INFO 2024-04-09 21:54:43,024Z lrauvNc4ToNetcdf.py processResampleNc4File():1207 Reading /mbari/LRAUV/makai/missionlogs/2019/20191210_20191212/20191211T113023/201912111130_201912111834.nc4 file...
INFO 2024-04-09 21:54:43,025Z lrauvNc4ToNetcdf.py processResampleNc4File():1208 After copying to /tmp/201912111130_201912111834.nc4
INFO 2024-04-09 21:54:43,435Z lrauvNc4ToNetcdf.py processResampleNc4File():1210 Read file /mbari/LRAUV/makai/missionlogs/2019/20191210_20191212/20191211T113023/201912111130_201912111834.nc4
INFO 2024-04-09 21:54:43,475Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:43,575Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:43,689Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:43,813Z lrauvNc4ToNetcdf.py createSeries():299 time     :   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:43,949Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:44,083Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:44,216Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:44,331Z lrauvNc4ToNetcdf.py createSeries():299 time     :   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:44,449Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:44,571Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:44,689Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:44,818Z lrauvNc4ToNetcdf.py createSeries():299 time     :   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:44,943Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:45,051Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:45,138Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:45,238Z lrauvNc4ToNetcdf.py createSeries():299 time     :   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:45,311Z lrauvNc4ToNetcdf.py processResampleNc4File():1223 Creating t variable of the time indexes
INFO 2024-04-09 21:54:45,328Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 21:54:45,337Z lrauvNc4ToNetcdf.py createSeries():299 longitude:   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:45,394Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 21:54:45,403Z lrauvNc4ToNetcdf.py createSeries():299 latitude :   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:45,458Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 21:54:45,467Z lrauvNc4ToNetcdf.py createSeries():299 depth    :   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:45,525Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
INFO 2024-04-09 21:54:45,539Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2024-04-09 21:54:45,549Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2024-04-09 21:54:45,554Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2024-04-09 21:54:45,559Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2024-04-09 21:54:45,563Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2024-04-09 21:54:45,565Z lrauvNc4ToNetcdf.py processResampleNc4File():1264 Variable platform_average_current empty so skipping
INFO 2024-04-09 21:54:45,596Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2024-04-09 21:54:45,597Z lrauvNc4ToNetcdf.py createSeries():299 platform_buoyancy_position:   23 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:45,604Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2024-04-09 21:54:45,629Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2024-04-09 21:54:45,655Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2024-04-09 21:54:45,668Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_salinity renaming to bin_mean_sea_water_salinity
INFO 2024-04-09 21:54:45,680Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to bin_median_sea_water_salinity
INFO 2024-04-09 21:54:45,693Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_mean_sea_water_temperature renaming to bin_mean_sea_water_temperature
INFO 2024-04-09 21:54:45,705Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to bin_median_sea_water_temperature
INFO 2024-04-09 21:54:45,724Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2024-04-09 21:54:45,733Z lrauvNc4ToNetcdf.py createSeries():299 downwelling_photosynthetic_photon_flux_in_sea_water:   44 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:45,783Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2024-04-09 21:54:45,800Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2024-04-09 21:54:45,860Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2024-04-09 21:54:45,906Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2024-04-09 21:54:45,952Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2024-04-09 21:54:45,998Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2024-04-09 21:54:46,041Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2024-04-09 21:54:46,083Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg470nm renaming to volumescatcoeff117deg470nm
INFO 2024-04-09 21:54:46,135Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter VolumeScatCoeff117deg650nm renaming to volumescatcoeff117deg650nm
INFO 2024-04-09 21:54:46,165Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff470nm renaming to particulatebackscatteringcoeff470nm
INFO 2024-04-09 21:54:46,195Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter ParticulateBackscatteringCoeff650nm renaming to particulatebackscatteringcoeff650nm
INFO 2024-04-09 21:54:46,205Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_mean_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 21:54:46,216Z lrauvNc4ToNetcdf.py processResampleNc4File():1307 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to bin_median_mass_concentration_of_chlorophyll_in_sea_water
INFO 2024-04-09 21:54:46,260Z lrauvNc4ToNetcdf.py createSeries():299 platform_pitch_angle:   41 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:46,363Z lrauvNc4ToNetcdf.py createNav():564 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 21:54:46,406Z lrauvNc4ToNetcdf.py createSeries():299 platform_roll_angle:   41 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:46,507Z lrauvNc4ToNetcdf.py createNav():564 platform_roll_angle -> roll: {'units': 'n/a', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 21:54:46,551Z lrauvNc4ToNetcdf.py createSeries():299 platform_orientation:   41 v_t values found before 2019-12-11 11:30:00 and after 2019-12-11 18:34:00
INFO 2024-04-09 21:54:46,650Z lrauvNc4ToNetcdf.py createNav():564 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2024-04-09 21:54:46,651Z lrauvNc4ToNetcdf.py nudge_coords():738 /mbari/LRAUV/makai/missionlogs/2019/20191210_20191212/20191211T113023/201912111130_201912111834.nc4
INFO 2024-04-09 21:54:46,889Z lrauvNc4ToNetcdf.py nudge_coords():746 Using 62242 vehicle dead reckoned longitude and latitude values
INFO 2024-04-09 21:54:47,046Z lrauvNc4ToNetcdf.py nudge_coords():772 Using 21 longitude_fix and latititude_fix values from /mbari/LRAUV/makai/missionlogs/2019/20191210_20191212/20191211T113023/201912111130_201912111834.nc4
INFO 2024-04-09 21:54:47,046Z lrauvNc4ToNetcdf.py nudge_coords():786 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2024-04-09 21:54:47,048Z lrauvNc4ToNetcdf.py nudge_coords():807                  -            -            -         0      0.00              -              -                             -
INFO 2024-04-09 21:54:47,050Z lrauvNc4ToNetcdf.py nudge_coords():840    0:        0.399   -0.0000135   -0.0000007        17      0.11          -0.70          -1.15 2019-12-11 11:32:33.419107914
INFO 2024-04-09 21:54:47,053Z lrauvNc4ToNetcdf.py nudge_coords():840    1:        0.309   -0.0001013    0.0000448       169      1.28           3.94           6.50 2019-12-11 11:33:50.533658981
INFO 2024-04-09 21:54:47,056Z lrauvNc4ToNetcdf.py nudge_coords():840    2:        0.346   -0.0002046    0.0001277       459      3.14           4.57           7.53 2019-12-11 11:36:59.440017939
INFO 2024-04-09 21:54:47,058Z lrauvNc4ToNetcdf.py nudge_coords():840    3:        0.367   -0.0000890    0.0000487       189      1.27           4.32           7.12 2019-12-11 11:38:15.856519938
INFO 2024-04-09 21:54:47,061Z lrauvNc4ToNetcdf.py nudge_coords():840    4:        0.353    0.0000566    0.0004181      9354     62.98           0.75           1.23 2019-12-11 12:41:15.217727900
INFO 2024-04-09 21:54:47,068Z lrauvNc4ToNetcdf.py nudge_coords():840    5:        0.307   -0.0002797   -0.0001203       393      2.97          -4.56          -7.52 2019-12-11 12:44:13.594984055
INFO 2024-04-09 21:54:47,072Z lrauvNc4ToNetcdf.py nudge_coords():840    6:        0.363   -0.0018774   -0.0016735      9904     66.69          -2.81          -4.65 2019-12-11 13:50:55.409441948
INFO 2024-04-09 21:54:47,078Z lrauvNc4ToNetcdf.py nudge_coords():840    7:        0.362   -0.0000708    0.0000082        85      0.57           1.62           2.67 2019-12-11 13:51:29.809494019
INFO 2024-04-09 21:54:47,083Z lrauvNc4ToNetcdf.py nudge_coords():840    8:        0.366   -0.0007046    0.0003812       751      5.05           8.46          13.98 2019-12-11 13:56:33.332309008
INFO 2024-04-09 21:54:47,086Z lrauvNc4ToNetcdf.py nudge_coords():840    9:        0.359   -0.0000868    0.0000545        85      0.57          10.80          17.84 2019-12-11 13:57:07.680392981
INFO 2024-04-09 21:54:47,090Z lrauvNc4ToNetcdf.py nudge_coords():840   10:        0.353   -0.0044484   -0.0035360      9293     62.58          -6.31         -10.47 2019-12-11 14:59:42.660722971
INFO 2024-04-09 21:54:47,096Z lrauvNc4ToNetcdf.py nudge_coords():840   11:        0.350   -0.0007530   -0.0000478       609      4.59          -1.17          -1.93 2019-12-11 15:04:18.269896984
INFO 2024-04-09 21:54:47,099Z lrauvNc4ToNetcdf.py nudge_coords():840   12:        0.364   -0.0059953   -0.0037426      9590     64.57          -6.47         -10.74 2019-12-11 16:08:53.078459978
INFO 2024-04-09 21:54:47,105Z lrauvNc4ToNetcdf.py nudge_coords():840   13:        0.363   -0.0006853    0.0001548       439      3.28           5.27           8.75 2019-12-11 16:12:10.228399038
INFO 2024-04-09 21:54:47,109Z lrauvNc4ToNetcdf.py nudge_coords():840   14:        0.392   -0.0034751   -0.0022796      9601     64.77          -3.94          -6.52 2019-12-11 17:16:56.657083035
INFO 2024-04-09 21:54:47,115Z lrauvNc4ToNetcdf.py nudge_coords():840   15:        0.359   -0.0008940    0.0005327      1573     11.48           5.20           8.60 2019-12-11 17:28:26.099772930
INFO 2024-04-09 21:54:47,118Z lrauvNc4ToNetcdf.py nudge_coords():840   16:        0.359    0.0007016   -0.0004156      4670     31.44          -1.51          -2.45 2019-12-11 17:59:53.080634117
INFO 2024-04-09 21:54:47,122Z lrauvNc4ToNetcdf.py nudge_coords():840   17:        0.346   -0.0001718    0.0003345       412      3.09          12.33          20.03 2019-12-11 18:02:59.171897888
INFO 2024-04-09 21:54:47,126Z lrauvNc4ToNetcdf.py nudge_coords():840   18:        0.504    0.0020046    0.0002512      4556     30.68           0.95           1.52 2019-12-11 18:33:40.145553112
INFO 2024-04-09 21:54:47,129Z lrauvNc4ToNetcdf.py nudge_coords():840   19:        0.315   -0.0000160    0.0000550        38      0.25          25.75          41.11 2019-12-11 18:33:55.550494909
INFO 2024-04-09 21:54:47,133Z lrauvNc4ToNetcdf.py nudge_coords():871   21:            -            -            -        54      0.39              -              -
INFO 2024-04-09 21:54:47,133Z lrauvNc4ToNetcdf.py nudge_coords():875 Points in final series = 62241
INFO 2024-04-09 21:54:47,170Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():622 http://odss.mbari.org/trackingdb/position/makai_ac/between/20191211T103034/20191211T193419/data.csv
INFO 2024-04-09 21:54:47,318Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():642 Found 264 position values from the Tracking database
INFO 2024-04-09 21:54:47,327Z lrauvNc4ToNetcdf.py processResampleNc4File():1395 ['fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'oxygen', 'control_inputs_buoyancy_position', 'salinity', 'temperature', 'bin_mean_sea_water_salinity', 'bin_median_sea_water_salinity', 'bin_mean_sea_water_temperature', 'bin_median_sea_water_temperature', 'control_inputs_elevator_angle', 'PAR', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'volumescatcoeff117deg470nm', 'volumescatcoeff117deg650nm', 'particulatebackscatteringcoeff470nm', 'particulatebackscatteringcoeff650nm', 'bin_mean_mass_concentration_of_chlorophyll_in_sea_water', 'bin_median_mass_concentration_of_chlorophyll_in_sea_water', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2024-04-09 21:54:47,793Z lrauvNc4ToNetcdf.py write_netcdf():241 Saving with resampleFreq = '2S'
INFO 2024-04-09 21:54:48,050Z lrauvNc4ToNetcdf.py processResampleNc4File():1398 Wrote /mbari/LRAUV/makai/missionlogs/2019/20191210_20191212/20191211T113023/201912111130_201912111834_2S_scieng.nc