INFO 2024-04-09 22:56:06,983Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/makai/missionlogs/2020/20201007_20201017/20201010T164201/202010101642_202010101650.nc4 file...
INFO 2024-04-09 22:56:06,983Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/202010101642_202010101650.nc4
INFO 2024-04-09 22:56:07,423Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/makai/missionlogs/2020/20201007_20201017/20201010T164201/202010101642_202010101650.nc4
INFO 2024-04-09 22:56:07,450Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:07,510Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:07,569Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:07,627Z lrauvNc4ToNetcdf.py createSeries():299 time     :   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:07,686Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:07,744Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:07,802Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:07,860Z lrauvNc4ToNetcdf.py createSeries():299 time     :   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:07,920Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:07,977Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:08,035Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:08,092Z lrauvNc4ToNetcdf.py createSeries():299 time     :   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:08,150Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:08,207Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:08,264Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:08,322Z lrauvNc4ToNetcdf.py createSeries():299 time     :   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:08,362Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes
INFO 2024-04-09 22:56:08,367Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2024-04-09 22:56:08,371Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2024-04-09 22:56:08,374Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2024-04-09 22:56:08,375Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2024-04-09 22:56:08,376Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:08,380Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 22:56:08,381Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:08,385Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 22:56:08,386Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:08,390Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 22:56:08,399Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2024-04-09 22:56:08,408Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2024-04-09 22:56:08,411Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group Onboard parameter platform_average_current renaming to health_platform_average_current
INFO 2024-04-09 22:56:08,412Z lrauvNc4ToNetcdf.py createSeries():299 platform_buoyancy_position:   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:08,415Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2024-04-09 22:56:08,419Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2024-04-09 22:56:08,422Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2024-04-09 22:56:08,426Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_salinity renaming to bin_mean_sea_water_salinity
INFO 2024-04-09 22:56:08,429Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to bin_median_sea_water_salinity
INFO 2024-04-09 22:56:08,432Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_temperature renaming to bin_mean_sea_water_temperature
INFO 2024-04-09 22:56:08,436Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to bin_median_sea_water_temperature
INFO 2024-04-09 22:56:08,439Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2024-04-09 22:56:08,442Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2024-04-09 22:56:08,443Z lrauvNc4ToNetcdf.py createSeries():299 downwelling_photosynthetic_photon_flux_in_sea_water:   21 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:08,447Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2024-04-09 22:56:08,450Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2024-04-09 22:56:08,454Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2024-04-09 22:56:08,458Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2024-04-09 22:56:08,461Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2024-04-09 22:56:08,465Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2024-04-09 22:56:08,469Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2024-04-09 22:56:08,473Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg470nm renaming to volumescatcoeff117deg470nm
INFO 2024-04-09 22:56:08,476Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg650nm renaming to volumescatcoeff117deg650nm
INFO 2024-04-09 22:56:08,480Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff470nm renaming to particulatebackscatteringcoeff470nm
INFO 2024-04-09 22:56:08,483Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff650nm renaming to particulatebackscatteringcoeff650nm
INFO 2024-04-09 22:56:08,486Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_mean_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 22:56:08,489Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_median_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 22:56:08,516Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle:   18 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:08,710Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:56:08,730Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle:   18 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:08,925Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'n/a', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:56:08,944Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation:   18 v_t values found before 2020-10-10 16:42:00 and after 2020-10-10 16:50:00
INFO 2024-04-09 22:56:09,140Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 22:56:09,141Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/makai/missionlogs/2020/20201007_20201017/20201010T164201/202010101642_202010101650.nc4
INFO 2024-04-09 22:56:09,238Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 957 vehicle dead reckoned longitude and latitude values
INFO 2024-04-09 22:56:09,335Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 7 longitude_fix and latititude_fix values from /mbari/LRAUV/makai/missionlogs/2020/20201007_20201017/20201010T164201/202010101642_202010101650.nc4
INFO 2024-04-09 22:56:09,335Z lrauvNc4ToNetcdf.py nudge_coords():786 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2024-04-09 22:56:09,335Z lrauvNc4ToNetcdf.py nudge_coords():807                  -            -            -         0      0.00              -              -                             -
INFO 2024-04-09 22:56:09,336Z lrauvNc4ToNetcdf.py nudge_coords():840    0:        0.381    0.0000438    0.0000388       125      0.84           5.37           8.61 2020-10-10 16:44:23.683984041
INFO 2024-04-09 22:56:09,338Z lrauvNc4ToNetcdf.py nudge_coords():840    1:        0.403    0.0000425    0.0001063       179      1.28           9.59          15.36 2020-10-10 16:45:41.028223991
INFO 2024-04-09 22:56:09,340Z lrauvNc4ToNetcdf.py nudge_coords():840    2:        0.318    0.0000002    0.0000067         8      0.05          16.46          26.38 2020-10-10 16:45:44.312344074
INFO 2024-04-09 22:56:09,342Z lrauvNc4ToNetcdf.py nudge_coords():840    3:        0.347    0.0000226    0.0000331        67      0.49           7.79          12.48 2020-10-10 16:46:14.193867922
INFO 2024-04-09 22:56:09,344Z lrauvNc4ToNetcdf.py nudge_coords():840    4:        0.365    0.0001128    0.0001402       352      2.37           6.84          10.96 2020-10-10 16:48:36.754225016
INFO 2024-04-09 22:56:09,346Z lrauvNc4ToNetcdf.py nudge_coords():840    5:        0.374   -0.0000631    0.0001421       166      1.11          14.78          23.68 2020-10-10 16:49:43.832164049
INFO 2024-04-09 22:56:09,347Z lrauvNc4ToNetcdf.py nudge_coords():871    7:            -            -            -        59      0.39              -              -
INFO 2024-04-09 22:56:09,348Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 956
INFO 2024-04-09 22:56:09,373Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/makai_ac/between/20201010T154211/20201010T175008/data.csv
INFO 2024-04-09 22:56:09,468Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database
INFO 2024-04-09 22:56:09,471Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['fix_time', 'fix_latitude', 'fix_longitude', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'health_platform_average_current', 'control_inputs_buoyancy_position', 'salinity', 'temperature', 'bin_mean_sea_water_salinity', 'bin_median_sea_water_salinity', 'bin_mean_sea_water_temperature', 'bin_median_sea_water_temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'PAR', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'volumescatcoeff117deg470nm', 'volumescatcoeff117deg650nm', 'particulatebackscatteringcoeff470nm', 'particulatebackscatteringcoeff650nm', 'bin_mean_mass_concentration_of_chlorophyll_in_sea_water', 'bin_median_mass_concentration_of_chlorophyll_in_sea_water', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2024-04-09 22:56:09,810Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S'
INFO 2024-04-09 22:56:10,148Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/makai/missionlogs/2020/20201007_20201017/20201010T164201/202010101642_202010101650_2S_scieng.nc