INFO 2020-11-12 15:26:37,172Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180827T122456/201808271225_201808271631.nc4 file...
INFO 2020-11-12 15:26:37,172Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201808271225_201808271631.nc4
INFO 2020-11-12 15:26:38,309Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180827T122456/201808271225_201808271631.nc4
INFO 2020-11-12 15:26:38,340Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  110 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:38,830Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  110 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:39,315Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  111 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:39,795Z lrauvNc4ToNetcdf.py createSeries():241 time     :  110 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:40,274Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  110 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:40,750Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  110 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:41,228Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  111 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:41,704Z lrauvNc4ToNetcdf.py createSeries():241 time     :  110 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:42,183Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  110 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:42,661Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  110 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:43,148Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  111 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:43,626Z lrauvNc4ToNetcdf.py createSeries():241 time     :  110 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:44,106Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  110 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:44,585Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  110 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:45,073Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  111 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:45,557Z lrauvNc4ToNetcdf.py createSeries():241 time     :  110 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:46,014Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes
INFO 2020-11-12 15:26:46,248Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2020-11-12 15:26:46,478Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2020-11-12 15:26:46,707Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2020-11-12 15:26:46,758Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to salinity
INFO 2020-11-12 15:26:46,809Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to temperature
INFO 2020-11-12 15:26:46,813Z lrauvNc4ToNetcdf.py createSeries():241 downwelling_photosynthetic_photon_flux_in_sea_water:  110 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:47,257Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-11-12 15:26:47,703Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:26:48,154Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2020-11-12 15:26:48,598Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-11-12 15:26:49,044Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-11-12 15:26:49,095Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:26:49,146Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:26:49,162Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2020-11-12 15:26:49,176Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2020-11-12 15:26:49,178Z lrauvNc4ToNetcdf.py createSeries():241 time_fix :    1 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:49,183Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-11-12 15:26:49,185Z lrauvNc4ToNetcdf.py createSeries():241 latitude_fix:    1 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:49,190Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-11-12 15:26:49,192Z lrauvNc4ToNetcdf.py createSeries():241 longitude_fix:    1 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:49,197Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-11-12 15:26:49,219Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-11-12 15:26:49,300Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-11-12 15:26:49,309Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-11-12 15:26:49,382Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-11-12 15:26:49,906Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-11-12 15:26:49,912Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:26:49,916Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  110 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:50,359Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:26:50,363Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  110 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:50,802Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:26:50,806Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  110 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:51,246Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:26:51,278Z lrauvNc4ToNetcdf.py createSeries():241 platform_pitch_angle:   87 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:51,745Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:26:51,775Z lrauvNc4ToNetcdf.py createSeries():241 platform_roll_angle:   87 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:52,243Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:26:52,272Z lrauvNc4ToNetcdf.py createSeries():241 platform_orientation:   87 v_t values found before 2018-08-27 12:25:00 and after 2018-08-27 16:31:00
INFO 2020-11-12 15:26:52,738Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:26:52,739Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180827T122456/201808271225_201808271631.nc4
INFO 2020-11-12 15:26:53,793Z lrauvNc4ToNetcdf.py nudge_coords():674 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-11-12 15:26:53,794Z lrauvNc4ToNetcdf.py nudge_coords():691                  -            -            -         0      0.00              -              -                             -
INFO 2020-11-12 15:26:53,796Z lrauvNc4ToNetcdf.py nudge_coords():724    0:        0.270    0.0000833    0.0000120       356      2.73          -0.44           0.81 2018-08-27 12:29:10.595092058
INFO 2020-11-12 15:26:53,801Z lrauvNc4ToNetcdf.py nudge_coords():724    1:        0.331   -0.0119073    0.0037232     21552    144.86          -2.58           4.76 2018-08-27 14:54:02.528179884
INFO 2020-11-12 15:26:53,807Z lrauvNc4ToNetcdf.py nudge_coords():724    2:        0.206    0.0002255    0.0000618       752      5.93          -1.05           1.93 2018-08-27 14:59:58.486685991
INFO 2020-11-12 15:26:53,811Z lrauvNc4ToNetcdf.py nudge_coords():724    3:        0.346    0.0000785    0.0000565       280      2.49          -2.27           4.20 2018-08-27 15:02:28.376163006
INFO 2020-11-12 15:26:53,816Z lrauvNc4ToNetcdf.py nudge_coords():724    4:        0.276   -0.0013176    0.0006458      2699     18.21          -3.53           6.57 2018-08-27 15:20:41.325783014
INFO 2020-11-12 15:26:53,821Z lrauvNc4ToNetcdf.py nudge_coords():724    5:        0.328    0.0000380    0.0000327        30      0.50          -6.50          12.09 2018-08-27 15:21:11.716461897
INFO 2020-11-12 15:26:53,825Z lrauvNc4ToNetcdf.py nudge_coords():724    6:        0.355   -0.0009088    0.0007105      2544     16.99          -4.13           7.75 2018-08-27 15:38:11.796557903
INFO 2020-11-12 15:26:53,830Z lrauvNc4ToNetcdf.py nudge_coords():724    7:        0.386   -0.0000293    0.0000122       265      2.31          -0.52           0.98 2018-08-27 15:40:30.817495108
INFO 2020-11-12 15:26:53,835Z lrauvNc4ToNetcdf.py nudge_coords():724    8:        0.346   -0.0007877    0.0008202      2528     17.12          -4.69           8.88 2018-08-27 15:57:38.454478979
INFO 2020-11-12 15:26:53,839Z lrauvNc4ToNetcdf.py nudge_coords():724    9:        0.285    0.0019355    0.0008375       866      6.54         -12.52          23.72 2018-08-27 16:04:11.383306980
INFO 2020-11-12 15:26:53,844Z lrauvNc4ToNetcdf.py nudge_coords():724   10:        0.346   -0.0007293   -0.0001148       926      6.90           1.63          -3.08 2018-08-27 16:11:05.628851891
INFO 2020-11-12 15:26:53,848Z lrauvNc4ToNetcdf.py nudge_coords():724   11:        0.324    0.0005037    0.0004842       846      6.16          -7.69          14.57 2018-08-27 16:17:15.617928982
INFO 2020-11-12 15:26:53,853Z lrauvNc4ToNetcdf.py nudge_coords():724   12:        0.270    0.0017747    0.0007592      1007      7.29         -10.17          19.30 2018-08-27 16:24:33.258291006
INFO 2020-11-12 15:26:53,858Z lrauvNc4ToNetcdf.py nudge_coords():724   13:        0.351   -0.0033685    0.0002502       981      7.07          -3.45           6.56 2018-08-27 16:31:37.657218933
INFO 2020-11-12 15:26:53,862Z lrauvNc4ToNetcdf.py nudge_coords():754   15:            -            -            -        15      0.22              -              -
INFO 2020-11-12 15:26:53,862Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 35647
INFO 2020-11-12 15:26:53,888Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/makai_ac/between/20180827T112507/20180827T173151/data.csv
INFO 2020-11-12 15:26:53,932Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database
INFO 2020-11-12 15:26:53,936Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['oxygen', 'salinity', 'temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-11-12 15:26:54,414Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180827T122456/201808271225_201808271631_2S_scieng.nc