INFO 2020-11-12 15:30:55,022Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/makai/missionlogs/2018/20180828_20180903/20180830T213803/201808302138_201808302147.nc4 file...
INFO 2020-11-12 15:30:55,023Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201808302138_201808302147.nc4
INFO 2020-11-12 15:30:56,224Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/makai/missionlogs/2018/20180828_20180903/20180830T213803/201808302138_201808302147.nc4
INFO 2020-11-12 15:30:56,253Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:56,329Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:56,404Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:56,483Z lrauvNc4ToNetcdf.py createSeries():241 time     :   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:56,561Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:56,634Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:56,707Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:56,785Z lrauvNc4ToNetcdf.py createSeries():241 time     :   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:56,862Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:56,935Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:57,009Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:57,086Z lrauvNc4ToNetcdf.py createSeries():241 time     :   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:57,164Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:57,236Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:57,308Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:57,385Z lrauvNc4ToNetcdf.py createSeries():241 time     :   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:57,443Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes
INFO 2020-11-12 15:30:57,451Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2020-11-12 15:30:57,454Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable sea_water_salinity empty so skipping
INFO 2020-11-12 15:30:57,456Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable sea_water_temperature empty so skipping
INFO 2020-11-12 15:30:57,458Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_salinity empty so skipping
INFO 2020-11-12 15:30:57,460Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_temperature empty so skipping
INFO 2020-11-12 15:30:57,462Z lrauvNc4ToNetcdf.py createSeries():241 downwelling_photosynthetic_photon_flux_in_sea_water:   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:57,483Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-11-12 15:30:57,488Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:30:57,493Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2020-11-12 15:30:57,498Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-11-12 15:30:57,503Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-11-12 15:30:57,505Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_mean_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2020-11-12 15:30:57,508Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2020-11-12 15:30:57,515Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable platform_battery_charge empty so skipping
INFO 2020-11-12 15:30:57,521Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable platform_battery_voltage empty so skipping
INFO 2020-11-12 15:30:57,526Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-11-12 15:30:57,531Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-11-12 15:30:57,536Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-11-12 15:30:57,542Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-11-12 15:30:57,547Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-11-12 15:30:57,554Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-11-12 15:30:57,559Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-11-12 15:30:57,565Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-11-12 15:30:57,567Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2020-11-12 15:30:57,568Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:57,584Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:30:57,586Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:57,602Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:30:57,603Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   87 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:57,619Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:30:57,644Z lrauvNc4ToNetcdf.py createSeries():241 platform_pitch_angle:   85 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:57,706Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:30:57,729Z lrauvNc4ToNetcdf.py createSeries():241 platform_roll_angle:   85 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:57,791Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:30:57,814Z lrauvNc4ToNetcdf.py createSeries():241 platform_orientation:   85 v_t values found before 2018-08-30 21:38:00 and after 2018-08-30 21:47:00
INFO 2020-11-12 15:30:57,875Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:30:57,875Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/makai/missionlogs/2018/20180828_20180903/20180830T213803/201808302138_201808302147.nc4
INFO 2020-11-12 15:30:58,105Z lrauvNc4ToNetcdf.py nudge_coords():674 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-11-12 15:30:58,106Z lrauvNc4ToNetcdf.py nudge_coords():691                  -            -            -         0      0.00              -              -                             -
INFO 2020-11-12 15:30:58,107Z lrauvNc4ToNetcdf.py nudge_coords():724    0:        0.352   -0.0000203    0.0000385        95      0.72          -5.28           9.86 2018-08-30 21:41:49.324214935
INFO 2020-11-12 15:30:58,112Z lrauvNc4ToNetcdf.py nudge_coords():754    2:            -            -            -       775      5.86              -              -
INFO 2020-11-12 15:30:58,112Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 870
INFO 2020-11-12 15:30:58,134Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/makai_ac/between/20180830T203814/20180830T224740/data.csv
INFO 2020-11-12 15:30:58,170Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database
INFO 2020-11-12 15:30:58,172Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['oxygen', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-11-12 15:30:58,482Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/makai/missionlogs/2018/20180828_20180903/20180830T213803/201808302138_201808302147_2S_scieng.nc