Air.seek :tVent @19:19:37.84 Stable @3.8psi after Handoff blocked @19:19:37.93 Air pumping 10 strokes to reach 34psi Air stroke #1 of 10 @19:19:37.95 Air.reconfigure :pressurize @19:19:38.03 Air.seek :pressurized @19:19:50.85 4.2psi after pressurize @19:19:50.88 Air.reconfigure :compress @19:19:50.97 Air.seek :evac @19:19:53.64 5.4psi after compress @19:20:07.95 6.4psi after compress (stable) @19:20:07.96 Air.reconfigure :gulp @19:20:08.04 Air.seek :tVent @19:20:17.93 14.1psi after gulp @19:20:17.94 Air stroke #2 of 10 @19:20:17.96 Air.reconfigure :pressurize @19:20:18.04 Air.seek :pressurized @19:20:30.86 14.6psi after pressurize @19:20:30.88 Air.reconfigure :compress @19:20:30.95 Air.seek :evac @19:20:33.62 15.5psi after compress @19:20:54.72 23.7psi after compress (stable) @19:20:54.74 Air.reconfigure :gulp @19:20:54.82 Air.seek :tVent @19:21:04.71 24.2psi after gulp @19:21:04.72 Air stroke #3 of 10 @19:21:04.74 Air.reconfigure :pressurize @19:21:04.83 Air.seek :pressurized @19:21:17.66 24.1psi after pressurize @19:21:17.67 Air.reconfigure :compress @19:21:17.75 Air.seek :evac @19:21:20.42 24.6psi after compress @19:21:40.41 32.0psi after compress (stable) @19:21:40.43 Air.reconfigure :gulp @19:21:40.51 Air.seek :tVent @19:21:50.39 32.4psi after gulp @19:21:50.46 Air stroke #4 of 10 @19:21:50.48 Air.reconfigure :pressurize @19:21:50.55 Air.seek :pressurized @19:22:03.37 32.1psi after pressurize @19:22:03.45 Air.reconfigure :compress @19:22:03.52 Air.seek :evac @19:22:06.21 31.9psi after compress @19:22:20.23 33.0psi after compress (stable) @19:22:20.25 Air.reconfigure :gulp @19:22:20.35 Air.seek :tVent @19:22:23.10 Reached 33.8 of 33.8psi after pumping 6230ul (4.00 strokes) @19:22:23.11 Handoff.select :waste @19:22:42.64 delay 30 seconds @19:23:12.66 Handoff.select :blocked @19:23:37.68 Handoff.select :waste @19:23:37.80 PSI at @0.81psi at evacEnd @19:23:37.81 Air.reconfigure :default @19:23:37.94 Air.seek :fVent @19:23:43.29 delay 5 seconds @19:23:48.31 Seawater evacuated, Presure above/below filter released. Lysis begins @19:23:48.38 Lysis1.reconfigure :slow @19:23:48.45 Lysis1.seek 1050ul @19:24:18.47 delay 5 seconds @19:24:23.49 Handoff.select :blocked @19:24:23.66 Lysis1.seek 450ul @19:25:23.61 delay 3 seconds @19:25:26.70 Air.reconfigure to mix into 1.37806 parts Lysis1 @19:25:27.09 Air.seek :evac @19:25:27.13 Lysis1.seek 300ul @19:25:42.23 Air.reconfigure :default @19:25:42.29 Air.seek :full @19:25:56.49 Lysis1.seek :empty @19:26:26.56 Lysis Delivered. Syringe pressure @27.4psi @19:26:26.60 PuckHeater.seek 84C @19:27:13.99 PuckHeater.hold 15:00,84C @19:42:11.98 Lysis complete. Syringe pressure @33.8psi @19:42:11.99 Handoff.select :blocked @19:42:12.12 Lysis1.reconfigure :halfSpeed @19:42:12.19 Lysis1.seek 200ul @19:42:15.96 delay 1 second @19:42:16.98 Lysis1.seek :empty @19:42:20.79 Initial AirS pressure @34.9psi @19:42:20.85 Lysis1.reconfigure :extract @19:42:20.94 Lysis1.seek 900ul,10:00 @19:42:22.09 Air pumping 10 strokes to reach 21psi @19:42:22.10 Air stroke #1 of 10 @19:42:22.12 Air.reconfigure :pressurize @19:42:22.20 Air.seek :pressurized @19:42:35.04 15.6psi after pressurize @19:42:35.05 Air.reconfigure :compress @19:42:35.13 Air.seek :evac @19:42:37.79 17.0psi after compress @19:42:52.05 15.5psi after compress (stable) @19:42:52.07 Air.reconfigure :gulp @19:42:52.15 Air.seek :tVent @19:43:02.03 15.4psi after gulp @19:43:02.04 Air stroke #2 of 10 @19:43:02.06 Air.reconfigure :pressurize @19:43:02.14 Air.seek :pressurized @19:43:14.99 15.9psi after pressurize @19:43:15.00 Air.reconfigure :compress @19:43:15.08 Air.seek :evac @19:43:17.75 15.0psi after compress @19:43:34.96 15.5psi after compress (stable) @19:43:34.98 Air.reconfigure :gulp @19:43:35.05 Air.seek :tVent @19:43:44.94 14.6psi after gulp @19:43:44.95 Air stroke #3 of 10 @19:43:44.97 Air.reconfigure :pressurize @19:43:45.04 Air.seek :pressurized @19:43:57.87 14.4psi after pressurize @19:43:57.88 Air.reconfigure :compress @19:43:57.96 Air.seek :evac @19:44:00.64 15.1psi after compress @19:44:10.27 Air.reconfigure :default @19:44:10.34 Air.hold @19:44:10.51 Lysis1 at 900ul @17.2psi @19:44:10.53 Lysis1.reconfigure :default @19:44:10.61 Lysis1.seek 925ul @19:44:11.32 Syringe::Overpressure in PROCESSING -- 17.4psi after recovery pull -- Skipping SPR @19:44:11.34 SPR.command \"start 2 14\" @19:44:12.64 Handoff.select :waste @19:44:13.13 Ended log /var/log/esp/spr19aug2319h.spr @19:44:13.14 SPR.command \"stats_off\" @19:44:15.01 -> Cmd.stop @19:44:15.10 Handoff.select :close @19:44:15.22 Gate.power :heat,:OFF @19:44:15.24 Gate.power :cartridge,:OFF @19:44:15.34 Carousel.seek 22 @19:44:15.51 Plunge.seek :locked @19:44:16.34 PinPort.seek :clear @19:44:20.96 Archive.seek :clear @19:44:21.09 Air.seek :clear @19:44:21.22 Lysis1.seek :clear @19:44:21.36 Lysis2.seek :clear @19:44:38.70 Archive.coast @19:44:38.76 Air.coast @19:44:38.80 Lysis1.coast @19:44:38.86 Lysis2.coast @19:44:38.90 Plunge.coast @19:44:38.95 SamplePump.coast @19:44:39.00 Toroid.coast @19:44:39.05 Carousel.coast @19:44:39.10 PinPort.coast @19:44:39.29 Gate.power :motor,:OFF @19:44:39.31 Gate.power :core,:OFF @19:44:39.33 Gate.power :analytic1,:OFF @19:44:39.35 Gate.power :analytic2,:OFF @19:44:39.37 Gate.power :analytic3,:OFF @19:44:39.39 Gate.power :main,:OFF @19:44:39.41 Safely stopped and ready to power off ##-- file closed 2019-08-24T10:08:20.698Z