INFO 2019-08-22 18:09:14,170Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Reading /mbari/LRAUV/makai/missionlogs/2019/20190819_20190821/20190820T151440/201908201514_201908201901.nc4 file... INFO 2019-08-22 18:09:14,171Z lrauvNc4ToNetcdf.py processResampleNc4File():950 After copying to /tmp/201908201514_201908201901.nc4 INFO 2019-08-22 18:09:15,328Z lrauvNc4ToNetcdf.py processResampleNc4File():952 Read file /mbari/LRAUV/makai/missionlogs/2019/20190819_20190821/20190820T151440/201908201514_201908201901.nc4 INFO 2019-08-22 18:09:25,885Z lrauvNc4ToNetcdf.py processResampleNc4File():957 Creating t variable of the time indexes INFO 2019-08-22 18:09:26,075Z lrauvNc4ToNetcdf.py processResampleNc4File():1032 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen WARNING 2019-08-22 18:09:26,075Z lrauvNc4ToNetcdf.py processResampleNc4File():1034 'sea_water_salinity' not in /mbari/LRAUV/makai/missionlogs/2019/20190819_20190821/20190820T151440/201908201514_201908201901.nc4 WARNING 2019-08-22 18:09:26,075Z lrauvNc4ToNetcdf.py processResampleNc4File():1034 'sea_water_temperature' not in /mbari/LRAUV/makai/missionlogs/2019/20190819_20190821/20190820T151440/201908201514_201908201901.nc4 INFO 2019-08-22 18:09:26,256Z lrauvNc4ToNetcdf.py processResampleNc4File():1032 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity INFO 2019-08-22 18:09:26,437Z lrauvNc4ToNetcdf.py processResampleNc4File():1032 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature WARNING 2019-08-22 18:09:26,437Z lrauvNc4ToNetcdf.py processResampleNc4File():1034 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/makai/missionlogs/2019/20190819_20190821/20190820T151440/201908201514_201908201901.nc4 INFO 2019-08-22 18:09:27,089Z lrauvNc4ToNetcdf.py processResampleNc4File():1032 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR INFO 2019-08-22 18:09:27,447Z lrauvNc4ToNetcdf.py processResampleNc4File():1032 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2019-08-22 18:09:27,805Z lrauvNc4ToNetcdf.py processResampleNc4File():1032 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470 INFO 2019-08-22 18:09:28,172Z lrauvNc4ToNetcdf.py processResampleNc4File():1032 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650 WARNING 2019-08-22 18:09:28,172Z lrauvNc4ToNetcdf.py processResampleNc4File():1034 'concentration_of_chromophoric_dissolved_organic_matter_in_sea_water' not in /mbari/LRAUV/makai/missionlogs/2019/20190819_20190821/20190820T151440/201908201514_201908201901.nc4 WARNING 2019-08-22 18:09:28,172Z lrauvNc4ToNetcdf.py processResampleNc4File():1034 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/makai/missionlogs/2019/20190819_20190821/20190820T151440/201908201514_201908201901.nc4 WARNING 2019-08-22 18:09:28,172Z lrauvNc4ToNetcdf.py processResampleNc4File():1034 'BackscatteringCoeff700nm' not in /mbari/LRAUV/makai/missionlogs/2019/20190819_20190821/20190820T151440/201908201514_201908201901.nc4 WARNING 2019-08-22 18:09:28,172Z lrauvNc4ToNetcdf.py processResampleNc4File():1034 'VolumeScatCoeff117deg700nm' not in /mbari/LRAUV/makai/missionlogs/2019/20190819_20190821/20190820T151440/201908201514_201908201901.nc4 WARNING 2019-08-22 18:09:28,173Z lrauvNc4ToNetcdf.py processResampleNc4File():1034 'mass_concentration_of_petroleum_hydrocarbons_in_sea_water' not in /mbari/LRAUV/makai/missionlogs/2019/20190819_20190821/20190820T151440/201908201514_201908201901.nc4 INFO 2019-08-22 18:09:28,174Z lrauvNc4ToNetcdf.py nudge_coords():587 /mbari/LRAUV/makai/missionlogs/2019/20190819_20190821/20190820T151440/201908201514_201908201901.nc4 DEBUG 2019-08-22 18:09:28,597Z lrauvNc4ToNetcdf.py var_series():575 longitude: rad_to_deg = True DEBUG 2019-08-22 18:09:29,023Z lrauvNc4ToNetcdf.py var_series():575 latitude: rad_to_deg = True DEBUG 2019-08-22 18:09:29,061Z lrauvNc4ToNetcdf.py var_series():575 longitude_fix: rad_to_deg = True DEBUG 2019-08-22 18:09:29,100Z lrauvNc4ToNetcdf.py var_series():575 latitude_fix: rad_to_deg = True INFO 2019-08-22 18:09:29,101Z lrauvNc4ToNetcdf.py nudge_coords():605 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2019-08-22 18:09:29,103Z lrauvNc4ToNetcdf.py nudge_coords():621 - - - 3 0.01 - - INFO 2019-08-22 18:09:29,108Z lrauvNc4ToNetcdf.py nudge_coords():643 0: 0.324 -0.0001242 0.0000740 384 2.97 -2.61 4.62 INFO 2019-08-22 18:09:29,115Z lrauvNc4ToNetcdf.py nudge_coords():643 1: 0.364 0.0000070 0.0003337 4551 30.68 -1.15 2.02 INFO 2019-08-22 18:09:29,121Z lrauvNc4ToNetcdf.py nudge_coords():643 2: 0.382 -0.0001962 0.0000970 428 3.21 -3.19 5.60 INFO 2019-08-22 18:09:29,127Z lrauvNc4ToNetcdf.py nudge_coords():643 3: 0.372 0.0000505 0.0002908 2820 19.01 -1.62 2.83 INFO 2019-08-22 18:09:29,134Z lrauvNc4ToNetcdf.py nudge_coords():643 4: 0.299 -0.0001285 0.0003927 1077 7.43 -5.60 9.79 INFO 2019-08-22 18:09:29,140Z lrauvNc4ToNetcdf.py nudge_coords():643 5: 0.375 -0.0002725 0.0003290 804 5.41 -6.45 11.27 INFO 2019-08-22 18:09:29,146Z lrauvNc4ToNetcdf.py nudge_coords():643 6: 0.386 -0.0001622 0.0002473 801 5.39 -4.86 8.51 INFO 2019-08-22 18:09:29,152Z lrauvNc4ToNetcdf.py nudge_coords():643 7: 0.375 -0.0002025 0.0002263 802 5.39 -4.45 7.78 INFO 2019-08-22 18:09:29,158Z lrauvNc4ToNetcdf.py nudge_coords():643 8: 0.371 -0.0002478 0.0002503 801 5.39 -4.92 8.61 INFO 2019-08-22 18:09:29,165Z lrauvNc4ToNetcdf.py nudge_coords():643 9: 0.369 -0.0002975 0.0002907 803 5.40 -5.70 9.97 INFO 2019-08-22 18:09:29,171Z lrauvNc4ToNetcdf.py nudge_coords():643 10: 0.370 -0.0001760 0.0001818 472 3.17 -6.07 10.62 INFO 2019-08-22 18:09:29,177Z lrauvNc4ToNetcdf.py nudge_coords():643 11: 0.348 -0.0000520 0.0000465 125 0.84 -5.89 10.31 INFO 2019-08-22 18:09:29,183Z lrauvNc4ToNetcdf.py nudge_coords():643 12: 0.373 -0.0005036 -0.0001387 9174 62.12 0.24 -0.41 INFO 2019-08-22 18:09:29,190Z lrauvNc4ToNetcdf.py nudge_coords():643 13: 0.372 -0.0003280 0.0001677 902 6.19 -2.87 5.02 INFO 2019-08-22 18:09:29,196Z lrauvNc4ToNetcdf.py nudge_coords():643 14: 0.366 -0.0003137 0.0001562 802 5.39 -3.07 5.36 INFO 2019-08-22 18:09:29,203Z lrauvNc4ToNetcdf.py nudge_coords():643 15: 0.371 -0.0000900 0.0000793 341 2.29 -3.67 6.42 INFO 2019-08-22 18:09:29,209Z lrauvNc4ToNetcdf.py nudge_coords():643 16: 0.344 -0.0000278 0.0000118 122 0.82 -1.53 2.68 INFO 2019-08-22 18:09:29,215Z lrauvNc4ToNetcdf.py nudge_coords():643 17: 0.370 -0.0015938 0.0006440 1731 11.73 -5.82 10.18 INFO 2019-08-22 18:09:29,221Z lrauvNc4ToNetcdf.py nudge_coords():643 18: 0.367 0.0000332 0.0001122 499 3.46 -3.44 6.01 INFO 2019-08-22 18:09:29,227Z lrauvNc4ToNetcdf.py nudge_coords():643 19: 0.358 -0.0000100 0.0000153 38 0.25 -6.51 11.39 INFO 2019-08-22 18:09:29,233Z lrauvNc4ToNetcdf.py nudge_coords():643 20: 0.366 -0.0000062 0.0000005 6 0.03 -1.56 2.73 INFO 2019-08-22 18:09:29,239Z lrauvNc4ToNetcdf.py nudge_coords():643 21: 0.366 0.0000003 -0.0000008 8 0.05 1.88 -3.28 INFO 2019-08-22 18:09:29,245Z lrauvNc4ToNetcdf.py nudge_coords():643 22: 0.376 -0.0000050 -0.0000083 7 0.04 22.00 -38.47 INFO 2019-08-22 18:09:29,251Z lrauvNc4ToNetcdf.py nudge_coords():643 23: 0.374 -0.0000005 0.0000002 8 0.05 -0.37 0.65 INFO 2019-08-22 18:09:29,257Z lrauvNc4ToNetcdf.py nudge_coords():643 24: 0.365 -0.0000033 0.0000005 7 0.04 -1.31 2.30 INFO 2019-08-22 18:09:29,263Z lrauvNc4ToNetcdf.py nudge_coords():643 25: 0.371 -0.0000087 0.0000065 8 0.05 -14.54 25.42 INFO 2019-08-22 18:09:29,268Z lrauvNc4ToNetcdf.py nudge_coords():643 26: 0.362 -0.0000047 0.0000035 7 0.04 -9.11 15.92 INFO 2019-08-22 18:09:29,274Z lrauvNc4ToNetcdf.py nudge_coords():643 27: 0.355 -0.0000023 0.0000023 7 0.04 -6.06 10.60 INFO 2019-08-22 18:09:29,280Z lrauvNc4ToNetcdf.py nudge_coords():643 28: 0.359 -0.0000032 -0.0000015 8 0.05 3.34 -5.85 INFO 2019-08-22 18:09:29,287Z lrauvNc4ToNetcdf.py nudge_coords():643 29: 0.358 -0.0000028 0.0000020 7 0.04 -5.19 9.08 INFO 2019-08-22 18:09:29,293Z lrauvNc4ToNetcdf.py nudge_coords():643 30: 0.360 -0.0000840 0.0000322 220 1.47 -2.31 4.04 INFO 2019-08-22 18:09:29,299Z lrauvNc4ToNetcdf.py nudge_coords():643 31: 0.368 -0.0000407 0.0000093 81 0.54 -1.82 3.18 INFO 2019-08-22 18:09:29,305Z lrauvNc4ToNetcdf.py nudge_coords():643 32: 0.369 -0.0000558 0.0000225 137 0.92 -2.60 4.54 INFO 2019-08-22 18:09:29,311Z lrauvNc4ToNetcdf.py nudge_coords():643 33: 0.375 -0.0007212 0.0002066 3821 25.75 -0.86 1.49 INFO 2019-08-22 18:09:29,318Z lrauvNc4ToNetcdf.py nudge_coords():643 34: 0.334 -0.0003013 0.0002412 913 6.43 -4.00 6.95 INFO 2019-08-22 18:09:29,324Z lrauvNc4ToNetcdf.py nudge_coords():643 35: 0.363 -0.0000482 0.0000413 123 0.82 -5.35 9.30 INFO 2019-08-22 18:09:29,330Z lrauvNc4ToNetcdf.py nudge_coords():643 36: 0.377 -0.0003789 0.0002216 426 2.86 -8.26 14.35 INFO 2019-08-22 18:09:29,336Z lrauvNc4ToNetcdf.py nudge_coords():673 38: - - - 190 1.27 - - INFO 2019-08-22 18:09:29,337Z lrauvNc4ToNetcdf.py nudge_coords():677 Points in final series = 33461 DEBUG 2019-08-22 18:09:29,337Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():503 Constructing trackingdb url to 3600 seconds beyond time range of file INFO 2019-08-22 18:09:29,360Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():511 http://odss.mbari.org/trackingdb/position/makai_ac/between/20190820T141440/20190820T200158/data.csv INFO 2019-08-22 18:09:29,393Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():534 Found 0 position values from the Tracking database INFO 2019-08-22 18:09:29,399Z lrauvNc4ToNetcdf.py processResampleNc4File():1085 ['oxygen', 'salinity', 'temperature', 'PAR', 'chlorophyll', 'bbp470', 'bbp650', 'latitude', 'longitude', 'depth', 'time'] DEBUG 2019-08-22 18:09:29,435Z lrauvNc4ToNetcdf.py write_netcdf():117 Creating netCDF file /mbari/LRAUV/makai/missionlogs/2019/20190819_20190821/20190820T151440/201908201514_201908201901_10S_sci.nc DEBUG 2019-08-22 18:09:29,440Z lrauvNc4ToNetcdf.py write_netcdf():139 Adding in record variable time DEBUG 2019-08-22 18:09:29,454Z lrauvNc4ToNetcdf.py write_netcdf():151 Adding in record variable oxygen DEBUG 2019-08-22 18:09:29,458Z lrauvNc4ToNetcdf.py write_netcdf():151 Adding in record variable salinity DEBUG 2019-08-22 18:09:29,460Z lrauvNc4ToNetcdf.py write_netcdf():151 Adding in record variable temperature DEBUG 2019-08-22 18:09:29,462Z lrauvNc4ToNetcdf.py write_netcdf():151 Adding in record variable PAR DEBUG 2019-08-22 18:09:29,465Z lrauvNc4ToNetcdf.py write_netcdf():151 Adding in record variable chlorophyll DEBUG 2019-08-22 18:09:29,468Z lrauvNc4ToNetcdf.py write_netcdf():151 Adding in record variable bbp470 DEBUG 2019-08-22 18:09:29,471Z lrauvNc4ToNetcdf.py write_netcdf():151 Adding in record variable bbp650 DEBUG 2019-08-22 18:09:29,473Z lrauvNc4ToNetcdf.py write_netcdf():151 Adding in record variable latitude DEBUG 2019-08-22 18:09:29,480Z lrauvNc4ToNetcdf.py write_netcdf():151 Adding in record variable longitude DEBUG 2019-08-22 18:09:29,483Z lrauvNc4ToNetcdf.py write_netcdf():151 Adding in record variable depth DEBUG 2019-08-22 18:09:29,485Z lrauvNc4ToNetcdf.py write_netcdf():158 Adding in global metadata INFO 2019-08-22 18:09:29,523Z lrauvNc4ToNetcdf.py processResampleNc4File():1088 Wrote /mbari/LRAUV/makai/missionlogs/2019/20190819_20190821/20190820T151440/201908201514_201908201901_10S_sci.nc