INFO 2024-04-09 22:56:32,847Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/makai/missionlogs/2020/20201007_20201017/20201012T160908/202010121609_202010122029.nc4 file... INFO 2024-04-09 22:56:32,848Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/202010121609_202010122029.nc4 INFO 2024-04-09 22:56:33,454Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/makai/missionlogs/2020/20201007_20201017/20201012T160908/202010121609_202010122029.nc4 INFO 2024-04-09 22:56:33,491Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:33,579Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:33,667Z lrauvNc4ToNetcdf.py createSeries():299 depth : 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:33,754Z lrauvNc4ToNetcdf.py createSeries():299 time : 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:33,839Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:33,936Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:34,025Z lrauvNc4ToNetcdf.py createSeries():299 depth : 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:34,112Z lrauvNc4ToNetcdf.py createSeries():299 time : 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:34,199Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:34,283Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:34,366Z lrauvNc4ToNetcdf.py createSeries():299 depth : 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:34,457Z lrauvNc4ToNetcdf.py createSeries():299 time : 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:34,539Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:34,620Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:34,701Z lrauvNc4ToNetcdf.py createSeries():299 depth : 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:34,784Z lrauvNc4ToNetcdf.py createSeries():299 time : 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:34,843Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes INFO 2024-04-09 22:56:34,852Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2024-04-09 22:56:34,856Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2024-04-09 22:56:34,859Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude INFO 2024-04-09 22:56:34,862Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 22:56:34,867Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:34,898Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 22:56:34,903Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:34,943Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 22:56:34,948Z lrauvNc4ToNetcdf.py createSeries():299 depth : 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:34,980Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 22:56:34,989Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2024-04-09 22:56:34,998Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage INFO 2024-04-09 22:56:35,001Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group Onboard parameter platform_average_current renaming to health_platform_average_current INFO 2024-04-09 22:56:35,006Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2024-04-09 22:56:35,019Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity INFO 2024-04-09 22:56:35,032Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature INFO 2024-04-09 22:56:35,038Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_salinity renaming to bin_mean_sea_water_salinity INFO 2024-04-09 22:56:35,045Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to bin_median_sea_water_salinity INFO 2024-04-09 22:56:35,051Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_temperature renaming to bin_mean_sea_water_temperature INFO 2024-04-09 22:56:35,057Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to bin_median_sea_water_temperature INFO 2024-04-09 22:56:35,063Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle INFO 2024-04-09 22:56:35,066Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2024-04-09 22:56:35,071Z lrauvNc4ToNetcdf.py createSeries():299 downwelling_photosynthetic_photon_flux_in_sea_water: 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:35,096Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR INFO 2024-04-09 22:56:35,102Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2024-04-09 22:56:35,124Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate INFO 2024-04-09 22:56:35,146Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2024-04-09 22:56:35,167Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter OutputChl renaming to chl INFO 2024-04-09 22:56:35,188Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470 INFO 2024-04-09 22:56:35,209Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650 INFO 2024-04-09 22:56:35,230Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg470nm renaming to volumescatcoeff117deg470nm INFO 2024-04-09 22:56:35,251Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg650nm renaming to volumescatcoeff117deg650nm INFO 2024-04-09 22:56:35,267Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff470nm renaming to particulatebackscatteringcoeff470nm INFO 2024-04-09 22:56:35,282Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff650nm renaming to particulatebackscatteringcoeff650nm INFO 2024-04-09 22:56:35,288Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_mean_mass_concentration_of_chlorophyll_in_sea_water INFO 2024-04-09 22:56:35,294Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_median_mass_concentration_of_chlorophyll_in_sea_water INFO 2024-04-09 22:56:35,331Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle: 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:35,397Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 22:56:35,426Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle: 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:35,492Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'n/a', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 22:56:35,525Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation: 21 v_t values found before 2020-10-12 16:09:00 and after 2020-10-12 20:29:00 INFO 2024-04-09 22:56:35,593Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 22:56:35,594Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/makai/missionlogs/2020/20201007_20201017/20201012T160908/202010121609_202010122029.nc4 INFO 2024-04-09 22:56:35,751Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 38432 vehicle dead reckoned longitude and latitude values INFO 2024-04-09 22:56:35,865Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 14 longitude_fix and latititude_fix values from /mbari/LRAUV/makai/missionlogs/2020/20201007_20201017/20201012T160908/202010121609_202010122029.nc4 INFO 2024-04-09 22:56:35,865Z lrauvNc4ToNetcdf.py nudge_coords():786 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2024-04-09 22:56:35,866Z lrauvNc4ToNetcdf.py nudge_coords():807 - - - 0 0.00 - - - INFO 2024-04-09 22:56:35,867Z lrauvNc4ToNetcdf.py nudge_coords():840 0: 0.378 0.0000772 0.0005410 512 3.90 15.96 25.69 2020-10-12 16:13:03.780680895 INFO 2024-04-09 22:56:35,870Z lrauvNc4ToNetcdf.py nudge_coords():840 1: 0.374 0.0054269 0.0007801 9323 62.77 1.45 2.30 2020-10-12 17:15:50.477164030 INFO 2024-04-09 22:56:35,874Z lrauvNc4ToNetcdf.py nudge_coords():840 2: 0.390 0.0001375 0.0002850 331 2.51 13.27 21.02 2020-10-12 17:18:21.620923996 INFO 2024-04-09 22:56:35,876Z lrauvNc4ToNetcdf.py nudge_coords():840 3: 0.384 0.0054689 -0.0003745 9268 62.40 -0.71 -1.11 2020-10-12 18:20:46.140294075 INFO 2024-04-09 22:56:35,879Z lrauvNc4ToNetcdf.py nudge_coords():840 4: 0.384 0.0003443 0.0002665 1123 7.91 3.99 6.24 2020-10-12 18:28:41.191946030 INFO 2024-04-09 22:56:35,881Z lrauvNc4ToNetcdf.py nudge_coords():840 5: 0.389 0.0005430 0.0000723 870 5.85 1.46 2.29 2020-10-12 18:34:32.727946043 INFO 2024-04-09 22:56:35,884Z lrauvNc4ToNetcdf.py nudge_coords():840 6: 0.380 0.0005600 0.0000143 827 5.56 0.30 0.48 2020-10-12 18:40:06.843874931 INFO 2024-04-09 22:56:35,887Z lrauvNc4ToNetcdf.py nudge_coords():840 7: 0.378 0.0005718 0.0000243 817 5.49 0.52 0.82 2020-10-12 18:45:36.940076113 INFO 2024-04-09 22:56:35,889Z lrauvNc4ToNetcdf.py nudge_coords():840 8: 0.370 0.0005130 0.0000432 766 5.15 0.99 1.55 2020-10-12 18:50:46.509377956 INFO 2024-04-09 22:56:35,892Z lrauvNc4ToNetcdf.py nudge_coords():840 9: 0.352 0.0001315 0.0000228 178 1.20 2.26 3.53 2020-10-12 18:51:58.760804892 INFO 2024-04-09 22:56:35,895Z lrauvNc4ToNetcdf.py nudge_coords():840 10: 0.374 0.0095027 -0.0019406 12702 85.54 -2.68 -4.20 2020-10-12 20:17:31.512140036 INFO 2024-04-09 22:56:35,899Z lrauvNc4ToNetcdf.py nudge_coords():840 11: 0.387 0.0008332 -0.0002940 816 5.49 -6.32 -9.92 2020-10-12 20:23:01.352785110 INFO 2024-04-09 22:56:35,901Z lrauvNc4ToNetcdf.py nudge_coords():840 12: 0.382 0.0008580 -0.0002625 861 5.85 -5.30 -8.31 2020-10-12 20:28:52.931786060 INFO 2024-04-09 22:56:35,904Z lrauvNc4ToNetcdf.py nudge_coords():871 14: - - - 37 0.27 - - INFO 2024-04-09 22:56:35,904Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 38431 INFO 2024-04-09 22:56:35,937Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/makai_ac/between/20201012T150908/20201012T212909/data.csv INFO 2024-04-09 22:56:36,033Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database INFO 2024-04-09 22:56:36,039Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['fix_time', 'fix_latitude', 'fix_longitude', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'health_platform_average_current', 'control_inputs_buoyancy_position', 'salinity', 'temperature', 'bin_mean_sea_water_salinity', 'bin_median_sea_water_salinity', 'bin_mean_sea_water_temperature', 'bin_median_sea_water_temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'PAR', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'volumescatcoeff117deg470nm', 'volumescatcoeff117deg650nm', 'particulatebackscatteringcoeff470nm', 'particulatebackscatteringcoeff650nm', 'bin_mean_mass_concentration_of_chlorophyll_in_sea_water', 'bin_median_mass_concentration_of_chlorophyll_in_sea_water', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2024-04-09 22:56:36,489Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S' INFO 2024-04-09 22:56:36,957Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/makai/missionlogs/2020/20201007_20201017/20201012T160908/202010121609_202010122029_2S_scieng.nc