INFO 2024-04-09 22:55:32,464Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/makai/missionlogs/2020/20201007_20201017/20201008T040049/202010080400_202010080521.nc4 file... INFO 2024-04-09 22:55:32,464Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/202010080400_202010080521.nc4 INFO 2024-04-09 22:55:33,081Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/makai/missionlogs/2020/20201007_20201017/20201008T040049/202010080400_202010080521.nc4 INFO 2024-04-09 22:55:33,121Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 101 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:33,207Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 101 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:33,295Z lrauvNc4ToNetcdf.py createSeries():299 depth : 102 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:33,380Z lrauvNc4ToNetcdf.py createSeries():299 time : 102 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:33,465Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 101 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:33,549Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 101 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:33,633Z lrauvNc4ToNetcdf.py createSeries():299 depth : 102 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:33,720Z lrauvNc4ToNetcdf.py createSeries():299 time : 102 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:33,806Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 101 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:33,891Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 101 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:33,975Z lrauvNc4ToNetcdf.py createSeries():299 depth : 102 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,062Z lrauvNc4ToNetcdf.py createSeries():299 time : 102 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,146Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 101 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,230Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 101 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,314Z lrauvNc4ToNetcdf.py createSeries():299 depth : 102 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,402Z lrauvNc4ToNetcdf.py createSeries():299 time : 102 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,469Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes INFO 2024-04-09 22:55:34,477Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2024-04-09 22:55:34,481Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2024-04-09 22:55:34,484Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude INFO 2024-04-09 22:55:34,487Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 22:55:34,490Z lrauvNc4ToNetcdf.py createSeries():299 longitude: 101 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,507Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 22:55:34,510Z lrauvNc4ToNetcdf.py createSeries():299 latitude : 101 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,527Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 22:55:34,530Z lrauvNc4ToNetcdf.py createSeries():299 depth : 101 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,547Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources INFO 2024-04-09 22:55:34,557Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2024-04-09 22:55:34,565Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage INFO 2024-04-09 22:55:34,569Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group Onboard parameter platform_average_current renaming to health_platform_average_current INFO 2024-04-09 22:55:34,573Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2024-04-09 22:55:34,574Z lrauvNc4ToNetcdf.py createSeries():299 sea_water_salinity: 40 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,581Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity INFO 2024-04-09 22:55:34,582Z lrauvNc4ToNetcdf.py createSeries():299 sea_water_temperature: 40 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,589Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature INFO 2024-04-09 22:55:34,590Z lrauvNc4ToNetcdf.py createSeries():299 bin_mean_sea_water_salinity: 8 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,594Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_salinity renaming to bin_mean_sea_water_salinity INFO 2024-04-09 22:55:34,595Z lrauvNc4ToNetcdf.py createSeries():299 bin_median_sea_water_salinity: 8 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,599Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to bin_median_sea_water_salinity INFO 2024-04-09 22:55:34,600Z lrauvNc4ToNetcdf.py createSeries():299 bin_mean_sea_water_temperature: 8 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,604Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_temperature renaming to bin_mean_sea_water_temperature INFO 2024-04-09 22:55:34,605Z lrauvNc4ToNetcdf.py createSeries():299 bin_median_sea_water_temperature: 8 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,609Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to bin_median_sea_water_temperature INFO 2024-04-09 22:55:34,614Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle INFO 2024-04-09 22:55:34,617Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2024-04-09 22:55:34,620Z lrauvNc4ToNetcdf.py createSeries():299 downwelling_photosynthetic_photon_flux_in_sea_water: 102 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,635Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR INFO 2024-04-09 22:55:34,636Z lrauvNc4ToNetcdf.py createSeries():299 platform_rudder_angle: 39 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,642Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2024-04-09 22:55:34,657Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate INFO 2024-04-09 22:55:34,659Z lrauvNc4ToNetcdf.py createSeries():299 mass_concentration_of_chlorophyll_in_sea_water: 81 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,670Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2024-04-09 22:55:34,672Z lrauvNc4ToNetcdf.py createSeries():299 OutputChl: 81 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,682Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter OutputChl renaming to chl INFO 2024-04-09 22:55:34,684Z lrauvNc4ToNetcdf.py createSeries():299 Output470: 81 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,695Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470 INFO 2024-04-09 22:55:34,697Z lrauvNc4ToNetcdf.py createSeries():299 Output650: 81 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,707Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650 INFO 2024-04-09 22:55:34,709Z lrauvNc4ToNetcdf.py createSeries():299 VolumeScatCoeff117deg470nm: 81 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,720Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg470nm renaming to volumescatcoeff117deg470nm INFO 2024-04-09 22:55:34,722Z lrauvNc4ToNetcdf.py createSeries():299 VolumeScatCoeff117deg650nm: 81 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,732Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg650nm renaming to volumescatcoeff117deg650nm INFO 2024-04-09 22:55:34,733Z lrauvNc4ToNetcdf.py createSeries():299 ParticulateBackscatteringCoeff470nm: 81 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,742Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff470nm renaming to particulatebackscatteringcoeff470nm INFO 2024-04-09 22:55:34,743Z lrauvNc4ToNetcdf.py createSeries():299 ParticulateBackscatteringCoeff650nm: 81 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,751Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff650nm renaming to particulatebackscatteringcoeff650nm INFO 2024-04-09 22:55:34,752Z lrauvNc4ToNetcdf.py createSeries():299 bin_mean_mass_concentration_of_chlorophyll_in_sea_water: 7 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,756Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_mean_mass_concentration_of_chlorophyll_in_sea_water INFO 2024-04-09 22:55:34,757Z lrauvNc4ToNetcdf.py createSeries():299 bin_median_mass_concentration_of_chlorophyll_in_sea_water: 7 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,761Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_median_mass_concentration_of_chlorophyll_in_sea_water INFO 2024-04-09 22:55:34,803Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle: 101 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,869Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 22:55:34,899Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle: 101 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:34,963Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'n/a', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 22:55:34,991Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation: 101 v_t values found before 2020-10-08 04:00:00 and after 2020-10-08 05:21:00 INFO 2024-04-09 22:55:35,055Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2024-04-09 22:55:35,056Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/makai/missionlogs/2020/20201007_20201017/20201008T040049/202010080400_202010080521.nc4 INFO 2024-04-09 22:55:35,199Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 11718 vehicle dead reckoned longitude and latitude values INFO 2024-04-09 22:55:35,328Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 8 longitude_fix and latititude_fix values from /mbari/LRAUV/makai/missionlogs/2020/20201007_20201017/20201008T040049/202010080400_202010080521.nc4 INFO 2024-04-09 22:55:35,328Z lrauvNc4ToNetcdf.py nudge_coords():786 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2024-04-09 22:55:35,328Z lrauvNc4ToNetcdf.py nudge_coords():807 - - - 0 0.00 - - - INFO 2024-04-09 22:55:35,329Z lrauvNc4ToNetcdf.py nudge_coords():840 0: 0.370 0.0006378 0.0000212 1118 7.52 0.32 0.52 2020-10-08 04:10:04.432187080 INFO 2024-04-09 22:55:35,331Z lrauvNc4ToNetcdf.py nudge_coords():840 1: 0.370 0.0004434 0.0001344 792 5.33 2.91 4.68 2020-10-08 04:15:24.444236994 INFO 2024-04-09 22:55:35,333Z lrauvNc4ToNetcdf.py nudge_coords():840 2: 0.369 0.0000660 0.0000205 117 0.78 3.03 4.86 2020-10-08 04:16:11.708458900 INFO 2024-04-09 22:55:35,336Z lrauvNc4ToNetcdf.py nudge_coords():840 3: 0.391 0.0000295 0.0000542 29 0.19 33.17 53.29 2020-10-08 04:16:23.416970015 INFO 2024-04-09 22:55:35,338Z lrauvNc4ToNetcdf.py nudge_coords():840 4: 0.371 0.0000225 -0.0000313 82 0.55 -6.61 -10.63 2020-10-08 04:16:56.596064091 INFO 2024-04-09 22:55:35,340Z lrauvNc4ToNetcdf.py nudge_coords():840 5: 0.374 0.0035532 0.0001666 3886 26.16 0.73 1.18 2020-10-08 04:43:06.605063915 INFO 2024-04-09 22:55:35,342Z lrauvNc4ToNetcdf.py nudge_coords():840 6: 0.382 -0.0000548 -0.0000315 259 1.97 -1.84 -2.97 2020-10-08 04:45:04.936990976 INFO 2024-04-09 22:55:35,346Z lrauvNc4ToNetcdf.py nudge_coords():871 8: - - - 5434 36.58 - - INFO 2024-04-09 22:55:35,346Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 11717 INFO 2024-04-09 22:55:35,377Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/makai_ac/between/20201008T030049/20201008T062141/data.csv INFO 2024-04-09 22:55:35,472Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 0 position values from the Tracking database INFO 2024-04-09 22:55:35,478Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['fix_time', 'fix_latitude', 'fix_longitude', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'health_platform_average_current', 'control_inputs_buoyancy_position', 'salinity', 'temperature', 'bin_mean_sea_water_salinity', 'bin_median_sea_water_salinity', 'bin_mean_sea_water_temperature', 'bin_median_sea_water_temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'PAR', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'volumescatcoeff117deg470nm', 'volumescatcoeff117deg650nm', 'particulatebackscatteringcoeff470nm', 'particulatebackscatteringcoeff650nm', 'bin_mean_mass_concentration_of_chlorophyll_in_sea_water', 'bin_median_mass_concentration_of_chlorophyll_in_sea_water', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2024-04-09 22:55:35,762Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S' INFO 2024-04-09 22:55:35,975Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/makai/missionlogs/2020/20201007_20201017/20201008T040049/202010080400_202010080521_2S_scieng.nc